Wall clock time and date at job start Tue Mar 31 2020 00:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32998 * 119.99980 * 2 1 4 4 C 1.47106 * 119.99600 * 5.97160 * 3 2 1 5 5 O 1.21608 * 120.00257 * 354.97940 * 4 3 2 6 6 N 1.34777 * 119.99482 * 174.98017 * 4 3 2 7 7 C 1.46491 * 120.00206 * 359.97438 * 6 4 3 8 8 C 1.46504 * 119.99646 * 180.02562 * 6 4 3 9 9 C 1.53777 * 113.61050 * 239.99885 * 8 6 4 10 10 C 1.53782 * 87.08156 * 219.93578 * 9 8 6 11 11 N 1.46503 * 113.60929 * 270.80066 * 10 9 8 12 12 C 1.36944 * 119.99882 * 203.46445 * 11 10 9 13 13 H 1.08002 * 119.99473 * 0.02562 * 12 11 10 14 14 C 1.38806 * 120.00311 * 180.02562 * 12 11 10 15 15 N 1.31620 * 119.99727 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00202 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47006 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47303 * 119.99893 * 16 14 12 19 19 H 1.48495 * 109.47153 * 239.99830 * 16 14 12 20 20 C 1.53781 * 87.17320 * 25.38807 * 10 9 8 21 21 C 1.50698 * 120.00118 * 179.97438 * 2 1 3 22 22 C 1.52999 * 117.49801 * 14.83238 * 21 2 1 23 23 C 1.53006 * 117.50153 * 306.17018 * 21 2 1 24 24 H 1.09004 * 109.47205 * 55.78160 * 1 2 3 25 25 H 1.09004 * 109.46740 * 175.77895 * 1 2 3 26 26 H 1.09000 * 109.47297 * 295.77692 * 1 2 3 27 27 H 1.07995 * 120.00227 * 185.97296 * 3 2 1 28 28 H 1.09004 * 109.47281 * 269.99798 * 7 6 4 29 29 H 1.09003 * 109.47492 * 30.00248 * 7 6 4 30 30 H 1.09007 * 109.47194 * 150.00175 * 7 6 4 31 31 H 1.09004 * 112.85018 * 11.19112 * 8 6 4 32 32 H 1.09004 * 113.61691 * 105.38467 * 9 8 6 33 33 H 1.09004 * 113.61887 * 334.48248 * 9 8 6 34 34 H 1.08995 * 113.61978 * 139.98200 * 10 9 8 35 35 H 0.96994 * 120.00348 * 23.47238 * 11 10 9 36 36 H 0.97004 * 120.00080 * 179.97438 * 15 14 12 37 37 H 1.09002 * 113.60928 * 89.15970 * 20 10 9 38 38 H 1.08997 * 113.61575 * 220.06619 * 20 10 9 39 39 H 1.09004 * 115.54752 * 160.50071 * 21 2 1 40 40 H 1.08996 * 117.50363 * 359.97438 * 22 21 2 41 41 H 1.09004 * 117.49732 * 145.02465 * 22 21 2 42 42 H 1.08994 * 117.50031 * 214.98294 * 23 21 2 43 43 H 1.09001 * 117.49300 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4423 2.4223 0.1325 5 8 0.2264 2.4262 0.1502 6 7 2.1216 3.5819 0.2344 7 6 3.5863 3.5771 0.2136 8 6 1.3950 4.8471 0.3669 9 6 1.6834 5.8448 -0.7672 10 6 1.6832 6.9453 0.3070 11 7 0.3613 7.5282 0.5495 12 6 0.2546 8.7859 1.0807 13 1 1.1450 9.3481 1.3204 14 6 -0.9979 9.3382 1.3110 15 7 -2.0830 8.6528 1.0193 16 14 -1.1434 11.0540 2.0349 17 1 0.2138 11.6083 2.2712 18 1 -1.8774 11.9305 1.0872 19 1 -1.8824 10.9876 3.3212 20 6 2.0694 5.8526 1.3179 21 6 2.2605 -1.3051 0.0006 22 6 1.4776 -2.5730 -0.3463 23 6 1.9201 -2.3170 1.0966 24 1 -0.3634 0.5779 -0.8498 25 1 -0.3633 -1.0249 -0.0756 26 1 -0.3634 0.4469 0.9254 27 1 3.2475 1.1544 -0.0973 28 1 3.9639 3.4778 1.2313 29 1 3.9385 2.7391 -0.3879 30 1 3.9467 4.5109 -0.2181 31 1 0.3323 4.7063 0.5648 32 1 0.8691 5.9361 -1.4861 33 1 2.6537 5.6980 -1.2417 34 1 2.4576 7.6983 0.1609 35 1 -0.4384 7.0234 0.3339 36 1 -2.9584 9.0385 1.1805 37 1 3.1455 5.7080 1.4145 38 1 1.5663 5.9502 2.2798 39 1 3.2984 -1.2488 -0.3277 40 1 0.4174 -2.4633 -0.5745 41 1 2.0006 -3.3511 -0.9023 42 1 2.7339 -2.9266 1.4891 43 1 1.1514 -2.0384 1.8175 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508096602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:10 Heat of formation + Delta-G solvation = 46.478393 kcal Electronic energy + Delta-G solvation = -21423.545044 eV Core-core repulsion = 18278.349341 eV Total energy + Delta-G solvation = -3145.195704 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.14016 -38.63955 -37.65259 -34.75655 -33.30837 -32.84754 -29.81257 -27.86821 -26.96992 -25.14612 -24.93167 -23.77250 -22.72250 -22.35939 -19.86140 -18.20501 -18.19648 -17.51711 -17.02054 -16.19975 -15.67692 -15.23819 -14.84841 -14.71110 -13.92978 -13.63865 -13.56209 -13.15258 -12.98530 -12.67190 -12.61265 -12.44368 -11.99366 -11.93503 -11.82978 -11.74217 -11.47966 -11.31512 -11.12005 -10.86868 -10.77397 -10.71756 -10.20331 -10.11055 -9.71744 -9.63675 -9.28962 -9.05657 -8.88863 -8.24092 -6.98368 -5.77118 -3.07250 1.28704 3.24463 3.33703 3.43762 3.48913 3.51658 3.65571 4.25443 4.52344 4.57759 4.61105 4.71020 4.87998 4.94859 5.17841 5.22150 5.24014 5.26590 5.44157 5.45944 5.47783 5.57642 5.58859 5.71013 5.74292 5.77915 5.83822 5.89869 5.96998 6.08164 6.13337 6.29322 6.37920 6.43981 6.48831 6.68264 6.75522 6.86063 7.09739 7.68363 7.71957 8.40963 8.43962 9.51725 10.08818 10.42959 11.45092 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035185 B = 0.003091 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.593248 B = 9055.304881 C = 9539.319885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.007 4.007 3 C -0.226 4.226 4 C 0.541 3.459 5 O -0.540 6.540 6 N -0.601 5.601 7 C 0.079 3.921 8 C 0.126 3.874 9 C -0.167 4.167 10 C 0.172 3.828 11 N -0.706 5.706 12 C -0.244 4.244 13 H 0.073 0.927 14 C -0.012 4.012 15 N -0.930 5.930 16 Si 0.909 3.091 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C -0.182 4.182 21 C -0.131 4.131 22 C -0.175 4.175 23 C -0.165 4.165 24 H 0.085 0.915 25 H 0.053 0.947 26 H 0.083 0.917 27 H 0.126 0.874 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.386 0.614 36 H 0.256 0.744 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.114 0.886 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.886 -20.744 -2.755 24.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.009 4.009 3 C -0.247 4.247 4 C 0.332 3.668 5 O -0.419 6.419 6 N -0.332 5.332 7 C -0.065 4.065 8 C 0.024 3.976 9 C -0.208 4.208 10 C 0.059 3.941 11 N -0.345 5.345 12 C -0.375 4.375 13 H 0.091 0.909 14 C -0.209 4.209 15 N -0.577 5.577 16 Si 0.740 3.260 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 C -0.224 4.224 21 C -0.150 4.150 22 C -0.212 4.212 23 C -0.202 4.202 24 H 0.104 0.896 25 H 0.072 0.928 26 H 0.102 0.898 27 H 0.143 0.857 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.135 0.865 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.221 0.779 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.132 0.868 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.245 -20.513 -2.675 24.038 hybrid contribution -0.086 0.755 0.360 0.841 sum 12.159 -19.757 -2.314 23.314 Atomic orbital electron populations 1.21097 0.90657 1.01049 1.04720 1.21786 0.96231 0.92272 0.90571 1.22432 1.00143 0.92059 1.10075 1.18527 0.87279 0.84113 0.76901 1.90784 1.13645 1.86998 1.50493 1.47817 1.06555 1.06768 1.72105 1.21736 0.80339 1.02885 1.01494 1.22736 0.97811 0.79696 0.97390 1.23932 1.01427 0.97392 0.98017 1.20908 0.89883 0.91418 0.91885 1.42227 1.01080 1.16631 1.74552 1.19311 0.92387 0.91751 1.34025 0.90904 1.24790 0.95408 0.98679 1.01997 1.69686 0.97013 1.37373 1.53650 0.86095 0.77426 0.84093 0.78422 1.20502 1.21829 1.21830 1.24321 0.99260 0.98444 1.00360 1.21263 0.99515 0.88498 1.05683 1.23130 1.01304 0.98292 0.98461 1.22990 1.03838 1.01277 0.92062 0.89635 0.92844 0.89816 0.85652 0.92818 0.91352 0.90756 0.86495 0.91158 0.90530 0.91573 0.77927 0.93429 0.91077 0.91009 0.86848 0.87811 0.88353 0.88232 0.88299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 8.10 36.00 0.29 -1.15 16 2 C -0.01 -0.07 5.82 -101.17 -0.59 -0.66 16 3 C -0.23 -2.70 8.88 -37.80 -0.34 -3.04 16 4 C 0.54 8.54 7.59 -12.66 -0.10 8.44 16 5 O -0.54 -10.37 12.59 5.27 0.07 -10.31 16 6 N -0.60 -8.93 3.08 -174.29 -0.54 -9.47 16 7 C 0.08 0.83 8.80 59.84 0.53 1.35 16 8 C 0.13 2.23 4.09 -67.03 -0.27 1.96 16 9 C -0.17 -2.90 7.36 -25.92 -0.19 -3.09 16 10 C 0.17 3.45 4.55 -67.12 -0.31 3.15 16 11 N -0.71 -18.05 5.31 -52.64 -0.28 -18.33 16 12 C -0.24 -6.82 9.97 -15.06 -0.15 -6.97 16 13 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 14 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 15 N -0.93 -28.56 13.06 55.49 0.72 -27.83 16 16 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 20 C -0.18 -3.21 7.32 -25.83 -0.19 -3.40 16 21 C -0.13 -1.08 6.00 -91.77 -0.55 -1.63 16 22 C -0.18 -1.21 9.83 -26.69 -0.26 -1.48 16 23 C -0.16 -1.17 10.13 -26.69 -0.27 -1.44 16 24 H 0.09 1.19 7.19 -51.93 -0.37 0.81 16 25 H 0.05 0.51 5.57 -51.93 -0.29 0.22 16 26 H 0.08 1.17 7.27 -51.93 -0.38 0.79 16 27 H 0.13 1.16 6.17 -52.49 -0.32 0.83 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.56 6.04 -51.93 -0.31 0.25 16 30 H 0.07 0.74 6.35 -51.93 -0.33 0.41 16 31 H 0.12 2.48 7.23 -51.93 -0.38 2.11 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.08 1.11 6.92 -51.93 -0.36 0.76 16 34 H 0.07 1.29 8.11 -51.93 -0.42 0.87 16 35 H 0.39 10.63 7.90 -40.82 -0.32 10.31 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.07 1.05 6.75 -51.93 -0.35 0.70 16 38 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 39 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 0.74 6.10 -51.93 -0.32 0.42 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 343.61 15.07 5.18 5.18 Total: -1.00 -32.40 343.61 -9.02 -41.43 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -6.66 Total: 10.24 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -2.49 Total: -8.41 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.09 Total: -55.63 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.07 Total: -10.31 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.40 -9.02 -41.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508096602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.904 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds