Wall clock time and date at job start Tue Mar 31 2020 00:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.30997 * 120.00250 * 2 1 4 4 C 1.50699 * 119.99993 * 359.97438 * 3 2 1 5 5 H 1.09002 * 110.29054 * 357.88225 * 4 3 2 6 6 C 1.54375 * 110.32914 * 235.64001 * 4 3 2 7 7 N 1.48563 * 104.60039 * 217.24965 * 6 4 3 8 8 C 1.48569 * 104.21582 * 39.48428 * 7 6 4 9 9 C 1.54270 * 110.32297 * 120.00196 * 4 3 2 10 10 H 1.08997 * 110.32340 * 0.02562 * 9 4 3 11 11 C 1.50700 * 110.32575 * 237.89596 * 9 4 3 12 12 O 1.21283 * 120.00026 * 0.02562 * 11 9 4 13 13 N 1.34777 * 119.99963 * 179.97438 * 11 9 4 14 14 C 1.46494 * 120.00166 * 180.02562 * 13 11 9 15 15 C 1.52998 * 109.47421 * 181.04052 * 14 13 11 16 16 C 1.50704 * 115.54824 * 39.68085 * 15 14 13 17 17 H 1.08000 * 119.99688 * 264.53411 * 16 15 14 18 18 C 1.37871 * 119.99910 * 84.53682 * 16 15 14 19 19 N 1.31518 * 120.00195 * 352.91379 * 18 16 15 20 20 Si 1.86796 * 119.99825 * 172.91736 * 18 16 15 21 21 H 1.48500 * 109.47452 * 59.99860 * 20 18 16 22 22 H 1.48501 * 109.47388 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47100 * 299.99694 * 20 18 16 24 24 C 1.52998 * 117.49705 * 253.97552 * 15 14 13 25 25 C 1.53001 * 117.50021 * 185.35130 * 15 14 13 26 26 H 1.09006 * 109.46502 * 60.00716 * 1 2 3 27 27 H 1.08992 * 109.47310 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47398 * 300.00757 * 1 2 3 29 29 H 1.08000 * 119.99994 * 179.97438 * 2 1 3 30 30 H 1.07996 * 120.00510 * 179.97438 * 3 2 1 31 31 H 1.08996 * 110.41018 * 336.03539 * 6 4 3 32 32 H 1.09004 * 110.41022 * 98.47392 * 6 4 3 33 33 H 1.00900 * 110.99765 * 279.93233 * 7 6 4 34 34 H 1.08997 * 110.40740 * 201.73926 * 8 7 6 35 35 H 1.08996 * 110.50806 * 79.34747 * 8 7 6 36 36 H 0.96996 * 119.99507 * 0.02562 * 13 11 9 37 37 H 1.09002 * 109.47212 * 301.04440 * 14 13 11 38 38 H 1.09001 * 109.47288 * 61.03850 * 14 13 11 39 39 H 0.97000 * 119.99783 * 185.03158 * 19 18 16 40 40 H 1.08993 * 117.50189 * 359.97438 * 24 15 14 41 41 H 1.09002 * 117.49500 * 145.02248 * 24 15 14 42 42 H 1.09002 * 117.49725 * 214.97833 * 25 15 14 43 43 H 1.09002 * 117.49603 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1344 0.0000 4 6 1.4086 2.4396 -0.0006 5 1 0.3348 2.2561 -0.0387 6 6 1.8484 3.3122 -1.1956 7 7 1.8461 4.7004 -0.6665 8 6 2.3929 4.5677 0.7086 9 6 1.7667 3.2655 1.2522 10 1 2.4877 2.7271 1.8672 11 6 0.5252 3.5723 2.0494 12 8 -0.5549 3.1749 1.6667 13 7 0.6152 4.2875 3.1883 14 6 -0.5916 4.5852 3.9636 15 6 -0.2178 5.4254 5.1864 16 6 0.8276 6.4853 4.9518 17 1 1.8650 6.2779 5.1692 18 6 0.4597 7.7195 4.4598 19 7 -0.7772 7.9277 4.0642 20 14 1.7180 9.0961 4.3551 21 1 2.8373 8.6776 3.4735 22 1 1.0754 10.3127 3.7963 23 1 2.2415 9.3926 5.7128 24 6 -0.2276 4.7316 6.5500 25 6 -1.3254 5.7366 6.1950 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 2.0470 -0.9353 0.0004 30 1 3.2420 1.1345 0.0004 31 1 2.8495 3.0318 -1.5229 32 1 1.1384 3.2175 -2.0172 33 1 0.9110 5.0791 -0.6488 34 1 2.0928 5.4182 1.3206 35 1 3.4793 4.4846 0.6811 36 1 1.4791 4.6050 3.4945 37 1 -1.2947 5.1402 3.3425 38 1 -1.0527 3.6532 4.2903 39 1 -1.0186 8.7713 3.6508 40 1 -0.5007 3.6768 6.5760 41 1 0.5223 5.0417 7.2777 42 1 -1.2976 6.7077 6.6893 43 1 -2.3204 5.3430 5.9872 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576926366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:02 Heat of formation + Delta-G solvation = -21.812847 kcal Electronic energy + Delta-G solvation = -22401.437316 eV Core-core repulsion = 19253.280282 eV Total energy + Delta-G solvation = -3148.157034 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.36939 -39.18351 -38.20150 -35.94255 -34.88745 -34.00394 -31.23957 -30.14333 -27.93250 -27.35859 -27.01450 -23.58393 -22.96121 -22.59302 -21.36689 -20.53086 -19.38771 -18.49145 -17.77851 -17.24176 -16.77100 -16.58338 -16.28850 -16.01111 -15.38504 -15.34122 -14.70082 -14.59201 -14.36011 -14.14735 -13.79036 -13.51706 -13.35530 -12.93983 -12.87805 -12.77461 -12.73979 -12.46930 -12.41839 -12.34690 -12.03909 -11.94613 -11.49049 -11.36400 -10.95922 -10.77281 -10.46172 -10.13589 -10.04063 -9.71358 -9.54334 -8.09782 -6.23842 1.32282 1.44939 1.47730 1.52945 1.72432 2.39616 2.46397 3.19157 3.26056 3.44941 3.62276 3.81981 4.04639 4.12157 4.23364 4.29696 4.33554 4.44986 4.50004 4.54074 4.61915 4.66624 4.72096 4.72888 4.79054 4.91047 4.95108 4.98466 5.00904 5.07466 5.16698 5.24343 5.36609 5.47289 5.59987 5.64999 5.73845 5.77313 5.79539 5.99838 6.21450 6.36786 6.80212 6.86505 7.40881 7.46879 8.97383 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018885 B = 0.005364 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.327544 B = 5219.187150 C = 6184.292242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.159 4.159 3 C -0.153 4.153 4 C -0.092 4.092 5 H 0.084 0.916 6 C 0.054 3.946 7 N -0.673 5.673 8 C 0.052 3.948 9 C -0.128 4.128 10 H 0.123 0.877 11 C 0.504 3.496 12 O -0.594 6.594 13 N -0.691 5.691 14 C 0.180 3.820 15 C 0.005 3.995 16 C -0.505 4.505 17 H 0.067 0.933 18 C 0.034 3.966 19 N -0.904 5.904 20 Si 0.945 3.055 21 H -0.263 1.263 22 H -0.296 1.296 23 H -0.273 1.273 24 C -0.181 4.181 25 C -0.163 4.163 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.332 0.668 34 H 0.065 0.935 35 H 0.113 0.887 36 H 0.410 0.590 37 H 0.026 0.974 38 H 0.037 0.963 39 H 0.258 0.742 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.126 -11.630 -7.031 15.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.177 4.177 3 C -0.172 4.172 4 C -0.112 4.112 5 H 0.102 0.898 6 C -0.075 4.075 7 N -0.297 5.297 8 C -0.079 4.079 9 C -0.151 4.151 10 H 0.141 0.859 11 C 0.292 3.708 12 O -0.476 6.476 13 N -0.340 5.340 14 C 0.055 3.945 15 C 0.005 3.995 16 C -0.542 4.542 17 H 0.085 0.915 18 C -0.167 4.167 19 N -0.541 5.541 20 Si 0.771 3.229 21 H -0.188 1.188 22 H -0.222 1.222 23 H -0.199 1.199 24 C -0.218 4.218 25 C -0.201 4.201 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.146 0.854 34 H 0.083 0.917 35 H 0.131 0.869 36 H 0.247 0.753 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.845 -11.438 -7.649 15.839 hybrid contribution -0.541 0.861 0.842 1.320 sum 7.304 -10.577 -6.806 14.545 Atomic orbital electron populations 1.20844 0.94223 1.02085 1.01173 1.23027 0.95862 0.98627 1.00155 1.22779 0.99954 0.92521 1.01905 1.21721 1.01597 0.94424 0.93450 0.89781 1.23108 1.02773 0.85772 0.95873 1.63337 1.27133 1.20628 1.18629 1.23102 1.01495 0.94229 0.89027 1.22683 0.95065 0.99720 0.97615 0.85947 1.21066 0.91280 0.77430 0.81071 1.90585 1.31347 1.55148 1.70523 1.45880 1.11725 1.52842 1.23507 1.20483 0.86141 0.95279 0.92558 1.19133 0.97904 0.96259 0.86226 1.20514 0.93034 0.95935 1.44750 0.91524 1.25629 0.96323 1.00184 0.94598 1.70105 1.19084 1.25299 1.39613 0.85821 0.79711 0.78870 0.78515 1.18792 1.22191 1.19854 1.23081 1.01725 0.96273 1.00745 1.22424 0.93221 0.98390 1.06057 0.92158 0.91156 0.93732 0.85230 0.85071 0.88337 0.90520 0.85382 0.91685 0.86903 0.75264 0.95579 0.94526 0.93288 0.89489 0.89591 0.91831 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.65 71.23 0.62 -2.29 16 2 C -0.16 -3.16 10.26 25.65 0.26 -2.90 16 3 C -0.15 -3.09 8.47 25.65 0.22 -2.87 16 4 C -0.09 -2.30 2.76 -10.64 -0.03 -2.33 16 5 H 0.08 2.61 4.18 -2.39 -0.01 2.60 16 6 C 0.05 1.22 7.00 86.45 0.61 1.82 16 7 N -0.67 -17.93 7.63 -500.84 -3.82 -21.75 16 8 C 0.05 1.36 7.00 86.45 0.61 1.96 16 9 C -0.13 -3.48 3.08 -10.64 -0.03 -3.51 16 10 H 0.12 2.82 7.70 -2.39 -0.02 2.80 16 11 C 0.50 18.71 7.07 87.66 0.62 19.33 16 12 O -0.59 -26.15 15.25 -3.04 -0.05 -26.19 16 13 N -0.69 -27.04 5.10 -463.07 -2.36 -29.40 16 14 C 0.18 8.15 5.75 86.38 0.50 8.65 16 15 C 0.01 0.25 1.71 -52.93 -0.09 0.16 16 16 C -0.50 -24.56 7.43 25.60 0.19 -24.37 16 17 H 0.07 3.10 7.82 -2.91 -0.02 3.08 16 18 C 0.03 1.75 5.39 84.65 0.46 2.20 16 19 N -0.90 -49.88 12.97 21.45 0.28 -49.61 16 20 Si 0.94 40.62 29.55 68.60 2.03 42.65 16 21 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 22 H -0.30 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 C -0.18 -7.21 9.88 30.60 0.30 -6.90 16 25 C -0.16 -7.37 9.51 30.60 0.29 -7.08 16 26 H 0.06 1.40 7.72 -2.38 -0.02 1.38 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.04 1.30 7.81 -2.39 -0.02 1.28 16 29 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.13 2.06 8.06 -2.91 -0.02 2.03 16 31 H 0.10 1.86 7.85 -2.39 -0.02 1.84 16 32 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.33 9.89 8.92 -89.69 -0.80 9.09 16 34 H 0.06 2.01 7.67 -2.39 -0.02 1.99 16 35 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.41 15.03 7.45 -92.71 -0.69 14.34 16 37 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.04 1.61 7.95 -2.39 -0.02 1.59 16 39 H 0.26 13.91 8.32 -92.71 -0.77 13.14 16 40 H 0.09 3.09 8.08 -2.39 -0.02 3.07 16 41 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 42 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 43 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -59.57 350.39 0.10 -59.47 By element: Atomic # 1 Polarization: 43.44 SS G_CDS: -0.49 Total: 42.96 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 4.51 Total: -18.13 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -5.90 Total: -100.76 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.05 Total: -26.19 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -59.57 0.10 -59.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576926366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.657 kcal (2) G-P(sol) polarization free energy of solvation -59.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds