Wall clock time and date at job start Tue Mar 31 2020 00:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32996 * 120.00318 * 2 1 4 4 C 1.47094 * 119.99931 * 172.70692 * 3 2 1 5 5 O 1.21615 * 120.00244 * 354.03158 * 4 3 2 6 6 N 1.34778 * 119.99993 * 174.03706 * 4 3 2 7 7 C 1.46496 * 119.99901 * 359.97438 * 6 4 3 8 8 C 1.46506 * 120.00097 * 180.02562 * 6 4 3 9 9 H 1.08996 * 110.88614 * 356.10902 * 8 6 4 10 10 C 1.55147 * 111.00744 * 119.99960 * 8 6 4 11 11 C 1.54323 * 102.94405 * 153.57210 * 10 8 6 12 12 N 1.47014 * 107.27026 * 337.80652 * 11 10 8 13 13 C 1.36941 * 125.64660 * 178.98913 * 12 11 10 14 14 H 1.08002 * 120.00048 * 174.77875 * 13 12 11 15 15 C 1.38815 * 120.00117 * 354.76953 * 13 12 11 16 16 N 1.31620 * 119.99635 * 7.20360 * 15 13 12 17 17 Si 1.86798 * 120.00053 * 187.19941 * 15 13 12 18 18 H 1.48493 * 109.47185 * 94.98298 * 17 15 13 19 19 H 1.48497 * 109.46887 * 214.98528 * 17 15 13 20 20 H 1.48503 * 109.47085 * 334.98352 * 17 15 13 21 21 C 1.47425 * 108.70655 * 358.93909 * 12 11 10 22 22 C 1.50698 * 119.99793 * 179.97438 * 2 1 3 23 23 C 1.53009 * 117.49968 * 1.30589 * 22 2 1 24 24 C 1.52999 * 117.50014 * 292.64497 * 22 2 1 25 25 H 1.09000 * 109.47314 * 89.99930 * 1 2 3 26 26 H 1.09009 * 109.46929 * 330.00343 * 1 2 3 27 27 H 1.09003 * 109.47236 * 210.00660 * 1 2 3 28 28 H 1.08000 * 120.00026 * 352.70286 * 3 2 1 29 29 H 1.08996 * 109.47293 * 90.00482 * 7 6 4 30 30 H 1.09001 * 109.47242 * 210.00244 * 7 6 4 31 31 H 1.08996 * 109.47244 * 330.00196 * 7 6 4 32 32 H 1.09007 * 110.71802 * 271.93572 * 10 8 6 33 33 H 1.09003 * 110.72471 * 35.20713 * 10 8 6 34 34 H 1.09000 * 109.87818 * 97.22204 * 11 10 8 35 35 H 1.08995 * 109.88029 * 218.22822 * 11 10 8 36 36 H 0.96995 * 119.99267 * 179.97438 * 16 15 13 37 37 H 1.09001 * 110.36411 * 265.29546 * 21 12 11 38 38 H 1.08999 * 110.36950 * 142.97004 * 21 12 11 39 39 H 1.09002 * 115.55357 * 146.97449 * 22 2 1 40 40 H 1.08995 * 117.49517 * 359.97438 * 23 22 2 41 41 H 1.08994 * 117.49572 * 145.01800 * 23 22 2 42 42 H 1.08998 * 117.50076 * 214.97586 * 24 22 2 43 43 H 1.09005 * 117.50007 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6340 1.1568 0.1617 5 8 4.2227 0.1205 0.4037 6 7 4.3213 2.3100 0.0418 7 6 3.6123 3.5583 -0.2501 8 6 5.7775 2.3149 0.2023 9 1 6.1411 1.3260 0.4812 10 6 6.4774 2.8219 -1.0862 11 6 7.8064 3.3981 -0.5539 12 7 7.6078 3.7106 0.8689 13 6 8.5561 4.2237 1.7132 14 1 8.2884 4.4983 2.7228 15 6 9.8614 4.3907 1.2714 16 7 10.1580 4.1911 0.0047 17 14 11.1969 4.8986 2.4747 18 1 11.8968 3.6891 2.9769 19 1 12.1708 5.7848 1.7881 20 1 10.5848 5.6258 3.6156 21 6 6.2185 3.3813 1.2359 22 6 2.2604 -1.3051 0.0006 23 6 1.4386 -2.5954 -0.0298 24 6 2.1611 -2.1776 1.2535 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 0.8901 0.5138 27 1 -0.3634 -0.8899 0.5139 28 1 1.6386 2.0833 -0.1188 29 1 3.3242 4.0395 0.6845 30 1 4.2653 4.2235 -0.8150 31 1 2.7200 3.3406 -0.8369 32 1 6.6628 1.9971 -1.7743 33 1 5.8844 3.6003 -1.5664 34 1 8.6009 2.6600 -0.6639 35 1 8.0637 4.3041 -1.1025 36 1 11.0701 4.3082 -0.3040 37 1 5.5865 4.2662 1.1611 38 1 6.1798 2.9706 2.2448 39 1 3.2096 -1.3003 -0.5354 40 1 0.3530 -2.5001 -0.0497 41 1 1.8472 -3.4393 -0.5854 42 1 3.0447 -2.7471 1.5415 43 1 1.5504 -1.8079 2.0772 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567904957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:26 Heat of formation + Delta-G solvation = 43.004082 kcal Electronic energy + Delta-G solvation = -21937.445113 eV Core-core repulsion = 18792.098751 eV Total energy + Delta-G solvation = -3145.346361 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.99064 -38.16507 -36.96166 -34.70106 -33.48592 -32.05453 -29.32689 -28.38757 -27.31049 -26.48784 -24.53042 -23.33202 -22.38382 -20.98868 -20.09264 -19.04162 -18.12884 -17.22745 -16.91066 -16.15142 -15.40492 -14.93306 -14.63905 -14.28449 -14.11213 -13.66537 -13.39841 -13.12536 -12.92308 -12.74385 -12.38142 -12.33379 -12.27931 -11.92900 -11.65269 -11.62700 -11.38102 -10.93818 -10.87975 -10.81509 -10.70974 -10.39140 -10.21353 -10.06857 -9.77711 -9.70977 -9.26843 -8.96389 -8.57299 -8.20984 -6.82230 -5.71385 -3.04089 1.30637 3.27987 3.41305 3.42601 3.47521 3.49095 3.91564 4.44995 4.52286 4.60453 4.87272 4.95178 5.03757 5.14988 5.28898 5.31546 5.35970 5.39803 5.47138 5.49879 5.61241 5.63155 5.67425 5.76559 5.79412 5.82737 5.94255 6.04800 6.17486 6.24290 6.26271 6.36931 6.49084 6.54238 6.63350 6.75868 7.05712 7.55449 7.63035 7.72806 7.83912 8.25918 8.48060 9.22338 9.82632 10.48468 11.40622 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033183 B = 0.003530 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.609845 B = 7930.995129 C = 8219.389204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.011 4.011 3 C -0.222 4.222 4 C 0.543 3.457 5 O -0.539 6.539 6 N -0.600 5.600 7 C 0.077 3.923 8 C 0.124 3.876 9 H 0.106 0.894 10 C -0.153 4.153 11 C 0.179 3.821 12 N -0.603 5.603 13 C -0.230 4.230 14 H 0.078 0.922 15 C -0.006 4.006 16 N -0.919 5.919 17 Si 0.911 3.089 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.132 3.868 22 C -0.115 4.115 23 C -0.192 4.192 24 C -0.155 4.155 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.129 0.871 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.043 0.957 36 H 0.252 0.748 37 H 0.021 0.979 38 H 0.040 0.960 39 H 0.133 0.867 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.594 -7.109 -2.535 21.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.012 4.012 3 C -0.243 4.243 4 C 0.334 3.666 5 O -0.419 6.419 6 N -0.331 5.331 7 C -0.066 4.066 8 C 0.021 3.979 9 H 0.124 0.876 10 C -0.192 4.192 11 C 0.054 3.946 12 N -0.330 5.330 13 C -0.358 4.358 14 H 0.096 0.904 15 C -0.203 4.203 16 N -0.567 5.567 17 Si 0.742 3.258 18 H -0.216 1.216 19 H -0.218 1.218 20 H -0.206 1.206 21 C 0.004 3.996 22 C -0.133 4.133 23 C -0.229 4.229 24 C -0.192 4.192 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.146 0.854 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.039 0.961 38 H 0.059 0.941 39 H 0.151 0.849 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.035 -7.557 -2.414 21.549 hybrid contribution 0.753 0.564 0.530 1.080 sum -19.282 -6.993 -1.884 20.598 Atomic orbital electron populations 1.20995 0.91303 1.03164 1.02857 1.21794 0.95042 0.93449 0.90966 1.22496 0.93805 0.98524 1.09459 1.18518 0.87645 0.83222 0.77211 1.90731 1.70984 1.31175 1.49031 1.47710 1.07724 1.07714 1.69968 1.21776 0.97107 0.86772 1.00937 1.22409 0.77208 1.01414 0.96917 0.87629 1.23234 0.99379 0.99944 0.96620 1.21138 0.90808 0.98576 0.84081 1.44387 1.06493 1.75076 1.07060 1.19060 0.87959 1.34942 0.93815 0.90377 1.24831 0.97231 1.01789 0.96432 1.69977 1.18524 1.55305 1.12861 0.86108 0.81893 0.77812 0.80027 1.21566 1.21771 1.20619 1.21746 0.87756 0.94206 0.95858 1.21453 1.00504 0.87786 1.03534 1.23146 0.98848 0.98759 1.02155 1.22798 1.02564 1.02586 0.91249 0.90426 0.91039 0.90882 0.85360 0.92650 0.90522 0.91387 0.91999 0.92181 0.93245 0.93909 0.93724 0.96128 0.94130 0.84913 0.88792 0.88748 0.88494 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.92 9.50 36.00 0.34 -0.58 16 2 C -0.01 -0.12 5.80 -101.17 -0.59 -0.70 16 3 C -0.22 -2.65 8.74 -37.81 -0.33 -2.99 16 4 C 0.54 8.64 7.53 -12.67 -0.10 8.55 16 5 O -0.54 -10.19 12.71 5.26 0.07 -10.13 16 6 N -0.60 -9.49 2.91 -172.88 -0.50 -9.99 16 7 C 0.08 0.93 8.72 59.84 0.52 1.46 16 8 C 0.12 2.40 3.45 -65.78 -0.23 2.17 16 9 H 0.11 2.28 7.02 -51.93 -0.36 1.91 16 10 C -0.15 -2.98 6.51 -24.90 -0.16 -3.14 16 11 C 0.18 4.43 5.38 -3.07 -0.02 4.42 16 12 N -0.60 -15.79 3.39 -170.07 -0.58 -16.37 16 13 C -0.23 -6.53 10.27 -15.06 -0.15 -6.68 16 14 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 15 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 16 N -0.92 -27.30 10.36 55.49 0.57 -26.73 16 17 Si 0.91 22.37 29.56 -169.99 -5.02 17.35 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.13 2.84 6.79 -2.53 -0.02 2.82 16 22 C -0.12 -1.40 4.32 -91.77 -0.40 -1.79 16 23 C -0.19 -1.80 9.80 -26.69 -0.26 -2.06 16 24 C -0.15 -1.72 10.24 -26.69 -0.27 -1.99 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.45 8.07 -51.92 -0.42 0.03 16 27 H 0.07 0.48 6.35 -51.93 -0.33 0.15 16 28 H 0.13 1.19 6.33 -52.49 -0.33 0.86 16 29 H 0.05 0.62 8.09 -51.93 -0.42 0.20 16 30 H 0.08 0.97 6.41 -51.93 -0.33 0.64 16 31 H 0.07 0.63 6.18 -51.93 -0.32 0.31 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 1.06 6.39 -51.93 -0.33 0.73 16 34 H 0.05 1.36 7.30 -51.93 -0.38 0.98 16 35 H 0.04 1.15 7.61 -51.93 -0.39 0.76 16 36 H 0.25 7.26 8.31 -40.82 -0.34 6.93 16 37 H 0.02 0.43 7.00 -51.93 -0.36 0.07 16 38 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.13 1.98 6.28 -51.93 -0.33 1.65 16 40 H 0.09 0.72 6.30 -51.93 -0.33 0.39 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 337.13 15.07 5.08 5.08 Total: -1.00 -32.30 337.13 -8.86 -41.16 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.73 Total: 0.42 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -1.75 Total: -0.79 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.51 Total: -53.09 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.07 Total: -10.13 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.30 -8.86 -41.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567904957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.160 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds