Wall clock time and date at job start Tue Mar 31 2020 00:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.30997 * 120.00250 * 2 1 4 4 C 1.50699 * 119.99993 * 359.97438 * 3 2 1 5 5 H 1.09002 * 110.29054 * 357.88225 * 4 3 2 6 6 C 1.54375 * 110.32914 * 235.64001 * 4 3 2 7 7 N 1.48563 * 104.60039 * 217.24965 * 6 4 3 8 8 C 1.48569 * 104.21582 * 39.48428 * 7 6 4 9 9 C 1.54270 * 110.32297 * 120.00196 * 4 3 2 10 10 H 1.08997 * 110.32340 * 0.02562 * 9 4 3 11 11 C 1.50700 * 110.32575 * 237.89596 * 9 4 3 12 12 O 1.21283 * 120.00026 * 0.02562 * 11 9 4 13 13 N 1.34777 * 119.99963 * 179.97438 * 11 9 4 14 14 C 1.46494 * 120.00166 * 180.02562 * 13 11 9 15 15 C 1.52998 * 109.47421 * 181.04052 * 14 13 11 16 16 C 1.50704 * 115.54824 * 39.68085 * 15 14 13 17 17 H 1.08000 * 119.99688 * 264.53411 * 16 15 14 18 18 C 1.37871 * 119.99910 * 84.53682 * 16 15 14 19 19 N 1.31518 * 120.00195 * 352.91379 * 18 16 15 20 20 Si 1.86796 * 119.99825 * 172.91736 * 18 16 15 21 21 H 1.48500 * 109.47452 * 59.99860 * 20 18 16 22 22 H 1.48501 * 109.47388 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47100 * 299.99694 * 20 18 16 24 24 C 1.52998 * 117.49705 * 253.97552 * 15 14 13 25 25 C 1.53001 * 117.50021 * 185.35130 * 15 14 13 26 26 H 1.09006 * 109.46502 * 60.00716 * 1 2 3 27 27 H 1.08992 * 109.47310 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47398 * 300.00757 * 1 2 3 29 29 H 1.08000 * 119.99994 * 179.97438 * 2 1 3 30 30 H 1.07996 * 120.00510 * 179.97438 * 3 2 1 31 31 H 1.08996 * 110.41018 * 336.03539 * 6 4 3 32 32 H 1.09004 * 110.41022 * 98.47392 * 6 4 3 33 33 H 1.00900 * 110.99765 * 279.93233 * 7 6 4 34 34 H 1.08997 * 110.40740 * 201.73926 * 8 7 6 35 35 H 1.08996 * 110.50806 * 79.34747 * 8 7 6 36 36 H 0.96996 * 119.99507 * 0.02562 * 13 11 9 37 37 H 1.09002 * 109.47212 * 301.04440 * 14 13 11 38 38 H 1.09001 * 109.47288 * 61.03850 * 14 13 11 39 39 H 0.97000 * 119.99783 * 185.03158 * 19 18 16 40 40 H 1.08993 * 117.50189 * 359.97438 * 24 15 14 41 41 H 1.09002 * 117.49500 * 145.02248 * 24 15 14 42 42 H 1.09002 * 117.49725 * 214.97833 * 25 15 14 43 43 H 1.09002 * 117.49603 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1344 0.0000 4 6 1.4086 2.4396 -0.0006 5 1 0.3348 2.2561 -0.0387 6 6 1.8484 3.3122 -1.1956 7 7 1.8461 4.7004 -0.6665 8 6 2.3929 4.5677 0.7086 9 6 1.7667 3.2655 1.2522 10 1 2.4877 2.7271 1.8672 11 6 0.5252 3.5723 2.0494 12 8 -0.5549 3.1749 1.6667 13 7 0.6152 4.2875 3.1883 14 6 -0.5916 4.5852 3.9636 15 6 -0.2178 5.4254 5.1864 16 6 0.8276 6.4853 4.9518 17 1 1.8650 6.2779 5.1692 18 6 0.4597 7.7195 4.4598 19 7 -0.7772 7.9277 4.0642 20 14 1.7180 9.0961 4.3551 21 1 2.8373 8.6776 3.4735 22 1 1.0754 10.3127 3.7963 23 1 2.2415 9.3926 5.7128 24 6 -0.2276 4.7316 6.5500 25 6 -1.3254 5.7366 6.1950 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 2.0470 -0.9353 0.0004 30 1 3.2420 1.1345 0.0004 31 1 2.8495 3.0318 -1.5229 32 1 1.1384 3.2175 -2.0172 33 1 0.9110 5.0791 -0.6488 34 1 2.0928 5.4182 1.3206 35 1 3.4793 4.4846 0.6811 36 1 1.4791 4.6050 3.4945 37 1 -1.2947 5.1402 3.3425 38 1 -1.0527 3.6532 4.2903 39 1 -1.0186 8.7713 3.6508 40 1 -0.5007 3.6768 6.5760 41 1 0.5223 5.0417 7.2777 42 1 -1.2976 6.7077 6.6893 43 1 -2.3204 5.3430 5.9872 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576926366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:03 Heat of formation + Delta-G solvation = -4.668020 kcal Electronic energy + Delta-G solvation = -22400.693860 eV Core-core repulsion = 19253.280282 eV Total energy + Delta-G solvation = -3147.413579 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.04276 -37.75604 -36.53900 -34.98087 -33.26189 -32.06318 -30.05213 -29.07703 -26.42518 -26.12993 -25.22825 -22.34780 -21.55771 -21.17691 -19.60753 -19.04515 -18.41499 -17.06620 -16.09311 -15.88784 -15.58371 -14.90309 -14.84772 -14.55753 -14.05736 -13.81530 -13.52773 -13.19797 -12.94844 -12.78052 -12.35507 -11.92751 -11.79273 -11.75560 -11.64189 -11.55393 -11.27476 -11.05278 -10.97681 -10.86370 -10.58873 -10.37635 -10.27767 -9.71077 -9.41001 -9.06126 -8.91380 -8.56891 -8.51537 -8.37831 -7.96848 -6.14810 -4.24867 2.20771 3.20293 3.22279 3.29378 3.30654 3.90139 4.29225 4.35177 4.76094 4.84348 5.11181 5.13067 5.18710 5.19770 5.29384 5.35997 5.51354 5.54989 5.71707 5.75052 5.78659 5.83837 5.97280 6.00772 6.10538 6.13119 6.26901 6.37449 6.45204 6.51693 6.65452 6.67904 6.75882 6.86028 6.88178 7.04837 7.24517 7.34810 7.38014 7.45899 7.73453 8.27517 8.37574 8.77022 8.92847 9.43031 10.92694 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018885 B = 0.005364 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.327544 B = 5219.187150 C = 6184.292242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.158 4.158 3 C -0.151 4.151 4 C -0.094 4.094 5 H 0.110 0.890 6 C 0.050 3.950 7 N -0.667 5.667 8 C 0.048 3.952 9 C -0.138 4.138 10 H 0.100 0.900 11 C 0.508 3.492 12 O -0.561 6.561 13 N -0.691 5.691 14 C 0.165 3.835 15 C 0.028 3.972 16 C -0.506 4.506 17 H 0.060 0.940 18 C 0.079 3.921 19 N -0.869 5.869 20 Si 0.888 3.112 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.211 4.211 25 C -0.152 4.152 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.342 0.658 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.405 0.595 37 H 0.067 0.933 38 H 0.035 0.965 39 H 0.263 0.737 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.516 -10.281 -6.741 13.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.176 4.176 3 C -0.169 4.169 4 C -0.114 4.114 5 H 0.128 0.872 6 C -0.080 4.080 7 N -0.292 5.292 8 C -0.083 4.083 9 C -0.161 4.161 10 H 0.118 0.882 11 C 0.293 3.707 12 O -0.442 6.442 13 N -0.340 5.340 14 C 0.042 3.958 15 C 0.027 3.973 16 C -0.544 4.544 17 H 0.078 0.922 18 C -0.126 4.126 19 N -0.504 5.504 20 Si 0.715 3.285 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.248 4.248 25 C -0.190 4.190 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.158 0.842 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.241 0.759 37 H 0.085 0.915 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.198 -10.075 -7.363 13.518 hybrid contribution 0.334 0.486 0.749 0.953 sum 5.533 -9.589 -6.614 12.896 Atomic orbital electron populations 1.20886 0.93110 1.01590 1.02838 1.22835 0.96511 0.97538 1.00753 1.22703 0.98949 0.93692 1.01574 1.21799 1.02758 0.93192 0.93683 0.87161 1.23038 1.01541 0.87105 0.96282 1.63270 1.27820 1.19519 1.18623 1.23076 1.00160 0.95571 0.89448 1.22670 0.97021 0.98881 0.97508 0.88172 1.20294 0.90197 0.78667 0.81575 1.90595 1.29513 1.54105 1.69941 1.45950 1.12455 1.52454 1.23107 1.20848 0.85742 0.96035 0.93222 1.19035 0.97677 0.95466 0.85081 1.20239 0.92466 0.95720 1.45974 0.92175 1.24971 0.94990 0.98088 0.94589 1.69968 1.17270 1.25111 1.38082 0.86730 0.81529 0.81715 0.78478 1.20031 1.21255 1.20174 1.23086 1.03270 0.95657 1.02819 1.22495 0.92481 0.98426 1.05596 0.91768 0.92767 0.90666 0.87631 0.87474 0.90356 0.90959 0.84236 0.89430 0.89577 0.75917 0.91510 0.94712 0.92711 0.91656 0.90378 0.89910 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 8.65 36.00 0.31 -1.20 16 2 C -0.16 -1.77 10.26 -36.03 -0.37 -2.14 16 3 C -0.15 -1.74 8.47 -36.03 -0.31 -2.05 16 4 C -0.09 -1.25 2.76 -90.39 -0.25 -1.50 16 5 H 0.11 1.71 4.18 -51.93 -0.22 1.49 16 6 C 0.05 0.62 7.00 -2.18 -0.02 0.60 16 7 N -0.67 -9.30 7.63 -109.65 -0.84 -10.14 16 8 C 0.05 0.67 7.00 -2.18 -0.02 0.65 16 9 C -0.14 -1.98 3.08 -90.38 -0.28 -2.26 16 10 H 0.10 1.30 7.70 -51.93 -0.40 0.90 16 11 C 0.51 9.38 7.07 -10.99 -0.08 9.30 16 12 O -0.56 -11.99 15.25 5.56 0.08 -11.91 16 13 N -0.69 -13.50 5.10 -60.30 -0.31 -13.81 16 14 C 0.17 3.67 5.75 -4.05 -0.02 3.64 16 15 C 0.03 0.65 1.71 -155.66 -0.27 0.38 16 16 C -0.51 -12.43 7.43 -34.44 -0.26 -12.68 16 17 H 0.06 1.44 7.82 -52.49 -0.41 1.03 16 18 C 0.08 2.01 5.39 -17.82 -0.10 1.91 16 19 N -0.87 -23.38 12.97 55.43 0.72 -22.67 16 20 Si 0.89 19.84 29.55 -169.99 -5.02 14.82 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 C -0.21 -4.36 9.88 -26.73 -0.26 -4.63 16 25 C -0.15 -3.42 9.51 -26.73 -0.25 -3.67 16 26 H 0.06 0.75 7.72 -51.93 -0.40 0.35 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 1.08 7.81 -51.93 -0.41 0.67 16 29 H 0.11 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.08 0.88 7.85 -51.93 -0.41 0.47 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.34 5.08 8.92 -39.29 -0.35 4.73 16 34 H 0.09 1.39 7.67 -51.93 -0.40 0.99 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.40 7.55 7.45 -40.82 -0.30 7.24 16 37 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 38 H 0.03 0.76 7.95 -51.93 -0.41 0.34 16 39 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 40 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 41 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 43 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 350.39 15.07 5.28 5.28 Total: -1.00 -27.34 350.39 -9.31 -36.65 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -7.07 Total: 15.41 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -2.16 Total: -13.64 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -0.42 Total: -46.61 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.08 Total: -11.91 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.34 -9.31 -36.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576926366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.982 kcal (2) G-P(sol) polarization free energy of solvation -27.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds