Wall clock time and date at job start Tue Mar 31 2020 00:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32991 * 119.99376 * 2 1 4 4 C 1.47097 * 120.00574 * 352.66651 * 3 2 1 5 5 O 1.21618 * 119.99848 * 353.40583 * 4 3 2 6 6 N 1.34773 * 120.00312 * 173.40352 * 4 3 2 7 7 C 1.46505 * 120.00061 * 0.02562 * 6 4 3 8 8 C 1.46505 * 120.00249 * 179.97438 * 6 4 3 9 9 H 1.09003 * 110.88440 * 356.12530 * 8 6 4 10 10 C 1.55151 * 111.00180 * 120.00299 * 8 6 4 11 11 C 1.54323 * 102.94540 * 82.60985 * 10 8 6 12 12 N 1.47024 * 107.26896 * 22.19486 * 11 10 8 13 13 C 1.36935 * 125.65139 * 181.02318 * 12 11 10 14 14 H 1.08000 * 120.00047 * 185.86022 * 13 12 11 15 15 C 1.38812 * 119.99508 * 5.85528 * 13 12 11 16 16 N 1.31623 * 120.00357 * 7.58965 * 15 13 12 17 17 Si 1.86805 * 119.99670 * 187.30807 * 15 13 12 18 18 H 1.48496 * 109.47373 * 265.29152 * 17 15 13 19 19 H 1.48504 * 109.46995 * 25.29584 * 17 15 13 20 20 H 1.48506 * 109.47026 * 145.29375 * 17 15 13 21 21 C 1.47427 * 108.70022 * 1.28144 * 12 11 10 22 22 C 1.50697 * 120.00061 * 180.02562 * 2 1 3 23 23 C 1.53006 * 117.50066 * 8.62234 * 22 2 1 24 24 C 1.53001 * 59.99932 * 252.50894 * 23 22 2 25 25 H 1.08998 * 109.47155 * 84.37873 * 1 2 3 26 26 H 1.09009 * 109.46506 * 204.37634 * 1 2 3 27 27 H 1.08993 * 109.47287 * 324.37387 * 1 2 3 28 28 H 1.07998 * 119.99542 * 172.66782 * 3 2 1 29 29 H 1.09003 * 109.47038 * 270.00174 * 7 6 4 30 30 H 1.09003 * 109.46733 * 29.99521 * 7 6 4 31 31 H 1.08997 * 109.47415 * 149.99653 * 7 6 4 32 32 H 1.09002 * 110.72427 * 324.24470 * 10 8 6 33 33 H 1.09000 * 110.87127 * 201.04979 * 10 8 6 34 34 H 1.08999 * 109.88371 * 262.77450 * 11 10 8 35 35 H 1.08999 * 110.01125 * 141.67728 * 11 10 8 36 36 H 0.96993 * 119.99784 * 179.72401 * 16 15 13 37 37 H 1.09001 * 110.36365 * 94.49146 * 21 12 11 38 38 H 1.09004 * 110.36511 * 216.80547 * 21 12 11 39 39 H 1.09000 * 115.54860 * 154.33326 * 22 2 1 40 40 H 1.08998 * 117.49700 * 359.97438 * 23 22 2 41 41 H 1.08999 * 117.49600 * 145.02420 * 23 22 2 42 42 H 1.09001 * 117.50403 * 252.51042 * 24 23 22 43 43 H 1.09007 * 117.49852 * 107.48622 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4454 2.4205 -0.1626 5 8 0.2561 2.4119 -0.4166 6 7 2.0977 3.5924 -0.0301 7 6 3.5305 3.6028 0.2753 8 6 1.3743 4.8559 -0.1926 9 1 0.3392 4.6765 -0.4834 10 6 1.4485 5.7095 1.1009 11 6 2.8172 6.4111 0.9741 12 7 3.1746 6.4160 -0.4521 13 6 4.3270 6.9297 -0.9843 14 1 4.4556 6.9706 -2.0558 15 6 5.3298 7.3979 -0.1464 16 7 5.2408 7.2134 1.1538 17 14 6.8097 8.2830 -0.8650 18 1 7.9149 7.3128 -1.0708 19 1 6.4376 8.8930 -2.1668 20 1 7.2529 9.3469 0.0715 21 6 2.0840 5.7819 -1.2149 22 6 2.2605 -1.3051 -0.0006 23 6 1.4518 -2.5878 -0.2046 24 6 2.0262 -2.2567 1.1743 25 1 -0.3633 0.1007 -1.0227 26 1 -0.3633 -0.9362 0.4242 27 1 -0.3633 0.8353 0.5986 28 1 3.2452 1.1557 0.1194 29 1 3.6716 3.6109 1.3562 30 1 3.9981 2.7125 -0.1453 31 1 3.9879 4.4924 -0.1576 32 1 1.4220 5.0728 1.9852 33 1 0.6412 6.4413 1.1301 34 1 3.5686 5.8633 1.5427 35 1 2.7472 7.4347 1.3421 36 1 5.9435 7.5371 1.7387 37 1 1.3934 6.5378 -1.5889 38 1 2.4890 5.1957 -2.0398 39 1 3.2632 -1.2688 -0.4265 40 1 0.3746 -2.4877 -0.3380 41 1 1.9223 -3.3956 -0.7650 42 1 2.8745 -2.8468 1.5211 43 1 1.3269 -1.9388 1.9477 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567904959.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:35 Heat of formation + Delta-G solvation = 45.035361 kcal Electronic energy + Delta-G solvation = -22269.031036 eV Core-core repulsion = 19123.772758 eV Total energy + Delta-G solvation = -3145.258278 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.89015 -38.29800 -37.25124 -34.17544 -33.14934 -32.09292 -29.37401 -28.04096 -27.41913 -25.84755 -24.60822 -23.72673 -22.58068 -20.85451 -20.07071 -18.79911 -17.93380 -17.11188 -16.91925 -15.93562 -15.45861 -15.00338 -14.66980 -14.48712 -13.81980 -13.74869 -13.31300 -12.96222 -12.77010 -12.46834 -12.15025 -11.94182 -11.84938 -11.64669 -11.61317 -11.49173 -11.17463 -11.02857 -10.95299 -10.85848 -10.69901 -10.61926 -10.17954 -10.10799 -9.91858 -9.68446 -9.11387 -8.88345 -8.70250 -8.01885 -6.81653 -5.75065 -3.11879 1.45327 3.36580 3.43563 3.44978 3.48724 3.51551 3.79021 4.42328 4.46185 4.65301 4.74037 4.90337 5.08559 5.22444 5.37929 5.40257 5.45599 5.56022 5.59140 5.66991 5.73500 5.82997 5.84132 5.86576 5.93261 5.94678 6.17088 6.25099 6.27612 6.38679 6.52440 6.56799 6.57459 6.62818 6.69020 6.90814 7.22196 7.46434 7.62738 7.78918 7.98462 8.21211 8.62821 9.16140 9.76494 10.42372 11.33357 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026258 B = 0.004044 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.073337 B = 6921.537141 C = 7489.552892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.014 4.014 3 C -0.217 4.217 4 C 0.541 3.459 5 O -0.558 6.558 6 N -0.583 5.583 7 C 0.062 3.938 8 C 0.124 3.876 9 H 0.098 0.902 10 C -0.154 4.154 11 C 0.167 3.833 12 N -0.601 5.601 13 C -0.232 4.232 14 H 0.077 0.923 15 C -0.005 4.005 16 N -0.917 5.917 17 Si 0.909 3.091 18 H -0.289 1.289 19 H -0.282 1.282 20 H -0.291 1.291 21 C 0.124 3.876 22 C -0.129 4.129 23 C -0.173 4.173 24 C -0.168 4.168 25 H 0.077 0.923 26 H 0.050 0.950 27 H 0.089 0.911 28 H 0.128 0.872 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.124 0.876 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.027 0.973 36 H 0.252 0.748 37 H 0.031 0.969 38 H 0.044 0.956 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.068 -15.633 0.038 16.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.016 4.016 3 C -0.237 4.237 4 C 0.332 3.668 5 O -0.440 6.440 6 N -0.314 5.314 7 C -0.081 4.081 8 C 0.019 3.981 9 H 0.116 0.884 10 C -0.193 4.193 11 C 0.043 3.957 12 N -0.328 5.328 13 C -0.360 4.360 14 H 0.095 0.905 15 C -0.201 4.201 16 N -0.564 5.564 17 Si 0.740 3.260 18 H -0.216 1.216 19 H -0.207 1.207 20 H -0.217 1.217 21 C -0.003 4.003 22 C -0.147 4.147 23 C -0.210 4.210 24 C -0.205 4.205 25 H 0.096 0.904 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.146 0.854 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.062 0.938 39 H 0.133 0.867 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.452 -15.490 -0.006 16.780 hybrid contribution 1.128 0.626 -0.229 1.310 sum -5.324 -14.863 -0.235 15.790 Atomic orbital electron populations 1.21108 0.90961 1.01951 1.03564 1.21705 0.96007 0.92203 0.91719 1.22484 1.00674 0.91950 1.08607 1.18495 0.86602 0.84266 0.77411 1.90689 1.15338 1.87544 1.50413 1.47587 1.10487 1.04992 1.68286 1.22285 0.79673 1.05229 1.00874 1.22228 0.96075 0.82837 0.96915 0.88380 1.23206 1.00748 0.98624 0.96748 1.21322 0.90578 0.97938 0.85894 1.44594 1.17169 1.68735 1.02331 1.19029 0.91758 1.33635 0.91575 0.90514 1.24780 0.98333 1.01505 0.95518 1.69953 1.34082 1.50424 1.01906 0.86147 0.82646 0.79303 0.77917 1.21642 1.20711 1.21690 1.21958 0.91124 0.93337 0.93834 1.21265 1.00132 0.88798 1.04535 1.23055 1.00450 0.97806 0.99706 1.22975 1.03646 1.02161 0.91711 0.90442 0.93080 0.89207 0.85394 0.93275 0.92795 0.85775 0.91977 0.91615 0.91398 0.95452 0.93734 0.95116 0.93778 0.86702 0.88064 0.88426 0.88332 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 7.90 36.01 0.28 -1.23 16 2 C -0.01 -0.18 5.81 -101.17 -0.59 -0.77 16 3 C -0.22 -3.14 8.89 -37.81 -0.34 -3.47 16 4 C 0.54 9.52 7.47 -12.67 -0.09 9.43 16 5 O -0.56 -10.75 12.68 5.26 0.07 -10.68 16 6 N -0.58 -10.69 2.91 -172.74 -0.50 -11.19 16 7 C 0.06 1.13 8.46 59.85 0.51 1.64 16 8 C 0.12 2.36 3.66 -65.67 -0.24 2.12 16 9 H 0.10 1.84 7.02 -51.93 -0.36 1.48 16 10 C -0.15 -2.96 6.48 -24.90 -0.16 -3.12 16 11 C 0.17 3.90 4.41 -3.06 -0.01 3.89 16 12 N -0.60 -14.58 1.87 -169.94 -0.32 -14.90 16 13 C -0.23 -6.15 9.78 -15.06 -0.15 -6.30 16 14 H 0.08 2.00 7.84 -52.49 -0.41 1.59 16 15 C 0.00 -0.12 5.45 -17.43 -0.09 -0.22 16 16 N -0.92 -25.53 10.46 55.49 0.58 -24.95 16 17 Si 0.91 21.39 29.56 -169.99 -5.02 16.37 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 C 0.12 2.59 6.43 -2.41 -0.02 2.57 16 22 C -0.13 -1.28 6.01 -91.77 -0.55 -1.84 16 23 C -0.17 -1.41 9.76 -26.73 -0.26 -1.67 16 24 C -0.17 -1.40 10.10 -26.73 -0.27 -1.67 16 25 H 0.08 1.03 8.03 -51.93 -0.42 0.61 16 26 H 0.05 0.52 6.30 -51.92 -0.33 0.19 16 27 H 0.09 1.34 6.17 -51.93 -0.32 1.01 16 28 H 0.13 1.68 6.17 -52.49 -0.32 1.36 16 29 H 0.05 0.89 7.90 -51.93 -0.41 0.48 16 30 H 0.05 0.84 6.02 -51.93 -0.31 0.53 16 31 H 0.12 2.74 4.74 -51.93 -0.25 2.49 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.72 5.85 -51.93 -0.30 1.42 16 35 H 0.03 0.71 7.98 -51.93 -0.41 0.29 16 36 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.10 0.81 6.41 -51.93 -0.33 0.48 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 333.27 15.07 5.02 5.02 Total: -1.00 -28.95 333.27 -8.86 -37.81 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.70 Total: 3.17 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -1.98 Total: -0.64 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.24 Total: -51.04 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.07 Total: -10.68 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.95 -8.86 -37.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567904959.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.841 kcal (2) G-P(sol) polarization free energy of solvation -28.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds