Wall clock time and date at job start Tue Mar 31 2020 00:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32993 * 119.99651 * 2 1 4 4 C 1.47105 * 120.00167 * 4.46320 * 3 2 1 5 5 O 1.21611 * 119.99964 * 354.11404 * 4 3 2 6 6 N 1.34773 * 120.00167 * 174.10701 * 4 3 2 7 7 C 1.46509 * 120.00082 * 0.02562 * 6 4 3 8 8 C 1.46501 * 120.00215 * 180.02562 * 6 4 3 9 9 H 1.09002 * 110.63798 * 358.31530 * 8 6 4 10 10 C 1.55153 * 110.72248 * 234.97685 * 8 6 4 11 11 C 1.54907 * 101.58479 * 277.13931 * 10 8 6 12 12 N 1.47428 * 104.82989 * 322.99004 * 11 10 8 13 13 C 1.36942 * 125.64556 * 204.16408 * 12 11 10 14 14 H 1.08002 * 119.99567 * 179.97438 * 13 12 11 15 15 C 1.38814 * 120.00250 * 359.95726 * 13 12 11 16 16 N 1.31619 * 119.99635 * 0.02562 * 15 13 12 17 17 Si 1.86790 * 119.99802 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47675 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47172 * 120.00171 * 17 15 13 20 20 H 1.48505 * 109.47083 * 240.00131 * 17 15 13 21 21 C 1.47023 * 108.70286 * 24.12911 * 12 11 10 22 22 C 1.50698 * 120.00370 * 180.02562 * 2 1 3 23 23 C 1.52999 * 117.49670 * 4.22425 * 22 2 1 24 24 C 1.53008 * 117.49632 * 295.56658 * 22 2 1 25 25 H 1.09002 * 109.47502 * 64.40637 * 1 2 3 26 26 H 1.09001 * 109.47033 * 184.40646 * 1 2 3 27 27 H 1.08999 * 109.47556 * 304.40220 * 1 2 3 28 28 H 1.07997 * 120.00452 * 184.46414 * 3 2 1 29 29 H 1.09001 * 109.46522 * 89.99593 * 7 6 4 30 30 H 1.09001 * 109.46973 * 209.99770 * 7 6 4 31 31 H 1.08998 * 109.46867 * 329.99948 * 7 6 4 32 32 H 1.08997 * 111.00431 * 35.21618 * 10 8 6 33 33 H 1.09005 * 111.00398 * 159.06133 * 10 8 6 34 34 H 1.08993 * 110.36909 * 204.15364 * 11 10 8 35 35 H 1.09003 * 110.46071 * 81.87292 * 11 10 8 36 36 H 0.96994 * 119.99499 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.88056 * 239.52135 * 21 12 11 38 38 H 1.09000 * 109.88511 * 118.35880 * 21 12 11 39 39 H 1.08993 * 115.54864 * 149.89891 * 22 2 1 40 40 H 1.09002 * 117.49957 * 0.02562 * 23 22 2 41 41 H 1.09001 * 117.49826 * 145.02436 * 23 22 2 42 42 H 1.08998 * 117.49703 * 214.97910 * 24 22 2 43 43 H 1.09004 * 117.49491 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4397 2.4238 0.0991 5 8 0.2238 2.4291 0.0732 6 7 2.1162 3.5833 0.2188 7 6 3.5809 3.5769 0.2497 8 6 1.3870 4.8500 0.3181 9 1 0.3123 4.6810 0.2496 10 6 1.8612 5.8436 -0.7751 11 6 3.1292 6.4454 -0.1196 12 7 2.7969 6.5570 1.3124 13 6 3.3746 7.4248 2.2005 14 1 3.0596 7.4293 3.2336 15 6 4.3651 8.2982 1.7730 16 7 4.7487 8.2928 0.5139 17 14 5.1535 9.4813 2.9845 18 1 4.5497 9.2900 4.3276 19 1 6.6132 9.2175 3.0554 20 1 4.9241 10.8775 2.5336 21 6 1.7420 5.5830 1.6289 22 6 2.2606 -1.3050 -0.0006 23 6 1.4417 -2.5935 -0.1011 24 6 2.1066 -2.2102 1.2234 25 1 -0.3634 0.4439 -0.9268 26 1 -0.3633 -1.0246 0.0790 27 1 -0.3634 0.5806 0.8479 28 1 3.2494 1.1534 -0.0728 29 1 3.9660 3.6681 -0.7659 30 1 3.9353 4.4153 0.8494 31 1 3.9310 2.6426 0.6885 32 1 2.1097 5.3196 -1.6980 33 1 1.1112 6.6139 -0.9548 34 1 3.3416 7.4294 -0.5374 35 1 3.9824 5.7819 -0.2604 36 1 5.4411 8.9029 0.2153 37 1 0.8633 6.1004 2.0141 38 1 2.1067 4.8681 2.3665 39 1 3.2324 -1.2865 -0.4938 40 1 0.3580 -2.4973 -0.1673 41 1 1.8750 -3.4229 -0.6602 42 1 2.9770 -2.7875 1.5351 43 1 1.4605 -1.8615 2.0291 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567904960.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:38 Heat of formation + Delta-G solvation = 31.581606 kcal Electronic energy + Delta-G solvation = -22089.210052 eV Core-core repulsion = 18943.368375 eV Total energy + Delta-G solvation = -3145.841677 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.32648 -39.48288 -38.51793 -35.97110 -34.28334 -33.79476 -31.14499 -29.72233 -28.71616 -27.53477 -26.29276 -24.94727 -23.20690 -22.15711 -21.98695 -20.13638 -19.15071 -18.86920 -18.45446 -17.11819 -16.87609 -16.56519 -16.37133 -15.74454 -15.48796 -15.02934 -14.72249 -14.11950 -14.03616 -13.92878 -13.61864 -13.56391 -13.35538 -13.28229 -12.94420 -12.85826 -12.79310 -12.47096 -12.39942 -12.13170 -11.98446 -11.88270 -11.77181 -11.70344 -11.42081 -11.29590 -10.71693 -10.47745 -9.98790 -9.49733 -8.87386 -7.76170 -5.20407 0.35293 1.48075 1.48839 1.58907 2.05785 2.25821 2.50249 3.00545 3.34049 3.46725 3.69372 3.86705 3.90834 3.96554 3.96892 4.10845 4.15569 4.21407 4.29840 4.40531 4.62558 4.64338 4.67468 4.69615 4.82032 4.85684 4.88707 4.93664 5.01966 5.02663 5.11303 5.12960 5.16593 5.28709 5.45176 5.49686 5.56377 5.62770 5.71513 5.83284 6.31856 6.52023 7.12109 7.21576 7.77526 8.41829 9.25151 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033135 B = 0.003609 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.821160 B = 7756.392864 C = 8063.802838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.006 3.994 3 C -0.240 4.240 4 C 0.538 3.462 5 O -0.579 6.579 6 N -0.596 5.596 7 C 0.078 3.922 8 C 0.138 3.862 9 H 0.101 0.899 10 C -0.139 4.139 11 C 0.152 3.848 12 N -0.619 5.619 13 C -0.238 4.238 14 H 0.076 0.924 15 C -0.061 4.061 16 N -0.944 5.944 17 Si 0.978 3.022 18 H -0.271 1.271 19 H -0.290 1.290 20 H -0.293 1.293 21 C 0.129 3.871 22 C -0.146 4.146 23 C -0.167 4.167 24 C -0.161 4.161 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.146 0.854 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.016 0.984 36 H 0.247 0.753 37 H 0.031 0.969 38 H 0.022 0.978 39 H 0.128 0.872 40 H 0.104 0.896 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.747 -20.559 -2.581 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.004 3.996 3 C -0.260 4.260 4 C 0.332 3.668 5 O -0.463 6.463 6 N -0.326 5.326 7 C -0.065 4.065 8 C 0.034 3.966 9 H 0.119 0.881 10 C -0.179 4.179 11 C 0.027 3.973 12 N -0.345 5.345 13 C -0.366 4.366 14 H 0.094 0.906 15 C -0.254 4.254 16 N -0.594 5.594 17 Si 0.807 3.193 18 H -0.195 1.195 19 H -0.217 1.217 20 H -0.220 1.220 21 C 0.003 3.997 22 C -0.163 4.163 23 C -0.204 4.204 24 C -0.198 4.198 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.164 0.836 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.034 0.966 36 H 0.057 0.943 37 H 0.048 0.952 38 H 0.040 0.960 39 H 0.146 0.854 40 H 0.122 0.878 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.209 -20.378 -2.562 20.966 hybrid contribution 0.650 1.273 0.574 1.540 sum -3.560 -19.105 -1.988 19.535 Atomic orbital electron populations 1.21057 0.91318 1.02075 1.02876 1.22033 0.96029 0.93282 0.88287 1.22384 1.01114 0.90545 1.11985 1.19051 0.87014 0.84871 0.75855 1.90704 1.14936 1.87534 1.53083 1.47704 1.07696 1.05590 1.71639 1.22035 0.78472 1.03618 1.02348 1.21843 0.96765 0.83003 0.95015 0.88123 1.23183 0.99454 0.97800 0.97417 1.21900 0.92301 1.00036 0.83037 1.44754 1.42421 1.40548 1.06807 1.19417 1.14676 1.11317 0.91239 0.90594 1.25541 1.00018 1.01558 0.98247 1.70041 1.33300 1.40854 1.15167 0.85013 0.77711 0.78265 0.78325 1.19539 1.21737 1.21974 1.21690 0.91558 0.91094 0.95399 1.21304 1.01137 0.88185 1.05720 1.23252 0.99990 0.96863 1.00280 1.23076 1.03990 1.01359 0.91350 0.91415 0.90307 0.91675 0.83607 0.91967 0.91652 0.89151 0.90337 0.90878 0.91175 0.96598 0.94285 0.95155 0.96015 0.85405 0.87810 0.86585 0.86602 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 8.22 71.24 0.59 -2.11 16 2 C 0.01 0.12 5.81 -17.62 -0.10 0.02 16 3 C -0.24 -6.02 8.79 23.43 0.21 -5.82 16 4 C 0.54 17.67 7.59 86.57 0.66 18.33 16 5 O -0.58 -21.67 12.47 -4.07 -0.05 -21.72 16 6 N -0.60 -20.36 2.82 -820.21 -2.32 -22.68 16 7 C 0.08 2.44 8.21 127.77 1.05 3.49 16 8 C 0.14 5.26 3.58 46.18 0.17 5.43 16 9 H 0.10 3.84 6.99 -2.39 -0.02 3.82 16 10 C -0.14 -5.42 6.53 31.98 0.21 -5.21 16 11 C 0.15 7.27 5.00 86.85 0.43 7.70 16 12 N -0.62 -31.58 2.97 -691.98 -2.05 -33.63 16 13 C -0.24 -13.23 10.27 84.03 0.86 -12.36 16 14 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 15 C -0.06 -3.39 5.49 84.86 0.47 -2.92 16 16 N -0.94 -54.81 10.09 21.65 0.22 -54.59 16 17 Si 0.98 45.24 29.55 68.60 2.03 47.27 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 20 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 21 C 0.13 5.61 6.24 86.73 0.54 6.15 16 22 C -0.15 -2.21 6.00 -11.54 -0.07 -2.28 16 23 C -0.17 -1.93 9.86 30.62 0.30 -1.63 16 24 C -0.16 -2.03 10.24 30.62 0.31 -1.72 16 25 H 0.07 1.75 7.60 -2.39 -0.02 1.74 16 26 H 0.08 1.35 5.44 -2.39 -0.01 1.33 16 27 H 0.06 1.81 6.81 -2.39 -0.02 1.79 16 28 H 0.15 3.03 6.33 -2.91 -0.02 3.01 16 29 H 0.06 1.82 7.99 -2.39 -0.02 1.80 16 30 H 0.06 2.57 5.19 -2.39 -0.01 2.55 16 31 H 0.09 2.26 6.18 -2.39 -0.01 2.25 16 32 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.07 2.79 8.14 -2.38 -0.02 2.78 16 34 H 0.07 3.89 5.87 -2.39 -0.01 3.87 16 35 H 0.02 0.79 5.54 -2.39 -0.01 0.77 16 36 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 37 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 38 H 0.02 0.97 8.04 -2.39 -0.02 0.95 16 39 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.10 1.20 5.90 -2.39 -0.01 1.18 16 41 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -65.36 332.09 4.45 -60.91 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 1.00 Total: 17.37 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 5.62 Total: 7.07 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -4.15 Total: -110.90 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.05 Total: -21.72 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -65.36 4.45 -60.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567904960.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.493 kcal (2) G-P(sol) polarization free energy of solvation -65.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds