Wall clock time and date at job start Tue Mar 31 2020 00:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.31008 * 120.00195 * 2 1 4 4 C 1.50699 * 120.00195 * 179.97438 * 3 2 1 5 5 H 1.09007 * 110.90338 * 356.13663 * 4 3 2 6 6 C 1.54902 * 110.99086 * 232.27253 * 4 3 2 7 7 N 1.47848 * 104.79681 * 204.83837 * 6 4 3 8 8 C 1.47445 * 108.56252 * 24.09011 * 7 6 4 9 9 C 1.54312 * 107.23602 * 359.01679 * 8 7 6 10 10 H 1.09001 * 110.71145 * 96.09517 * 9 8 7 11 11 C 1.50703 * 110.70330 * 219.15740 * 9 8 7 12 12 O 1.21281 * 119.99861 * 116.19309 * 11 9 8 13 13 N 1.34777 * 119.99836 * 296.18798 * 11 9 8 14 14 C 1.46499 * 119.99958 * 180.02562 * 13 11 9 15 15 C 1.53001 * 109.47363 * 181.16831 * 14 13 11 16 16 C 1.50702 * 115.55120 * 39.67664 * 15 14 13 17 17 H 1.07998 * 119.99979 * 264.53736 * 16 15 14 18 18 C 1.37872 * 119.99533 * 84.53331 * 16 15 14 19 19 N 1.31515 * 120.00573 * 352.92590 * 18 16 15 20 20 Si 1.86808 * 119.99874 * 172.93092 * 18 16 15 21 21 H 1.48497 * 109.47062 * 89.99679 * 20 18 16 22 22 H 1.48501 * 109.47175 * 210.00049 * 20 18 16 23 23 H 1.48500 * 109.46741 * 329.99799 * 20 18 16 24 24 C 1.53001 * 117.49536 * 253.97201 * 15 14 13 25 25 C 1.52992 * 117.49943 * 185.35147 * 15 14 13 26 26 H 1.08997 * 109.46911 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46994 * 300.00141 * 1 2 3 28 28 H 1.09000 * 109.46758 * 59.99458 * 1 2 3 29 29 H 1.08005 * 120.00226 * 180.02562 * 2 1 3 30 30 H 1.07997 * 119.99574 * 0.02562 * 3 2 1 31 31 H 1.08995 * 110.37581 * 86.00867 * 6 4 3 32 32 H 1.09003 * 110.46932 * 323.71172 * 6 4 3 33 33 H 1.00898 * 111.00045 * 146.36068 * 7 6 4 34 34 H 1.09001 * 109.89168 * 239.60186 * 8 7 6 35 35 H 1.09006 * 110.01862 * 118.49801 * 8 7 6 36 36 H 0.97000 * 119.99877 * 0.02562 * 13 11 9 37 37 H 1.09006 * 109.46921 * 301.16776 * 14 13 11 38 38 H 1.09000 * 109.47418 * 61.16532 * 14 13 11 39 39 H 0.96998 * 120.00276 * 185.02979 * 19 18 16 40 40 H 1.09000 * 117.50160 * 359.97438 * 24 15 14 41 41 H 1.09000 * 117.49923 * 145.01428 * 24 15 14 42 42 H 1.09000 * 117.50320 * 214.97455 * 25 15 14 43 43 H 1.09002 * 117.50079 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1621 1.1345 0.0000 4 6 3.6691 1.1345 0.0006 5 1 4.0580 0.1185 0.0696 6 6 4.2235 2.0197 1.1445 7 7 5.5701 2.4259 0.6888 8 6 5.6085 2.3553 -0.7835 9 6 4.2253 1.8585 -1.2537 10 1 3.5871 2.6983 -1.5286 11 6 4.3675 0.8997 -2.4076 12 8 4.0169 -0.2547 -2.2836 13 7 4.8842 1.3251 -3.5775 14 6 5.0219 0.3932 -4.6994 15 6 5.6569 1.1169 -5.8886 16 6 6.7646 2.0800 -5.5473 17 1 6.5481 3.1311 -5.4263 18 6 8.0544 1.6191 -5.3894 19 7 8.2967 0.3265 -5.3983 20 14 9.4580 2.8309 -5.1627 21 1 9.6442 3.1075 -3.7156 22 1 10.7066 2.2522 -5.7207 23 1 9.1389 4.0961 -5.8715 24 6 4.7473 1.4741 -7.0658 25 6 5.7716 0.3462 -7.2052 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 2.0471 -0.9353 -0.0004 30 1 1.6221 2.0698 0.0004 31 1 4.2927 1.4462 2.0687 32 1 3.5915 2.8960 1.2889 33 1 5.7965 3.3544 1.0123 34 1 6.3816 1.6555 -1.1011 35 1 5.8090 3.3427 -1.1994 36 1 5.1648 2.2483 -3.6766 37 1 5.6556 -0.4423 -4.4020 38 1 4.0384 0.0197 -4.9845 39 1 9.1912 -0.0006 -5.2148 40 1 3.6966 1.1932 -6.9933 41 1 4.9498 2.4061 -7.5936 42 1 6.6480 0.5360 -7.8249 43 1 5.3950 -0.6765 -7.2243 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576926367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:06 Heat of formation + Delta-G solvation = -6.397516 kcal Electronic energy + Delta-G solvation = -22127.119628 eV Core-core repulsion = 18979.631053 eV Total energy + Delta-G solvation = -3147.488575 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.80048 -37.70991 -36.51470 -34.85918 -33.17814 -32.03759 -30.60841 -29.51160 -26.24222 -25.90022 -25.17457 -22.01546 -21.18435 -20.93737 -19.60745 -19.57337 -19.00758 -16.85746 -16.51390 -16.05642 -15.08644 -14.82949 -14.44431 -14.28671 -13.88789 -13.69241 -13.39115 -13.28504 -13.17528 -12.85125 -12.66402 -12.29895 -12.05671 -11.74113 -11.64029 -11.47252 -11.26629 -11.04188 -10.95646 -10.83476 -10.69992 -10.55479 -10.25425 -9.66913 -9.20805 -8.94965 -8.82319 -8.53962 -8.42717 -8.33197 -7.92038 -6.12229 -4.22005 2.29697 3.21797 3.29421 3.31094 3.32063 3.93742 4.23818 4.31120 4.67872 4.81277 5.01596 5.15213 5.20073 5.24928 5.28204 5.32894 5.43218 5.48428 5.59898 5.64901 5.66646 5.90342 5.91875 5.98455 6.04958 6.17373 6.30069 6.35817 6.48382 6.55757 6.70515 6.75721 6.82544 6.91791 6.98519 7.07923 7.29627 7.34147 7.38374 7.50011 7.75947 8.30372 8.44273 8.79696 9.00804 9.45623 10.95378 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017699 B = 0.005230 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.646680 B = 5352.179271 C = 6516.665320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.144 4.144 3 C -0.156 4.156 4 C -0.045 4.045 5 H 0.099 0.901 6 C 0.053 3.947 7 N -0.682 5.682 8 C 0.056 3.944 9 C -0.123 4.123 10 H 0.096 0.904 11 C 0.514 3.486 12 O -0.556 6.556 13 N -0.693 5.693 14 C 0.165 3.835 15 C 0.028 3.972 16 C -0.505 4.505 17 H 0.060 0.940 18 C 0.079 3.921 19 N -0.869 5.869 20 Si 0.887 3.113 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.211 4.211 25 C -0.152 4.152 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.338 0.662 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.403 0.597 37 H 0.067 0.933 38 H 0.034 0.966 39 H 0.262 0.738 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.818 4.625 10.028 14.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 C -0.174 4.174 4 C -0.064 4.064 5 H 0.117 0.883 6 C -0.076 4.076 7 N -0.311 5.311 8 C -0.073 4.073 9 C -0.146 4.146 10 H 0.114 0.886 11 C 0.299 3.701 12 O -0.435 6.435 13 N -0.342 5.342 14 C 0.042 3.958 15 C 0.028 3.972 16 C -0.543 4.543 17 H 0.078 0.922 18 C -0.126 4.126 19 N -0.504 5.504 20 Si 0.714 3.286 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.248 4.248 25 C -0.190 4.190 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.129 0.871 30 H 0.122 0.878 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.154 0.846 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.239 0.761 37 H 0.085 0.915 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.562 3.028 10.140 14.263 hybrid contribution 0.535 1.829 -0.363 1.940 sum -9.026 4.857 9.778 14.166 Atomic orbital electron populations 1.20844 0.93509 1.02161 1.01561 1.22880 0.95674 0.98543 0.99109 1.22493 0.94343 0.97860 1.02704 1.21219 0.92477 1.00710 0.92016 0.88293 1.22867 0.88475 0.97948 0.98272 1.61852 1.27861 1.31793 1.09627 1.22591 0.95887 1.01398 0.87433 1.22566 0.98370 0.98755 0.94895 0.88635 1.20076 0.78049 0.88435 0.83574 1.90627 1.50914 1.18943 1.82999 1.45957 1.61285 1.15142 1.11837 1.20840 0.97130 0.91786 0.86084 1.19041 0.95140 0.97649 0.85407 1.20260 0.90686 0.92871 1.50466 0.92196 1.24970 0.98469 0.94947 0.94255 1.69974 1.21653 1.12280 1.46472 0.86682 0.82066 0.81449 0.78406 1.20492 1.21135 1.19801 1.23082 0.94374 0.99744 1.07649 1.22489 0.99261 0.93674 1.03582 0.92197 0.91996 0.91894 0.87052 0.87836 0.90216 0.93837 0.84597 0.89595 0.92023 0.76092 0.91503 0.94730 0.92780 0.91663 0.90420 0.89934 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 10.17 36.01 0.37 -0.89 16 2 C -0.14 -1.83 9.88 -36.03 -0.36 -2.18 16 3 C -0.16 -1.96 8.49 -36.03 -0.31 -2.26 16 4 C -0.04 -0.62 2.42 -89.64 -0.22 -0.84 16 5 H 0.10 1.64 7.19 -51.92 -0.37 1.26 16 6 C 0.05 0.62 7.03 -2.30 -0.02 0.60 16 7 N -0.68 -8.64 7.39 -110.79 -0.82 -9.46 16 8 C 0.06 0.81 7.15 -2.84 -0.02 0.79 16 9 C -0.12 -1.83 2.78 -89.95 -0.25 -2.08 16 10 H 0.10 1.24 8.03 -51.93 -0.42 0.83 16 11 C 0.51 9.89 7.01 -10.98 -0.08 9.81 16 12 O -0.56 -12.43 15.75 5.56 0.09 -12.34 16 13 N -0.69 -13.91 5.31 -60.29 -0.32 -14.23 16 14 C 0.17 3.75 5.75 -4.04 -0.02 3.72 16 15 C 0.03 0.66 1.70 -155.66 -0.27 0.39 16 16 C -0.51 -12.55 7.44 -34.44 -0.26 -12.80 16 17 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 18 C 0.08 2.03 5.39 -17.82 -0.10 1.93 16 19 N -0.87 -23.69 12.97 55.43 0.72 -22.97 16 20 Si 0.89 19.96 29.55 -169.99 -5.02 14.94 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 C -0.21 -4.41 9.88 -26.73 -0.26 -4.67 16 25 C -0.15 -3.46 9.51 -26.74 -0.25 -3.71 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.11 1.55 7.88 -52.48 -0.41 1.14 16 30 H 0.10 1.14 8.05 -52.49 -0.42 0.72 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.04 0.43 8.03 -51.93 -0.42 0.01 16 33 H 0.34 3.48 8.91 -39.29 -0.35 3.13 16 34 H 0.09 1.49 7.82 -51.93 -0.41 1.08 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.40 7.66 7.46 -40.82 -0.30 7.35 16 37 H 0.07 1.73 8.14 -51.93 -0.42 1.30 16 38 H 0.03 0.77 7.95 -51.93 -0.41 0.35 16 39 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 40 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 41 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 42 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 43 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 355.69 15.07 5.36 5.36 Total: -1.00 -28.58 355.69 -9.32 -37.90 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -7.29 Total: 12.99 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -2.04 Total: -12.20 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.42 Total: -46.65 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.09 Total: -12.34 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.58 -9.32 -37.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576926367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.504 kcal (2) G-P(sol) polarization free energy of solvation -28.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds