Wall clock time and date at job start Tue Mar 31 2020 00:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32993 * 119.99651 * 2 1 4 4 C 1.47105 * 120.00167 * 4.46320 * 3 2 1 5 5 O 1.21611 * 119.99964 * 354.11404 * 4 3 2 6 6 N 1.34773 * 120.00167 * 174.10701 * 4 3 2 7 7 C 1.46509 * 120.00082 * 0.02562 * 6 4 3 8 8 C 1.46501 * 120.00215 * 180.02562 * 6 4 3 9 9 H 1.09002 * 110.63798 * 358.31530 * 8 6 4 10 10 C 1.55153 * 110.72248 * 234.97685 * 8 6 4 11 11 C 1.54907 * 101.58479 * 277.13931 * 10 8 6 12 12 N 1.47428 * 104.82989 * 322.99004 * 11 10 8 13 13 C 1.36942 * 125.64556 * 204.16408 * 12 11 10 14 14 H 1.08002 * 119.99567 * 179.97438 * 13 12 11 15 15 C 1.38814 * 120.00250 * 359.95726 * 13 12 11 16 16 N 1.31619 * 119.99635 * 0.02562 * 15 13 12 17 17 Si 1.86790 * 119.99802 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47675 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47172 * 120.00171 * 17 15 13 20 20 H 1.48505 * 109.47083 * 240.00131 * 17 15 13 21 21 C 1.47023 * 108.70286 * 24.12911 * 12 11 10 22 22 C 1.50698 * 120.00370 * 180.02562 * 2 1 3 23 23 C 1.52999 * 117.49670 * 4.22425 * 22 2 1 24 24 C 1.53008 * 117.49632 * 295.56658 * 22 2 1 25 25 H 1.09002 * 109.47502 * 64.40637 * 1 2 3 26 26 H 1.09001 * 109.47033 * 184.40646 * 1 2 3 27 27 H 1.08999 * 109.47556 * 304.40220 * 1 2 3 28 28 H 1.07997 * 120.00452 * 184.46414 * 3 2 1 29 29 H 1.09001 * 109.46522 * 89.99593 * 7 6 4 30 30 H 1.09001 * 109.46973 * 209.99770 * 7 6 4 31 31 H 1.08998 * 109.46867 * 329.99948 * 7 6 4 32 32 H 1.08997 * 111.00431 * 35.21618 * 10 8 6 33 33 H 1.09005 * 111.00398 * 159.06133 * 10 8 6 34 34 H 1.08993 * 110.36909 * 204.15364 * 11 10 8 35 35 H 1.09003 * 110.46071 * 81.87292 * 11 10 8 36 36 H 0.96994 * 119.99499 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.88056 * 239.52135 * 21 12 11 38 38 H 1.09000 * 109.88511 * 118.35880 * 21 12 11 39 39 H 1.08993 * 115.54864 * 149.89891 * 22 2 1 40 40 H 1.09002 * 117.49957 * 0.02562 * 23 22 2 41 41 H 1.09001 * 117.49826 * 145.02436 * 23 22 2 42 42 H 1.08998 * 117.49703 * 214.97910 * 24 22 2 43 43 H 1.09004 * 117.49491 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4397 2.4238 0.0991 5 8 0.2238 2.4291 0.0732 6 7 2.1162 3.5833 0.2188 7 6 3.5809 3.5769 0.2497 8 6 1.3870 4.8500 0.3181 9 1 0.3123 4.6810 0.2496 10 6 1.8612 5.8436 -0.7751 11 6 3.1292 6.4454 -0.1196 12 7 2.7969 6.5570 1.3124 13 6 3.3746 7.4248 2.2005 14 1 3.0596 7.4293 3.2336 15 6 4.3651 8.2982 1.7730 16 7 4.7487 8.2928 0.5139 17 14 5.1535 9.4813 2.9845 18 1 4.5497 9.2900 4.3276 19 1 6.6132 9.2175 3.0554 20 1 4.9241 10.8775 2.5336 21 6 1.7420 5.5830 1.6289 22 6 2.2606 -1.3050 -0.0006 23 6 1.4417 -2.5935 -0.1011 24 6 2.1066 -2.2102 1.2234 25 1 -0.3634 0.4439 -0.9268 26 1 -0.3633 -1.0246 0.0790 27 1 -0.3634 0.5806 0.8479 28 1 3.2494 1.1534 -0.0728 29 1 3.9660 3.6681 -0.7659 30 1 3.9353 4.4153 0.8494 31 1 3.9310 2.6426 0.6885 32 1 2.1097 5.3196 -1.6980 33 1 1.1112 6.6139 -0.9548 34 1 3.3416 7.4294 -0.5374 35 1 3.9824 5.7819 -0.2604 36 1 5.4411 8.9029 0.2153 37 1 0.8633 6.1004 2.0141 38 1 2.1067 4.8681 2.3665 39 1 3.2324 -1.2865 -0.4938 40 1 0.3580 -2.4973 -0.1673 41 1 1.8750 -3.4229 -0.6602 42 1 2.9770 -2.7875 1.5351 43 1 1.4605 -1.8615 2.0291 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567904960.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:39 Heat of formation + Delta-G solvation = 47.449640 kcal Electronic energy + Delta-G solvation = -22088.521962 eV Core-core repulsion = 18943.368375 eV Total energy + Delta-G solvation = -3145.153587 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -39.98067 -38.34913 -37.26298 -34.35966 -33.21217 -32.03105 -29.31101 -28.12299 -27.59153 -26.00724 -24.63782 -23.74384 -22.63062 -20.83920 -20.13767 -18.80502 -18.05564 -17.19059 -16.94611 -16.02860 -15.61101 -15.02970 -14.67757 -14.64940 -13.74679 -13.73219 -13.47963 -13.00168 -12.64595 -12.50357 -12.27573 -12.14630 -11.85939 -11.74791 -11.66397 -11.54285 -11.31706 -11.04903 -10.97165 -10.89374 -10.76882 -10.66758 -10.19304 -10.09716 -9.85256 -9.53823 -9.19744 -8.98253 -8.65518 -8.11497 -6.85205 -5.67347 -3.09184 1.38868 3.37033 3.39256 3.42770 3.44701 3.46593 3.71086 4.35860 4.47942 4.60618 4.67372 4.83279 4.98664 5.12224 5.32162 5.44189 5.48539 5.52165 5.53870 5.62081 5.64263 5.75347 5.81348 5.84067 5.88759 5.90327 5.97817 6.11036 6.28250 6.33567 6.40723 6.49580 6.52926 6.59505 6.64453 6.75547 7.12562 7.47607 7.61860 7.82171 7.86123 8.34059 8.53004 9.20168 9.80624 10.45390 11.36162 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033135 B = 0.003609 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.821160 B = 7756.392864 C = 8063.802838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.012 4.012 3 C -0.219 4.219 4 C 0.543 3.457 5 O -0.553 6.553 6 N -0.590 5.590 7 C 0.070 3.930 8 C 0.126 3.874 9 H 0.099 0.901 10 C -0.154 4.154 11 C 0.144 3.856 12 N -0.603 5.603 13 C -0.221 4.221 14 H 0.077 0.923 15 C -0.011 4.011 16 N -0.921 5.921 17 Si 0.914 3.086 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.127 3.873 22 C -0.130 4.130 23 C -0.177 4.177 24 C -0.165 4.165 25 H 0.080 0.920 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.127 0.873 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.022 0.978 36 H 0.251 0.749 37 H 0.032 0.968 38 H 0.026 0.974 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.000 -18.301 -2.637 18.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.014 4.014 3 C -0.239 4.239 4 C 0.334 3.666 5 O -0.435 6.435 6 N -0.321 5.321 7 C -0.072 4.072 8 C 0.023 3.977 9 H 0.117 0.883 10 C -0.194 4.194 11 C 0.020 3.980 12 N -0.330 5.330 13 C -0.349 4.349 14 H 0.095 0.905 15 C -0.206 4.206 16 N -0.570 5.570 17 Si 0.745 3.255 18 H -0.206 1.206 19 H -0.218 1.218 20 H -0.218 1.218 21 C 0.000 4.000 22 C -0.148 4.148 23 C -0.214 4.214 24 C -0.202 4.202 25 H 0.099 0.901 26 H 0.071 0.929 27 H 0.105 0.895 28 H 0.145 0.855 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.044 0.956 39 H 0.133 0.867 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.453 -18.095 -2.622 18.819 hybrid contribution 0.797 0.668 0.575 1.189 sum -3.656 -17.427 -2.047 17.923 Atomic orbital electron populations 1.21099 0.90805 1.00936 1.04525 1.21738 0.96133 0.92247 0.91308 1.22441 1.00354 0.91928 1.09219 1.18485 0.87128 0.84191 0.76792 1.90715 1.13721 1.87155 1.51860 1.47670 1.07264 1.05994 1.71205 1.22103 0.79274 1.03633 1.02219 1.22112 0.96499 0.82326 0.96799 0.88302 1.23339 1.01423 0.97706 0.96909 1.22120 0.90607 1.01821 0.83451 1.44562 1.41840 1.40209 1.06370 1.19126 1.14343 1.10741 0.90721 0.90484 1.24774 0.99327 0.99948 0.96584 1.69812 1.33081 1.40357 1.13785 0.86005 0.78881 0.80734 0.79919 1.20572 1.21788 1.21781 1.21644 0.92632 0.91644 0.94074 1.21236 1.00430 0.89131 1.03983 1.23142 1.00044 0.97592 1.00631 1.22984 1.03410 1.02120 0.91672 0.90128 0.92938 0.89549 0.85517 0.92916 0.88099 0.92087 0.92109 0.91124 0.87721 0.96041 0.93810 0.95033 0.95589 0.86723 0.87830 0.88441 0.88267 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 8.22 36.00 0.30 -1.13 16 2 C -0.01 -0.15 5.81 -101.17 -0.59 -0.73 16 3 C -0.22 -2.94 8.79 -37.80 -0.33 -3.27 16 4 C 0.54 9.13 7.59 -12.67 -0.10 9.03 16 5 O -0.55 -10.40 12.47 5.27 0.07 -10.33 16 6 N -0.59 -10.29 2.82 -173.22 -0.49 -10.78 16 7 C 0.07 1.14 8.21 59.85 0.49 1.63 16 8 C 0.13 2.41 3.58 -66.10 -0.24 2.18 16 9 H 0.10 1.90 6.99 -51.93 -0.36 1.53 16 10 C -0.15 -3.02 6.53 -24.59 -0.16 -3.18 16 11 C 0.14 3.39 5.00 -2.53 -0.01 3.38 16 12 N -0.60 -15.10 2.97 -170.07 -0.51 -15.61 16 13 C -0.22 -6.06 10.27 -15.06 -0.15 -6.21 16 14 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 15 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 16 N -0.92 -26.21 10.09 55.49 0.56 -25.65 16 17 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 C 0.13 2.73 6.24 -3.06 -0.02 2.71 16 22 C -0.13 -1.19 6.00 -91.77 -0.55 -1.74 16 23 C -0.18 -1.34 9.86 -26.69 -0.26 -1.60 16 24 C -0.16 -1.31 10.24 -26.69 -0.27 -1.58 16 25 H 0.08 1.07 7.60 -51.93 -0.39 0.67 16 26 H 0.05 0.50 5.44 -51.93 -0.28 0.22 16 27 H 0.09 1.21 6.81 -51.93 -0.35 0.86 16 28 H 0.13 1.48 6.33 -52.49 -0.33 1.15 16 29 H 0.05 0.80 7.99 -51.93 -0.41 0.38 16 30 H 0.10 1.97 5.19 -51.93 -0.27 1.70 16 31 H 0.06 0.82 6.18 -51.93 -0.32 0.50 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.11 2.81 5.87 -51.93 -0.30 2.51 16 35 H 0.02 0.52 5.54 -51.93 -0.29 0.23 16 36 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.03 0.57 8.04 -51.93 -0.42 0.15 16 39 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.10 0.77 5.90 -51.93 -0.31 0.46 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 332.09 15.07 5.00 5.00 Total: -1.00 -30.03 332.09 -8.94 -38.97 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -6.55 Total: 2.52 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -2.00 Total: -0.92 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -0.43 Total: -52.03 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.07 Total: -10.33 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.03 -8.94 -38.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567904960.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.418 kcal (2) G-P(sol) polarization free energy of solvation -30.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds