Wall clock time and date at job start Tue Mar 31 2020 00:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32991 * 120.00253 * 2 1 4 4 C 1.47103 * 119.99968 * 186.35391 * 3 2 1 5 5 O 1.21607 * 120.00237 * 5.90689 * 4 3 2 6 6 N 1.34783 * 119.99719 * 185.90667 * 4 3 2 7 7 C 1.46496 * 119.99904 * 0.02562 * 6 4 3 8 8 C 1.46496 * 119.99737 * 180.02562 * 6 4 3 9 9 H 1.09002 * 110.64206 * 358.31232 * 8 6 4 10 10 C 1.55158 * 110.71846 * 234.97522 * 8 6 4 11 11 C 1.54906 * 101.58014 * 277.13736 * 10 8 6 12 12 N 1.47419 * 104.83511 * 322.98995 * 11 10 8 13 13 C 1.36941 * 125.65442 * 204.16289 * 12 11 10 14 14 H 1.07993 * 120.00536 * 179.97438 * 13 12 11 15 15 C 1.38817 * 119.99450 * 359.95631 * 13 12 11 16 16 N 1.31616 * 119.99952 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99761 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47068 * 60.00556 * 17 15 13 19 19 H 1.48504 * 109.46930 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47411 * 300.00188 * 17 15 13 21 21 C 1.47030 * 108.70293 * 24.12985 * 12 11 10 22 22 C 1.50700 * 119.99532 * 179.97438 * 2 1 3 23 23 C 1.52999 * 117.52161 * 358.14666 * 22 2 1 24 24 C 1.53005 * 117.49879 * 66.77905 * 22 2 1 25 25 H 1.09000 * 109.47370 * 270.00191 * 1 2 3 26 26 H 1.08999 * 109.46842 * 29.99601 * 1 2 3 27 27 H 1.08997 * 109.47490 * 149.99865 * 1 2 3 28 28 H 1.08000 * 120.00017 * 6.35883 * 3 2 1 29 29 H 1.08996 * 109.47394 * 90.00592 * 7 6 4 30 30 H 1.09000 * 109.47077 * 210.00195 * 7 6 4 31 31 H 1.09000 * 109.47479 * 329.99961 * 7 6 4 32 32 H 1.08997 * 111.00339 * 35.21439 * 10 8 6 33 33 H 1.09003 * 111.00605 * 159.06631 * 10 8 6 34 34 H 1.08999 * 110.36958 * 204.15082 * 11 10 8 35 35 H 1.09004 * 110.46018 * 81.87824 * 11 10 8 36 36 H 0.97005 * 119.99875 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.88229 * 239.52337 * 21 12 11 38 38 H 1.09000 * 109.88077 * 118.35500 * 21 12 11 39 39 H 1.09003 * 115.54967 * 212.44363 * 22 2 1 40 40 H 1.08994 * 117.49961 * 214.96618 * 23 22 2 41 41 H 1.08993 * 117.49621 * 359.97438 * 23 22 2 42 42 H 1.09000 * 117.49869 * 359.97120 * 24 22 2 43 43 H 1.09003 * 117.50025 * 144.99214 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6363 1.1555 -0.1410 5 8 4.2283 0.1172 -0.3649 6 7 4.3217 2.3100 -0.0219 7 6 3.6085 3.5607 0.2484 8 6 5.7798 2.3139 -0.1629 9 1 6.1524 1.3034 -0.3310 10 6 6.4501 2.9500 1.0835 11 6 6.3476 4.4603 0.7549 12 7 6.5674 4.5457 -0.7003 13 6 7.0245 5.6461 -1.3753 14 1 7.1529 5.6075 -2.4469 15 6 7.3226 6.8112 -0.6821 16 7 7.1664 6.8581 0.6239 17 14 7.9469 8.3119 -1.6026 18 1 6.9328 8.7377 -2.6005 19 1 8.1899 9.4169 -0.6408 20 1 9.2146 7.9741 -2.2983 21 6 6.2153 3.2536 -1.3070 22 6 2.2604 -1.3052 0.0006 23 6 1.4393 -2.5954 0.0450 24 6 2.1502 -2.1851 -1.2463 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5138 28 1 1.6371 2.0842 0.1036 29 1 3.5297 3.7086 1.3254 30 1 4.1553 4.3936 -0.1936 31 1 2.6098 3.5107 -0.1855 32 1 5.8961 2.7090 1.9907 33 1 7.4912 2.6386 1.1690 34 1 7.1177 5.0177 1.2882 35 1 5.3588 4.8400 1.0121 36 1 7.3750 7.6722 1.1084 37 1 7.0819 2.8364 -1.8198 38 1 5.3936 3.3861 -2.0108 39 1 3.2142 -1.2972 0.5282 40 1 1.8529 -3.4362 0.6018 41 1 0.3540 -2.5004 0.0743 42 1 1.5323 -1.8202 -2.0668 43 1 3.0314 -2.7560 -1.5390 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567904958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:30 Heat of formation + Delta-G solvation = 48.945021 kcal Electronic energy + Delta-G solvation = -22226.273803 eV Core-core repulsion = 19081.185060 eV Total energy + Delta-G solvation = -3145.088743 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.99178 -38.24016 -36.97606 -34.31947 -33.43064 -32.01212 -29.34796 -28.32649 -27.64721 -26.02656 -24.43061 -23.37146 -22.37008 -21.05374 -20.14344 -18.87182 -18.05395 -17.14445 -16.91458 -16.08962 -15.39583 -14.98450 -14.64210 -14.34039 -13.83368 -13.60818 -13.47942 -13.17758 -12.81150 -12.55065 -12.26890 -12.16468 -11.90447 -11.73658 -11.60323 -11.54091 -11.34856 -11.07406 -10.90349 -10.83268 -10.71343 -10.43923 -10.16669 -10.06657 -9.85129 -9.53289 -9.15719 -8.89547 -8.64776 -8.11024 -6.85069 -5.66858 -3.08773 1.38258 3.39028 3.42099 3.44118 3.45097 3.48589 3.94990 4.48131 4.50189 4.68561 4.92034 4.99200 5.07537 5.24406 5.35624 5.41229 5.44669 5.49878 5.53230 5.55261 5.63580 5.68913 5.76194 5.83191 5.90848 5.98570 6.05817 6.20720 6.29952 6.32990 6.35358 6.44531 6.55463 6.59623 6.65042 6.76115 7.13412 7.47660 7.61306 7.82696 7.86840 8.34420 8.55341 9.20466 9.80968 10.45851 11.36494 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038363 B = 0.003669 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.687583 B = 7629.428662 C = 7781.854263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.015 4.015 3 C -0.219 4.219 4 C 0.543 3.457 5 O -0.549 6.549 6 N -0.591 5.591 7 C 0.070 3.930 8 C 0.126 3.874 9 H 0.099 0.901 10 C -0.154 4.154 11 C 0.145 3.855 12 N -0.603 5.603 13 C -0.223 4.223 14 H 0.076 0.924 15 C -0.010 4.010 16 N -0.922 5.922 17 Si 0.914 3.086 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.127 3.873 22 C -0.114 4.114 23 C -0.193 4.193 24 C -0.156 4.156 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.130 0.870 29 H 0.052 0.948 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.022 0.978 36 H 0.252 0.748 37 H 0.032 0.968 38 H 0.026 0.974 39 H 0.135 0.865 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.869 -13.216 1.022 18.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.016 4.016 3 C -0.239 4.239 4 C 0.334 3.666 5 O -0.430 6.430 6 N -0.322 5.322 7 C -0.072 4.072 8 C 0.023 3.977 9 H 0.117 0.883 10 C -0.194 4.194 11 C 0.020 3.980 12 N -0.330 5.330 13 C -0.351 4.351 14 H 0.094 0.906 15 C -0.205 4.205 16 N -0.571 5.571 17 Si 0.745 3.255 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.000 4.000 22 C -0.132 4.132 23 C -0.229 4.229 24 C -0.193 4.193 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.147 0.853 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.039 0.961 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.044 0.956 39 H 0.152 0.848 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.473 -13.490 0.943 18.397 hybrid contribution 0.243 1.053 -0.458 1.173 sum -12.230 -12.438 0.485 17.450 Atomic orbital electron populations 1.20983 0.91354 1.03094 1.02834 1.21766 0.95015 0.93393 0.91475 1.22542 0.93866 0.98576 1.08947 1.18520 0.87772 0.83212 0.77097 1.90683 1.70976 1.31150 1.50148 1.47700 1.07292 1.07619 1.69551 1.22101 0.96716 0.87514 1.00898 1.22105 0.78582 1.00128 0.96911 0.88314 1.23339 0.99634 1.00480 0.95929 1.22116 1.01075 0.89567 0.85213 1.44543 1.76888 1.08351 1.03179 1.19036 1.36011 0.88757 0.91328 0.90586 1.24768 1.01907 0.98015 0.95840 1.69791 1.54763 1.26989 1.05533 0.86158 0.78736 0.82269 0.78351 1.21252 1.21601 1.21197 1.21643 0.97046 0.87391 0.93908 1.21484 1.00547 0.87707 1.03429 1.23124 0.98965 0.98886 1.01972 1.22780 1.02573 1.02681 0.91302 0.90457 0.91047 0.90982 0.85273 0.92909 0.88111 0.92134 0.92123 0.91145 0.87734 0.96055 0.93702 0.95056 0.95593 0.84764 0.88816 0.88813 0.89206 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 9.49 36.01 0.34 -0.69 16 2 C -0.01 -0.17 5.81 -101.17 -0.59 -0.76 16 3 C -0.22 -2.90 8.84 -37.81 -0.33 -3.23 16 4 C 0.54 9.09 7.54 -12.66 -0.10 9.00 16 5 O -0.55 -10.30 12.64 5.27 0.07 -10.23 16 6 N -0.59 -10.24 2.82 -173.24 -0.49 -10.73 16 7 C 0.07 1.13 8.29 59.84 0.50 1.62 16 8 C 0.13 2.41 3.58 -66.10 -0.24 2.18 16 9 H 0.10 1.89 6.99 -51.93 -0.36 1.53 16 10 C -0.15 -3.01 6.53 -24.58 -0.16 -3.17 16 11 C 0.14 3.40 5.00 -2.53 -0.01 3.38 16 12 N -0.60 -15.11 2.97 -170.07 -0.51 -15.61 16 13 C -0.22 -6.12 10.27 -15.06 -0.15 -6.27 16 14 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 15 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 16 N -0.92 -26.21 10.09 55.49 0.56 -25.65 16 17 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 21 C 0.13 2.73 6.25 -3.06 -0.02 2.72 16 22 C -0.11 -1.42 4.38 -91.77 -0.40 -1.82 16 23 C -0.19 -1.85 9.79 -26.73 -0.26 -2.11 16 24 C -0.16 -1.74 10.23 -26.73 -0.27 -2.01 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 27 H 0.07 0.52 6.38 -51.93 -0.33 0.19 16 28 H 0.13 1.46 6.17 -52.49 -0.32 1.13 16 29 H 0.05 0.80 7.99 -51.93 -0.41 0.38 16 30 H 0.10 1.96 5.19 -51.93 -0.27 1.69 16 31 H 0.06 0.80 6.03 -51.93 -0.31 0.48 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.10 2.81 5.87 -51.93 -0.30 2.50 16 35 H 0.02 0.51 5.54 -51.93 -0.29 0.22 16 36 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.03 0.57 8.04 -51.93 -0.42 0.15 16 39 H 0.13 2.02 6.17 -51.93 -0.32 1.70 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 0.75 6.32 -51.93 -0.33 0.42 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 332.78 15.07 5.01 5.01 Total: -1.00 -30.08 332.78 -8.77 -38.86 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.60 Total: 3.12 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -1.80 Total: -1.54 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.43 Total: -51.99 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.07 Total: -10.23 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.08 -8.77 -38.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567904958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.801 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds