Wall clock time and date at job start Tue Mar 31 2020 00:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.31008 * 120.00195 * 2 1 4 4 C 1.50699 * 120.00195 * 179.97438 * 3 2 1 5 5 H 1.09007 * 110.90338 * 356.13663 * 4 3 2 6 6 C 1.54902 * 110.99086 * 232.27253 * 4 3 2 7 7 N 1.47848 * 104.79681 * 204.83837 * 6 4 3 8 8 C 1.47445 * 108.56252 * 24.09011 * 7 6 4 9 9 C 1.54312 * 107.23602 * 359.01679 * 8 7 6 10 10 H 1.09001 * 110.71145 * 96.09517 * 9 8 7 11 11 C 1.50703 * 110.70330 * 219.15740 * 9 8 7 12 12 O 1.21281 * 119.99861 * 116.19309 * 11 9 8 13 13 N 1.34777 * 119.99836 * 296.18798 * 11 9 8 14 14 C 1.46499 * 119.99958 * 180.02562 * 13 11 9 15 15 C 1.53001 * 109.47363 * 181.16831 * 14 13 11 16 16 C 1.50702 * 115.55120 * 39.67664 * 15 14 13 17 17 H 1.07998 * 119.99979 * 264.53736 * 16 15 14 18 18 C 1.37872 * 119.99533 * 84.53331 * 16 15 14 19 19 N 1.31515 * 120.00573 * 352.92590 * 18 16 15 20 20 Si 1.86808 * 119.99874 * 172.93092 * 18 16 15 21 21 H 1.48497 * 109.47062 * 89.99679 * 20 18 16 22 22 H 1.48501 * 109.47175 * 210.00049 * 20 18 16 23 23 H 1.48500 * 109.46741 * 329.99799 * 20 18 16 24 24 C 1.53001 * 117.49536 * 253.97201 * 15 14 13 25 25 C 1.52992 * 117.49943 * 185.35147 * 15 14 13 26 26 H 1.08997 * 109.46911 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46994 * 300.00141 * 1 2 3 28 28 H 1.09000 * 109.46758 * 59.99458 * 1 2 3 29 29 H 1.08005 * 120.00226 * 180.02562 * 2 1 3 30 30 H 1.07997 * 119.99574 * 0.02562 * 3 2 1 31 31 H 1.08995 * 110.37581 * 86.00867 * 6 4 3 32 32 H 1.09003 * 110.46932 * 323.71172 * 6 4 3 33 33 H 1.00898 * 111.00045 * 146.36068 * 7 6 4 34 34 H 1.09001 * 109.89168 * 239.60186 * 8 7 6 35 35 H 1.09006 * 110.01862 * 118.49801 * 8 7 6 36 36 H 0.97000 * 119.99877 * 0.02562 * 13 11 9 37 37 H 1.09006 * 109.46921 * 301.16776 * 14 13 11 38 38 H 1.09000 * 109.47418 * 61.16532 * 14 13 11 39 39 H 0.96998 * 120.00276 * 185.02979 * 19 18 16 40 40 H 1.09000 * 117.50160 * 359.97438 * 24 15 14 41 41 H 1.09000 * 117.49923 * 145.01428 * 24 15 14 42 42 H 1.09000 * 117.50320 * 214.97455 * 25 15 14 43 43 H 1.09002 * 117.50079 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1621 1.1345 0.0000 4 6 3.6691 1.1345 0.0006 5 1 4.0580 0.1185 0.0696 6 6 4.2235 2.0197 1.1445 7 7 5.5701 2.4259 0.6888 8 6 5.6085 2.3553 -0.7835 9 6 4.2253 1.8585 -1.2537 10 1 3.5871 2.6983 -1.5286 11 6 4.3675 0.8997 -2.4076 12 8 4.0169 -0.2547 -2.2836 13 7 4.8842 1.3251 -3.5775 14 6 5.0219 0.3932 -4.6994 15 6 5.6569 1.1169 -5.8886 16 6 6.7646 2.0800 -5.5473 17 1 6.5481 3.1311 -5.4263 18 6 8.0544 1.6191 -5.3894 19 7 8.2967 0.3265 -5.3983 20 14 9.4580 2.8309 -5.1627 21 1 9.6442 3.1075 -3.7156 22 1 10.7066 2.2522 -5.7207 23 1 9.1389 4.0961 -5.8715 24 6 4.7473 1.4741 -7.0658 25 6 5.7716 0.3462 -7.2052 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 2.0471 -0.9353 -0.0004 30 1 1.6221 2.0698 0.0004 31 1 4.2927 1.4462 2.0687 32 1 3.5915 2.8960 1.2889 33 1 5.7965 3.3544 1.0123 34 1 6.3816 1.6555 -1.1011 35 1 5.8090 3.3427 -1.1994 36 1 5.1648 2.2483 -3.6766 37 1 5.6556 -0.4423 -4.4020 38 1 4.0384 0.0197 -4.9845 39 1 9.1912 -0.0006 -5.2148 40 1 3.6966 1.1932 -6.9933 41 1 4.9498 2.4061 -7.5936 42 1 6.6480 0.5360 -7.8249 43 1 5.3950 -0.6765 -7.2243 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576926367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:05 Heat of formation + Delta-G solvation = -24.876816 kcal Electronic energy + Delta-G solvation = -22127.920951 eV Core-core repulsion = 18979.631053 eV Total energy + Delta-G solvation = -3148.289898 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.18542 -39.13890 -38.20954 -35.83456 -34.85418 -33.99905 -31.70578 -30.63920 -27.93829 -27.14625 -26.78063 -23.32968 -22.92851 -21.99798 -21.36380 -20.61493 -20.54303 -18.40210 -17.81108 -17.55626 -16.73617 -16.59605 -16.08403 -15.72221 -15.19091 -14.79401 -14.76999 -14.48632 -14.21184 -14.12277 -14.02774 -13.65125 -13.54470 -13.49050 -12.94109 -12.85439 -12.81399 -12.59521 -12.33441 -12.23746 -12.02719 -11.91275 -11.74812 -11.48939 -10.91987 -10.71770 -10.45214 -10.11916 -9.80165 -9.69917 -9.40421 -8.09270 -6.23309 1.32012 1.43268 1.47182 1.54685 1.75546 2.40079 2.46828 3.19090 3.23279 3.45764 3.52432 3.71603 3.97130 4.11101 4.23702 4.25127 4.32863 4.38332 4.47434 4.52684 4.57743 4.63756 4.67649 4.73487 4.85441 4.92888 4.98144 4.99204 5.02066 5.07948 5.11606 5.25279 5.27685 5.48190 5.61053 5.72234 5.76543 5.78662 5.81798 6.03911 6.37337 6.50581 6.81711 6.87965 7.43854 7.47416 8.98210 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017699 B = 0.005230 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.646680 B = 5352.179271 C = 6516.665320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.157 4.157 3 C -0.156 4.156 4 C -0.047 4.047 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.692 5.692 8 C 0.062 3.938 9 C -0.115 4.115 10 H 0.127 0.873 11 C 0.510 3.490 12 O -0.593 6.593 13 N -0.691 5.691 14 C 0.179 3.821 15 C 0.005 3.995 16 C -0.503 4.503 17 H 0.068 0.932 18 C 0.032 3.968 19 N -0.906 5.906 20 Si 0.946 3.054 21 H -0.275 1.275 22 H -0.295 1.295 23 H -0.262 1.262 24 C -0.179 4.179 25 C -0.163 4.163 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.131 0.869 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.356 0.644 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.410 0.590 37 H 0.023 0.977 38 H 0.038 0.962 39 H 0.258 0.742 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.250 7.529 10.937 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.175 4.175 3 C -0.174 4.174 4 C -0.066 4.066 5 H 0.079 0.921 6 C -0.067 4.067 7 N -0.323 5.323 8 C -0.068 4.068 9 C -0.137 4.137 10 H 0.145 0.855 11 C 0.296 3.704 12 O -0.474 6.474 13 N -0.340 5.340 14 C 0.055 3.945 15 C 0.004 3.996 16 C -0.541 4.541 17 H 0.086 0.914 18 C -0.170 4.170 19 N -0.543 5.543 20 Si 0.772 3.228 21 H -0.200 1.200 22 H -0.221 1.221 23 H -0.187 1.187 24 C -0.216 4.216 25 C -0.201 4.201 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.149 0.851 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.174 0.826 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.247 0.753 37 H 0.042 0.958 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.082 0.918 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.001 5.975 11.061 16.705 hybrid contribution 0.967 0.857 -0.645 1.444 sum -10.034 6.831 10.416 15.995 Atomic orbital electron populations 1.20840 0.91346 1.02814 1.02600 1.23010 0.97347 0.97739 0.99423 1.22608 0.93419 0.98846 1.02508 1.21179 0.93674 0.99129 0.92656 0.92108 1.22857 0.88124 0.98560 0.97147 1.61727 1.28875 1.33300 1.08393 1.22427 0.94205 1.01415 0.88740 1.22582 0.99525 0.98463 0.93109 0.85534 1.20900 0.76648 0.88711 0.84119 1.90611 1.52311 1.20924 1.83585 1.45887 1.61512 1.14962 1.11676 1.20490 0.96154 0.91092 0.86810 1.19133 0.96244 0.98256 0.85957 1.20549 0.91014 0.93385 1.49131 0.91413 1.25665 1.00815 0.96111 0.94368 1.70117 1.21695 1.14104 1.48348 0.85737 0.78920 0.79716 0.78406 1.20017 1.22098 1.18663 1.23077 0.94851 0.98976 1.04729 1.22420 0.99706 0.94694 1.03330 0.91895 0.89981 0.91590 0.89632 0.85101 0.89810 0.90752 0.82645 0.93547 0.89737 0.75282 0.95834 0.94418 0.93342 0.89439 0.89518 0.91819 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 10.17 71.24 0.72 -1.47 16 2 C -0.16 -3.89 9.88 25.64 0.25 -3.64 16 3 C -0.16 -3.62 8.49 25.64 0.22 -3.41 16 4 C -0.05 -1.26 2.42 -10.16 -0.02 -1.28 16 5 H 0.06 2.10 7.19 -2.38 -0.02 2.08 16 6 C 0.06 1.27 7.03 86.77 0.61 1.88 16 7 N -0.69 -16.02 7.39 -504.43 -3.73 -19.75 16 8 C 0.06 1.69 7.15 86.64 0.62 2.31 16 9 C -0.11 -3.24 2.78 -10.36 -0.03 -3.27 16 10 H 0.13 2.84 8.03 -2.39 -0.02 2.82 16 11 C 0.51 19.75 7.01 87.66 0.61 20.36 16 12 O -0.59 -27.52 15.75 -3.03 -0.05 -27.57 16 13 N -0.69 -27.75 5.31 -463.05 -2.46 -30.20 16 14 C 0.18 8.29 5.75 86.38 0.50 8.79 16 15 C 0.00 0.22 1.70 -52.93 -0.09 0.13 16 16 C -0.50 -24.70 7.44 25.60 0.19 -24.51 16 17 H 0.07 3.16 7.82 -2.91 -0.02 3.14 16 18 C 0.03 1.64 5.39 84.65 0.46 2.10 16 19 N -0.91 -50.75 12.97 21.45 0.28 -50.47 16 20 Si 0.95 40.88 29.55 68.60 2.03 42.91 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 23 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 24 C -0.18 -7.15 9.88 30.59 0.30 -6.85 16 25 C -0.16 -7.46 9.51 30.59 0.29 -7.17 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 2.52 7.88 -2.91 -0.02 2.50 16 30 H 0.13 2.36 8.05 -2.91 -0.02 2.33 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 1.13 8.03 -2.39 -0.02 1.11 16 33 H 0.36 6.18 8.91 -89.70 -0.80 5.38 16 34 H 0.05 1.63 7.82 -2.39 -0.02 1.61 16 35 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.41 15.18 7.46 -92.71 -0.69 14.49 16 37 H 0.02 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.04 1.69 7.95 -2.39 -0.02 1.67 16 39 H 0.26 14.06 8.32 -92.71 -0.77 13.28 16 40 H 0.09 3.11 8.08 -2.39 -0.02 3.09 16 41 H 0.09 3.31 8.14 -2.39 -0.02 3.30 16 42 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 43 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -63.58 355.69 0.21 -63.37 By element: Atomic # 1 Polarization: 38.23 SS G_CDS: -0.50 Total: 37.74 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 4.63 Total: -16.02 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -5.91 Total: -100.43 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.05 Total: -27.57 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -63.58 0.21 -63.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576926367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.493 kcal (2) G-P(sol) polarization free energy of solvation -63.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds