Wall clock time and date at job start Tue Mar 31 2020 00:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32998 * 119.99980 * 2 1 4 4 C 1.47106 * 119.99600 * 5.97160 * 3 2 1 5 5 O 1.21608 * 120.00257 * 354.97940 * 4 3 2 6 6 N 1.34777 * 119.99482 * 174.98017 * 4 3 2 7 7 C 1.46491 * 120.00206 * 359.97438 * 6 4 3 8 8 C 1.46504 * 119.99646 * 180.02562 * 6 4 3 9 9 C 1.53777 * 113.61050 * 239.99885 * 8 6 4 10 10 C 1.53782 * 87.08156 * 219.93578 * 9 8 6 11 11 N 1.46503 * 113.60929 * 270.80066 * 10 9 8 12 12 C 1.36944 * 119.99882 * 203.46445 * 11 10 9 13 13 H 1.08002 * 119.99473 * 0.02562 * 12 11 10 14 14 C 1.38806 * 120.00311 * 180.02562 * 12 11 10 15 15 N 1.31620 * 119.99727 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00202 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47006 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47303 * 119.99893 * 16 14 12 19 19 H 1.48495 * 109.47153 * 239.99830 * 16 14 12 20 20 C 1.53781 * 87.17320 * 25.38807 * 10 9 8 21 21 C 1.50698 * 120.00118 * 179.97438 * 2 1 3 22 22 C 1.52999 * 117.49801 * 14.83238 * 21 2 1 23 23 C 1.53006 * 117.50153 * 306.17018 * 21 2 1 24 24 H 1.09004 * 109.47205 * 55.78160 * 1 2 3 25 25 H 1.09004 * 109.46740 * 175.77895 * 1 2 3 26 26 H 1.09000 * 109.47297 * 295.77692 * 1 2 3 27 27 H 1.07995 * 120.00227 * 185.97296 * 3 2 1 28 28 H 1.09004 * 109.47281 * 269.99798 * 7 6 4 29 29 H 1.09003 * 109.47492 * 30.00248 * 7 6 4 30 30 H 1.09007 * 109.47194 * 150.00175 * 7 6 4 31 31 H 1.09004 * 112.85018 * 11.19112 * 8 6 4 32 32 H 1.09004 * 113.61691 * 105.38467 * 9 8 6 33 33 H 1.09004 * 113.61887 * 334.48248 * 9 8 6 34 34 H 1.08995 * 113.61978 * 139.98200 * 10 9 8 35 35 H 0.96994 * 120.00348 * 23.47238 * 11 10 9 36 36 H 0.97004 * 120.00080 * 179.97438 * 15 14 12 37 37 H 1.09002 * 113.60928 * 89.15970 * 20 10 9 38 38 H 1.08997 * 113.61575 * 220.06619 * 20 10 9 39 39 H 1.09004 * 115.54752 * 160.50071 * 21 2 1 40 40 H 1.08996 * 117.50363 * 359.97438 * 22 21 2 41 41 H 1.09004 * 117.49732 * 145.02465 * 22 21 2 42 42 H 1.08994 * 117.50031 * 214.98294 * 23 21 2 43 43 H 1.09001 * 117.49300 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4423 2.4223 0.1325 5 8 0.2264 2.4262 0.1502 6 7 2.1216 3.5819 0.2344 7 6 3.5863 3.5771 0.2136 8 6 1.3950 4.8471 0.3669 9 6 1.6834 5.8448 -0.7672 10 6 1.6832 6.9453 0.3070 11 7 0.3613 7.5282 0.5495 12 6 0.2546 8.7859 1.0807 13 1 1.1450 9.3481 1.3204 14 6 -0.9979 9.3382 1.3110 15 7 -2.0830 8.6528 1.0193 16 14 -1.1434 11.0540 2.0349 17 1 0.2138 11.6083 2.2712 18 1 -1.8774 11.9305 1.0872 19 1 -1.8824 10.9876 3.3212 20 6 2.0694 5.8526 1.3179 21 6 2.2605 -1.3051 0.0006 22 6 1.4776 -2.5730 -0.3463 23 6 1.9201 -2.3170 1.0966 24 1 -0.3634 0.5779 -0.8498 25 1 -0.3633 -1.0249 -0.0756 26 1 -0.3634 0.4469 0.9254 27 1 3.2475 1.1544 -0.0973 28 1 3.9639 3.4778 1.2313 29 1 3.9385 2.7391 -0.3879 30 1 3.9467 4.5109 -0.2181 31 1 0.3323 4.7063 0.5648 32 1 0.8691 5.9361 -1.4861 33 1 2.6537 5.6980 -1.2417 34 1 2.4576 7.6983 0.1609 35 1 -0.4384 7.0234 0.3339 36 1 -2.9584 9.0385 1.1805 37 1 3.1455 5.7080 1.4145 38 1 1.5663 5.9502 2.2798 39 1 3.2984 -1.2488 -0.3277 40 1 0.4174 -2.4633 -0.5745 41 1 2.0006 -3.3511 -0.9023 42 1 2.7339 -2.9266 1.4891 43 1 1.1514 -2.0384 1.8175 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508096602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:08 Heat of formation + Delta-G solvation = 26.494953 kcal Electronic energy + Delta-G solvation = -21424.411591 eV Core-core repulsion = 18278.349341 eV Total energy + Delta-G solvation = -3146.062251 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.38419 -39.79624 -38.63783 -36.21701 -34.81490 -34.07394 -31.79909 -28.90887 -27.97127 -26.63970 -26.32991 -25.37917 -23.70963 -23.21929 -20.98373 -19.69808 -19.34716 -19.10446 -18.31703 -17.19385 -16.82113 -16.56050 -16.39172 -15.83514 -15.49888 -15.15483 -14.71152 -14.44982 -14.26311 -13.93537 -13.72014 -13.37165 -13.35161 -13.29665 -13.21039 -12.81706 -12.68346 -12.49030 -12.45943 -12.12624 -12.07217 -11.85352 -11.81487 -11.66343 -11.33139 -11.20098 -10.93449 -10.50117 -9.97353 -9.40957 -9.05875 -7.96777 -5.27481 0.33523 1.46345 1.47959 1.58175 2.10988 2.26344 2.54206 3.02886 3.35082 3.47279 3.64625 3.85090 3.85290 3.86577 3.95828 4.04252 4.13058 4.17926 4.25576 4.33561 4.40207 4.61471 4.73060 4.74886 4.76576 4.79230 4.84147 4.92732 4.99672 5.03996 5.06181 5.14104 5.16794 5.22362 5.26729 5.33609 5.50947 5.51749 5.53702 5.76691 6.25137 6.54819 7.26067 7.29253 8.04819 8.27060 9.27134 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035185 B = 0.003091 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.593248 B = 9055.304881 C = 9539.319885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.001 4.001 3 C -0.233 4.233 4 C 0.526 3.474 5 O -0.591 6.591 6 N -0.600 5.600 7 C 0.068 3.932 8 C 0.129 3.871 9 C -0.147 4.147 10 C 0.154 3.846 11 N -0.725 5.725 12 C -0.241 4.241 13 H 0.085 0.915 14 C -0.082 4.082 15 N -0.974 5.974 16 Si 0.978 3.022 17 H -0.260 1.260 18 H -0.294 1.294 19 H -0.296 1.296 20 C -0.160 4.160 21 C -0.140 4.140 22 C -0.171 4.171 23 C -0.161 4.161 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.162 0.838 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.370 0.630 36 H 0.251 0.749 37 H 0.113 0.887 38 H 0.042 0.958 39 H 0.136 0.864 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.721 -22.026 -2.933 27.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.003 4.003 3 C -0.253 4.253 4 C 0.319 3.681 5 O -0.474 6.474 6 N -0.331 5.331 7 C -0.073 4.073 8 C 0.025 3.975 9 C -0.187 4.187 10 C 0.043 3.957 11 N -0.363 5.363 12 C -0.373 4.373 13 H 0.103 0.897 14 C -0.273 4.273 15 N -0.624 5.624 16 Si 0.807 3.193 17 H -0.184 1.184 18 H -0.221 1.221 19 H -0.223 1.223 20 C -0.202 4.202 21 C -0.158 4.158 22 C -0.207 4.207 23 C -0.198 4.198 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.076 0.924 27 H 0.179 0.821 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.136 0.864 34 H 0.097 0.903 35 H 0.201 0.799 36 H 0.059 0.941 37 H 0.131 0.869 38 H 0.061 0.939 39 H 0.153 0.847 40 H 0.115 0.885 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 16.186 -21.807 -2.854 27.306 hybrid contribution -1.245 1.046 0.399 1.674 sum 14.941 -20.761 -2.455 25.696 Atomic orbital electron populations 1.20995 0.92283 1.01722 1.02354 1.22034 0.95467 0.93885 0.88871 1.22467 1.01497 0.89984 1.11395 1.19322 0.87027 0.85616 0.76103 1.90770 1.16055 1.87780 1.52826 1.47869 1.08450 1.05254 1.71495 1.22106 0.77024 1.04906 1.03238 1.22268 0.95883 0.81627 0.97747 1.23807 1.02666 0.95467 0.96780 1.21227 0.87728 0.92645 0.94061 1.42446 1.02706 1.16235 1.74872 1.19766 0.92677 0.92494 1.32319 0.89747 1.25689 0.95238 1.02852 1.03550 1.69868 0.97313 1.39311 1.55946 0.84995 0.77993 0.79311 0.76979 1.18404 1.22093 1.22307 1.24130 1.01330 0.96724 0.98005 1.21331 1.00291 0.87056 1.07074 1.23229 1.01058 0.97871 0.98572 1.23081 1.04154 1.00673 0.91906 0.92087 0.90477 0.92420 0.82061 0.91371 0.88448 0.89506 0.91399 0.93454 0.86447 0.90254 0.79872 0.94072 0.86854 0.93942 0.84658 0.88473 0.86336 0.86201 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.96 8.10 71.24 0.58 -2.38 16 2 C 0.00 -0.01 5.82 -17.62 -0.10 -0.12 16 3 C -0.23 -5.16 8.88 23.43 0.21 -4.95 16 4 C 0.53 16.74 7.59 86.57 0.66 17.39 16 5 O -0.59 -24.36 12.59 -4.05 -0.05 -24.41 16 6 N -0.60 -17.16 3.08 -823.58 -2.54 -19.70 16 7 C 0.07 1.16 8.80 127.77 1.12 2.29 16 8 C 0.13 4.63 4.09 45.57 0.19 4.82 16 9 C -0.15 -5.00 7.36 31.12 0.23 -4.77 16 10 C 0.15 6.10 4.55 45.52 0.21 6.30 16 11 N -0.73 -38.16 5.31 -320.44 -1.70 -39.87 16 12 C -0.24 -13.64 9.97 84.03 0.84 -12.80 16 13 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 14 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 15 N -0.97 -62.27 13.06 21.65 0.28 -61.99 16 16 Si 0.98 47.08 29.55 68.60 2.03 49.11 16 17 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 18 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 19 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 20 C -0.16 -5.53 7.32 31.18 0.23 -5.30 16 21 C -0.14 -1.87 6.00 -11.54 -0.07 -1.94 16 22 C -0.17 -1.89 9.83 30.62 0.30 -1.59 16 23 C -0.16 -1.84 10.13 30.62 0.31 -1.53 16 24 H 0.06 1.83 7.19 -2.39 -0.02 1.81 16 25 H 0.08 1.49 5.57 -2.38 -0.01 1.47 16 26 H 0.06 1.75 7.27 -2.39 -0.02 1.73 16 27 H 0.16 2.30 6.17 -2.91 -0.02 2.28 16 28 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.10 1.12 6.04 -2.39 -0.01 1.11 16 30 H 0.09 1.28 6.35 -2.38 -0.02 1.27 16 31 H 0.07 3.13 7.23 -2.39 -0.02 3.11 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.12 3.02 6.92 -2.39 -0.02 3.00 16 34 H 0.08 2.93 8.11 -2.39 -0.02 2.91 16 35 H 0.37 21.58 7.90 -92.71 -0.73 20.84 16 36 H 0.25 15.49 8.31 -92.71 -0.77 14.71 16 37 H 0.11 2.94 6.75 -2.39 -0.02 2.93 16 38 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.10 1.20 6.10 -2.39 -0.01 1.18 16 41 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -75.57 343.61 3.46 -72.11 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: 0.28 Total: 33.66 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 5.16 Total: -8.92 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -3.96 Total: -121.56 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.05 Total: -24.41 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -75.57 3.46 -72.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508096602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.605 kcal (2) G-P(sol) polarization free energy of solvation -75.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds