Wall clock time and date at job start Tue Mar 31 2020 00:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32996 * 120.00318 * 2 1 4 4 C 1.47094 * 119.99931 * 172.70692 * 3 2 1 5 5 O 1.21615 * 120.00244 * 354.03158 * 4 3 2 6 6 N 1.34778 * 119.99993 * 174.03706 * 4 3 2 7 7 C 1.46496 * 119.99901 * 359.97438 * 6 4 3 8 8 C 1.46506 * 120.00097 * 180.02562 * 6 4 3 9 9 H 1.08996 * 110.88614 * 356.10902 * 8 6 4 10 10 C 1.55147 * 111.00744 * 119.99960 * 8 6 4 11 11 C 1.54323 * 102.94405 * 153.57210 * 10 8 6 12 12 N 1.47014 * 107.27026 * 337.80652 * 11 10 8 13 13 C 1.36941 * 125.64660 * 178.98913 * 12 11 10 14 14 H 1.08002 * 120.00048 * 174.77875 * 13 12 11 15 15 C 1.38815 * 120.00117 * 354.76953 * 13 12 11 16 16 N 1.31620 * 119.99635 * 7.20360 * 15 13 12 17 17 Si 1.86798 * 120.00053 * 187.19941 * 15 13 12 18 18 H 1.48493 * 109.47185 * 94.98298 * 17 15 13 19 19 H 1.48497 * 109.46887 * 214.98528 * 17 15 13 20 20 H 1.48503 * 109.47085 * 334.98352 * 17 15 13 21 21 C 1.47425 * 108.70655 * 358.93909 * 12 11 10 22 22 C 1.50698 * 119.99793 * 179.97438 * 2 1 3 23 23 C 1.53009 * 117.49968 * 1.30589 * 22 2 1 24 24 C 1.52999 * 117.50014 * 292.64497 * 22 2 1 25 25 H 1.09000 * 109.47314 * 89.99930 * 1 2 3 26 26 H 1.09009 * 109.46929 * 330.00343 * 1 2 3 27 27 H 1.09003 * 109.47236 * 210.00660 * 1 2 3 28 28 H 1.08000 * 120.00026 * 352.70286 * 3 2 1 29 29 H 1.08996 * 109.47293 * 90.00482 * 7 6 4 30 30 H 1.09001 * 109.47242 * 210.00244 * 7 6 4 31 31 H 1.08996 * 109.47244 * 330.00196 * 7 6 4 32 32 H 1.09007 * 110.71802 * 271.93572 * 10 8 6 33 33 H 1.09003 * 110.72471 * 35.20713 * 10 8 6 34 34 H 1.09000 * 109.87818 * 97.22204 * 11 10 8 35 35 H 1.08995 * 109.88029 * 218.22822 * 11 10 8 36 36 H 0.96995 * 119.99267 * 179.97438 * 16 15 13 37 37 H 1.09001 * 110.36411 * 265.29546 * 21 12 11 38 38 H 1.08999 * 110.36950 * 142.97004 * 21 12 11 39 39 H 1.09002 * 115.55357 * 146.97449 * 22 2 1 40 40 H 1.08995 * 117.49517 * 359.97438 * 23 22 2 41 41 H 1.08994 * 117.49572 * 145.01800 * 23 22 2 42 42 H 1.08998 * 117.50076 * 214.97586 * 24 22 2 43 43 H 1.09005 * 117.50007 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6340 1.1568 0.1617 5 8 4.2227 0.1205 0.4037 6 7 4.3213 2.3100 0.0418 7 6 3.6123 3.5583 -0.2501 8 6 5.7775 2.3149 0.2023 9 1 6.1411 1.3260 0.4812 10 6 6.4774 2.8219 -1.0862 11 6 7.8064 3.3981 -0.5539 12 7 7.6078 3.7106 0.8689 13 6 8.5561 4.2237 1.7132 14 1 8.2884 4.4983 2.7228 15 6 9.8614 4.3907 1.2714 16 7 10.1580 4.1911 0.0047 17 14 11.1969 4.8986 2.4747 18 1 11.8968 3.6891 2.9769 19 1 12.1708 5.7848 1.7881 20 1 10.5848 5.6258 3.6156 21 6 6.2185 3.3813 1.2359 22 6 2.2604 -1.3051 0.0006 23 6 1.4386 -2.5954 -0.0298 24 6 2.1611 -2.1776 1.2535 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 0.8901 0.5138 27 1 -0.3634 -0.8899 0.5139 28 1 1.6386 2.0833 -0.1188 29 1 3.3242 4.0395 0.6845 30 1 4.2653 4.2235 -0.8150 31 1 2.7200 3.3406 -0.8369 32 1 6.6628 1.9971 -1.7743 33 1 5.8844 3.6003 -1.5664 34 1 8.6009 2.6600 -0.6639 35 1 8.0637 4.3041 -1.1025 36 1 11.0701 4.3082 -0.3040 37 1 5.5865 4.2662 1.1611 38 1 6.1798 2.9706 2.2448 39 1 3.2096 -1.3003 -0.5354 40 1 0.3530 -2.5001 -0.0497 41 1 1.8472 -3.4393 -0.5854 42 1 3.0447 -2.7471 1.5415 43 1 1.5504 -1.8079 2.0772 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567904957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:25 Heat of formation + Delta-G solvation = 23.948916 kcal Electronic energy + Delta-G solvation = -21938.271407 eV Core-core repulsion = 18792.098751 eV Total energy + Delta-G solvation = -3146.172655 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.21904 -39.42057 -38.30641 -36.18800 -34.46326 -33.88282 -31.18794 -29.65296 -28.51462 -27.73541 -26.40499 -24.39236 -23.20614 -22.29009 -22.05502 -20.40248 -19.11806 -18.92352 -18.41843 -17.27988 -16.76372 -16.43369 -16.10809 -15.89655 -15.46850 -14.82208 -14.36097 -14.25052 -14.12755 -14.03985 -13.93032 -13.70199 -13.57885 -13.11642 -12.95681 -12.93514 -12.76989 -12.45896 -12.33512 -12.18670 -12.06640 -12.02424 -11.83151 -11.64649 -11.51617 -11.23432 -10.72598 -10.44097 -9.89418 -9.48616 -8.93421 -7.89320 -5.25065 0.38890 1.44365 1.47474 1.55955 2.03916 2.29864 2.49082 3.07090 3.29735 3.59320 3.66322 3.71462 3.91657 3.97570 4.05503 4.13333 4.19408 4.27436 4.31201 4.44807 4.54660 4.63570 4.65303 4.71828 4.77015 4.80724 4.85436 4.92016 4.98225 5.01824 5.09681 5.15885 5.25379 5.28995 5.40538 5.46313 5.57598 5.59317 5.68812 5.74018 6.15085 6.55092 7.05462 7.28036 7.71453 8.36300 9.21498 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033183 B = 0.003530 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.609845 B = 7930.995129 C = 8219.389204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.004 3.996 3 C -0.238 4.238 4 C 0.533 3.467 5 O -0.582 6.582 6 N -0.601 5.601 7 C 0.071 3.929 8 C 0.141 3.859 9 H 0.075 0.925 10 C -0.134 4.134 11 C 0.189 3.811 12 N -0.625 5.625 13 C -0.248 4.248 14 H 0.083 0.917 15 C -0.063 4.063 16 N -0.949 5.949 17 Si 0.980 3.020 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.266 1.266 21 C 0.134 3.866 22 C -0.143 4.143 23 C -0.163 4.163 24 C -0.166 4.166 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.162 0.838 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.010 0.990 35 H 0.015 0.985 36 H 0.248 0.752 37 H 0.042 0.958 38 H 0.032 0.968 39 H 0.096 0.904 40 H 0.122 0.878 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.992 -6.751 -2.344 25.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.002 3.998 3 C -0.259 4.259 4 C 0.327 3.673 5 O -0.464 6.464 6 N -0.332 5.332 7 C -0.070 4.070 8 C 0.035 3.965 9 H 0.093 0.907 10 C -0.173 4.173 11 C 0.063 3.937 12 N -0.352 5.352 13 C -0.377 4.377 14 H 0.101 0.899 15 C -0.256 4.256 16 N -0.597 5.597 17 Si 0.808 3.192 18 H -0.216 1.216 19 H -0.218 1.218 20 H -0.190 1.190 21 C 0.008 3.992 22 C -0.161 4.161 23 C -0.200 4.200 24 C -0.203 4.203 25 H 0.115 0.885 26 H 0.106 0.894 27 H 0.102 0.898 28 H 0.180 0.820 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.122 0.878 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.028 0.972 35 H 0.033 0.967 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.114 0.886 40 H 0.140 0.860 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -23.490 -7.184 -2.217 24.664 hybrid contribution 1.772 0.366 0.478 1.871 sum -21.718 -6.818 -1.739 22.829 Atomic orbital electron populations 1.21091 0.87928 1.04574 1.04389 1.22182 0.97147 0.92200 0.88254 1.22511 0.91021 1.00493 1.11843 1.19314 0.89426 0.82376 0.76205 1.90726 1.72171 1.32646 1.50880 1.47730 1.05972 1.09415 1.70104 1.22054 0.97912 0.84937 1.02131 1.21855 0.80025 0.98904 0.95693 0.90658 1.23036 0.96795 1.00631 0.96798 1.20861 0.92606 0.96382 0.83815 1.44670 1.08048 1.75024 1.07484 1.19455 0.88942 1.34843 0.94412 0.89936 1.25707 0.99419 1.02372 0.98140 1.70190 1.18532 1.56412 1.14561 0.85036 0.78727 0.77287 0.78144 1.21603 1.21788 1.19007 1.21841 0.85929 0.95450 0.96023 1.21385 1.00339 0.90100 1.04235 1.23242 0.99980 0.96913 0.99859 1.22829 1.02773 1.02705 0.91991 0.88543 0.89353 0.89800 0.82028 0.91466 0.90986 0.87796 0.91230 0.89528 0.97165 0.96660 0.94231 0.94031 0.95006 0.88590 0.86008 0.88370 0.90055 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 9.50 71.24 0.68 -0.55 16 2 C 0.00 0.08 5.80 -17.62 -0.10 -0.02 16 3 C -0.24 -5.09 8.74 23.43 0.20 -4.88 16 4 C 0.53 16.69 7.53 86.57 0.65 17.34 16 5 O -0.58 -22.81 12.71 -4.08 -0.05 -22.86 16 6 N -0.60 -18.37 2.91 -819.12 -2.38 -20.76 16 7 C 0.07 1.51 8.72 127.77 1.11 2.62 16 8 C 0.14 5.50 3.45 46.38 0.16 5.66 16 9 H 0.08 3.41 7.02 -2.39 -0.02 3.40 16 10 C -0.13 -5.25 6.51 31.78 0.21 -5.04 16 11 C 0.19 9.74 5.38 86.73 0.47 10.20 16 12 N -0.63 -33.63 3.39 -691.99 -2.35 -35.98 16 13 C -0.25 -14.38 10.27 84.03 0.86 -13.52 16 14 H 0.08 4.58 7.84 -2.91 -0.02 4.56 16 15 C -0.06 -3.69 5.48 84.86 0.46 -3.22 16 16 N -0.95 -58.36 10.36 21.65 0.22 -58.13 16 17 Si 0.98 46.76 29.56 68.60 2.03 48.79 16 18 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 19 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 21 C 0.13 5.81 6.79 86.86 0.59 6.40 16 22 C -0.14 -3.35 4.32 -11.54 -0.05 -3.40 16 23 C -0.16 -2.70 9.80 30.62 0.30 -2.40 16 24 C -0.17 -3.57 10.24 30.62 0.31 -3.26 16 25 H 0.10 0.68 8.14 -2.39 -0.02 0.67 16 26 H 0.09 0.65 8.07 -2.38 -0.02 0.63 16 27 H 0.08 0.69 6.35 -2.39 -0.02 0.67 16 28 H 0.16 2.26 6.33 -2.91 -0.02 2.24 16 29 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16 30 H 0.07 1.61 6.41 -2.39 -0.02 1.60 16 31 H 0.10 1.47 6.18 -2.39 -0.01 1.46 16 32 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 33 H 0.09 2.95 6.39 -2.39 -0.02 2.94 16 34 H 0.01 0.59 7.30 -2.39 -0.02 0.57 16 35 H 0.02 0.86 7.61 -2.39 -0.02 0.84 16 36 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 37 H 0.04 1.66 7.00 -2.39 -0.02 1.64 16 38 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.10 3.01 6.28 -2.39 -0.01 2.99 16 40 H 0.12 1.35 6.30 -2.39 -0.02 1.33 16 41 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -74.45 337.13 4.32 -70.13 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.99 Total: 12.87 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 5.86 Total: 5.94 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -4.51 Total: -114.87 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.05 Total: -22.86 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -74.45 4.32 -70.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567904957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.077 kcal (2) G-P(sol) polarization free energy of solvation -74.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds