Wall clock time and date at job start Tue Mar 31 2020 00:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32991 * 120.00253 * 2 1 4 4 C 1.47103 * 119.99968 * 186.35391 * 3 2 1 5 5 O 1.21607 * 120.00237 * 5.90689 * 4 3 2 6 6 N 1.34783 * 119.99719 * 185.90667 * 4 3 2 7 7 C 1.46496 * 119.99904 * 0.02562 * 6 4 3 8 8 C 1.46496 * 119.99737 * 180.02562 * 6 4 3 9 9 H 1.09002 * 110.64206 * 358.31232 * 8 6 4 10 10 C 1.55158 * 110.71846 * 234.97522 * 8 6 4 11 11 C 1.54906 * 101.58014 * 277.13736 * 10 8 6 12 12 N 1.47419 * 104.83511 * 322.98995 * 11 10 8 13 13 C 1.36941 * 125.65442 * 204.16289 * 12 11 10 14 14 H 1.07993 * 120.00536 * 179.97438 * 13 12 11 15 15 C 1.38817 * 119.99450 * 359.95631 * 13 12 11 16 16 N 1.31616 * 119.99952 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99761 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47068 * 60.00556 * 17 15 13 19 19 H 1.48504 * 109.46930 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47411 * 300.00188 * 17 15 13 21 21 C 1.47030 * 108.70293 * 24.12985 * 12 11 10 22 22 C 1.50700 * 119.99532 * 179.97438 * 2 1 3 23 23 C 1.52999 * 117.52161 * 358.14666 * 22 2 1 24 24 C 1.53005 * 117.49879 * 66.77905 * 22 2 1 25 25 H 1.09000 * 109.47370 * 270.00191 * 1 2 3 26 26 H 1.08999 * 109.46842 * 29.99601 * 1 2 3 27 27 H 1.08997 * 109.47490 * 149.99865 * 1 2 3 28 28 H 1.08000 * 120.00017 * 6.35883 * 3 2 1 29 29 H 1.08996 * 109.47394 * 90.00592 * 7 6 4 30 30 H 1.09000 * 109.47077 * 210.00195 * 7 6 4 31 31 H 1.09000 * 109.47479 * 329.99961 * 7 6 4 32 32 H 1.08997 * 111.00339 * 35.21439 * 10 8 6 33 33 H 1.09003 * 111.00605 * 159.06631 * 10 8 6 34 34 H 1.08999 * 110.36958 * 204.15082 * 11 10 8 35 35 H 1.09004 * 110.46018 * 81.87824 * 11 10 8 36 36 H 0.97005 * 119.99875 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.88229 * 239.52337 * 21 12 11 38 38 H 1.09000 * 109.88077 * 118.35500 * 21 12 11 39 39 H 1.09003 * 115.54967 * 212.44363 * 22 2 1 40 40 H 1.08994 * 117.49961 * 214.96618 * 23 22 2 41 41 H 1.08993 * 117.49621 * 359.97438 * 23 22 2 42 42 H 1.09000 * 117.49869 * 359.97120 * 24 22 2 43 43 H 1.09003 * 117.50025 * 144.99214 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6363 1.1555 -0.1410 5 8 4.2283 0.1172 -0.3649 6 7 4.3217 2.3100 -0.0219 7 6 3.6085 3.5607 0.2484 8 6 5.7798 2.3139 -0.1629 9 1 6.1524 1.3034 -0.3310 10 6 6.4501 2.9500 1.0835 11 6 6.3476 4.4603 0.7549 12 7 6.5674 4.5457 -0.7003 13 6 7.0245 5.6461 -1.3753 14 1 7.1529 5.6075 -2.4469 15 6 7.3226 6.8112 -0.6821 16 7 7.1664 6.8581 0.6239 17 14 7.9469 8.3119 -1.6026 18 1 6.9328 8.7377 -2.6005 19 1 8.1899 9.4169 -0.6408 20 1 9.2146 7.9741 -2.2983 21 6 6.2153 3.2536 -1.3070 22 6 2.2604 -1.3052 0.0006 23 6 1.4393 -2.5954 0.0450 24 6 2.1502 -2.1851 -1.2463 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5138 28 1 1.6371 2.0842 0.1036 29 1 3.5297 3.7086 1.3254 30 1 4.1553 4.3936 -0.1936 31 1 2.6098 3.5107 -0.1855 32 1 5.8961 2.7090 1.9907 33 1 7.4912 2.6386 1.1690 34 1 7.1177 5.0177 1.2882 35 1 5.3588 4.8400 1.0121 36 1 7.3750 7.6722 1.1084 37 1 7.0819 2.8364 -1.8198 38 1 5.3936 3.3861 -2.0108 39 1 3.2142 -1.2972 0.5282 40 1 1.8529 -3.4362 0.6018 41 1 0.3540 -2.5004 0.0743 42 1 1.5323 -1.8202 -2.0668 43 1 3.0314 -2.7560 -1.5390 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567904958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:29 Heat of formation + Delta-G solvation = 32.774385 kcal Electronic energy + Delta-G solvation = -22226.975014 eV Core-core repulsion = 19081.185060 eV Total energy + Delta-G solvation = -3145.789954 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.31468 -39.51534 -38.26442 -35.90582 -34.46174 -33.76895 -31.15294 -29.79100 -28.74067 -27.55555 -26.21233 -24.46540 -23.19165 -22.33490 -22.03353 -20.26516 -19.16598 -18.86389 -18.40641 -17.31041 -16.75653 -16.50283 -16.21088 -15.72423 -15.44841 -14.80144 -14.57240 -14.28755 -13.98986 -13.81024 -13.71515 -13.55633 -13.29581 -13.20862 -13.05993 -12.95268 -12.75212 -12.48039 -12.40529 -12.17436 -12.06290 -11.92456 -11.80603 -11.61982 -11.41702 -11.19486 -10.69142 -10.39539 -9.89625 -9.48023 -8.87539 -7.75885 -5.20302 0.38351 1.48225 1.50584 1.57040 2.09538 2.28813 2.50656 3.08615 3.34016 3.58630 3.66067 3.76050 3.89897 4.00706 4.06532 4.15203 4.25573 4.29891 4.31209 4.48965 4.62792 4.63920 4.69835 4.71055 4.76007 4.83836 4.88622 4.93341 4.98812 5.02255 5.10478 5.12775 5.26645 5.29674 5.44772 5.47816 5.57919 5.65162 5.75008 5.83166 6.31705 6.55266 7.12005 7.26243 7.77591 8.42041 9.25033 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038363 B = 0.003669 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.687583 B = 7629.428662 C = 7781.854263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.006 3.994 3 C -0.245 4.245 4 C 0.537 3.463 5 O -0.576 6.576 6 N -0.596 5.596 7 C 0.078 3.922 8 C 0.139 3.861 9 H 0.099 0.901 10 C -0.139 4.139 11 C 0.152 3.848 12 N -0.618 5.618 13 C -0.242 4.242 14 H 0.076 0.924 15 C -0.059 4.059 16 N -0.944 5.944 17 Si 0.979 3.021 18 H -0.279 1.279 19 H -0.292 1.292 20 H -0.281 1.281 21 C 0.129 3.871 22 C -0.144 4.144 23 C -0.164 4.164 24 C -0.163 4.163 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.151 0.849 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.016 0.984 36 H 0.248 0.752 37 H 0.029 0.971 38 H 0.022 0.978 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.217 -14.177 0.854 20.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.004 3.996 3 C -0.265 4.265 4 C 0.331 3.669 5 O -0.459 6.459 6 N -0.327 5.327 7 C -0.065 4.065 8 C 0.034 3.966 9 H 0.117 0.883 10 C -0.179 4.179 11 C 0.028 3.972 12 N -0.345 5.345 13 C -0.370 4.370 14 H 0.094 0.906 15 C -0.252 4.252 16 N -0.593 5.593 17 Si 0.807 3.193 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.207 1.207 21 C 0.003 3.997 22 C -0.162 4.162 23 C -0.201 4.201 24 C -0.200 4.200 25 H 0.114 0.886 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.168 0.832 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.034 0.966 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.040 0.960 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.137 0.863 42 H 0.117 0.883 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.840 -14.471 0.768 20.742 hybrid contribution 0.950 1.231 -0.421 1.611 sum -13.891 -13.240 0.347 19.193 Atomic orbital electron populations 1.21091 0.88200 1.04479 1.04322 1.22171 0.97028 0.92341 0.88033 1.22506 0.91565 1.00255 1.12211 1.19150 0.89285 0.82332 0.76119 1.90677 1.71902 1.31941 1.51383 1.47741 1.06409 1.08505 1.70072 1.22034 0.97467 0.85611 1.01363 1.21818 0.80235 0.99146 0.95391 0.88297 1.23182 1.00220 0.97569 0.96893 1.21894 0.99436 0.91622 0.84259 1.44735 1.76853 1.08929 1.03993 1.19355 1.36107 0.89881 0.91701 0.90607 1.25542 1.02410 1.00575 0.96704 1.70027 1.55450 1.27198 1.06655 0.85158 0.78252 0.78745 0.77159 1.20480 1.21825 1.20702 1.21683 0.96712 0.86618 0.94692 1.21415 1.00494 0.89630 1.04619 1.23225 0.99974 0.96956 0.99913 1.22833 1.02909 1.02431 0.91840 0.88639 0.89797 0.89513 0.83181 0.92061 0.91732 0.89001 0.90376 0.90971 0.91187 0.96581 0.94250 0.95294 0.96021 0.87993 0.88120 0.86313 0.88309 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 9.49 71.24 0.68 -0.84 16 2 C 0.01 0.13 5.81 -17.62 -0.10 0.03 16 3 C -0.25 -6.03 8.84 23.43 0.21 -5.83 16 4 C 0.54 17.71 7.54 86.57 0.65 18.37 16 5 O -0.58 -21.81 12.64 -4.05 -0.05 -21.86 16 6 N -0.60 -20.46 2.82 -820.24 -2.32 -22.77 16 7 C 0.08 2.43 8.29 127.77 1.06 3.49 16 8 C 0.14 5.32 3.58 46.18 0.17 5.49 16 9 H 0.10 3.82 6.99 -2.39 -0.02 3.81 16 10 C -0.14 -5.46 6.53 31.99 0.21 -5.25 16 11 C 0.15 7.33 5.00 86.86 0.43 7.76 16 12 N -0.62 -31.72 2.97 -691.99 -2.05 -33.78 16 13 C -0.24 -13.50 10.27 84.03 0.86 -12.64 16 14 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 15 C -0.06 -3.31 5.49 84.86 0.47 -2.85 16 16 N -0.94 -54.87 10.09 21.65 0.22 -54.65 16 17 Si 0.98 45.22 29.55 68.60 2.03 47.25 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 C 0.13 5.67 6.25 86.73 0.54 6.22 16 22 C -0.14 -3.37 4.38 -11.54 -0.05 -3.42 16 23 C -0.16 -2.67 9.79 30.60 0.30 -2.37 16 24 C -0.16 -3.37 10.23 30.60 0.31 -3.06 16 25 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.08 0.87 8.07 -2.39 -0.02 0.86 16 27 H 0.09 0.84 6.38 -2.39 -0.02 0.82 16 28 H 0.15 2.95 6.17 -2.91 -0.02 2.94 16 29 H 0.06 1.79 7.99 -2.39 -0.02 1.77 16 30 H 0.06 2.53 5.19 -2.39 -0.01 2.52 16 31 H 0.09 2.25 6.03 -2.39 -0.01 2.24 16 32 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.07 3.89 5.87 -2.39 -0.01 3.88 16 35 H 0.02 0.80 5.54 -2.38 -0.01 0.78 16 36 H 0.25 14.04 8.31 -92.70 -0.77 13.27 16 37 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.02 0.97 8.04 -2.39 -0.02 0.95 16 39 H 0.10 3.11 6.17 -2.39 -0.01 3.09 16 40 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.12 1.36 6.32 -2.39 -0.02 1.34 16 42 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -66.55 332.78 4.56 -61.99 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 1.00 Total: 18.71 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 5.73 Total: 5.10 kcal Atomic # 7 Polarization: -107.05 SS G_CDS: -4.15 Total: -111.20 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.05 Total: -21.86 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -66.55 4.56 -61.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567904958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.766 kcal (2) G-P(sol) polarization free energy of solvation -66.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds