Wall clock time and date at job start Tue Mar 31 2020 01:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47051 * 2 1 4 4 N 1.46501 * 109.47367 * 119.99803 * 2 1 3 5 5 C 1.46503 * 119.99767 * 300.00326 * 4 2 1 6 6 C 1.50700 * 109.47235 * 269.99736 * 5 4 2 7 7 H 1.08003 * 119.99464 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00211 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99869 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00147 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47021 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47153 * 119.99854 * 10 8 6 13 13 H 1.48503 * 109.47214 * 239.99708 * 10 8 6 14 14 C 1.34773 * 120.00118 * 119.99921 * 4 2 1 15 15 O 1.21286 * 119.99927 * 180.02562 * 14 4 2 16 16 C 1.50698 * 119.99983 * 0.02562 * 14 4 2 17 17 C 1.53003 * 109.47247 * 179.97438 * 16 14 4 18 18 C 1.52996 * 109.47487 * 179.97438 * 17 16 14 19 19 N 1.46494 * 109.47444 * 180.02562 * 18 17 16 20 20 C 1.36345 * 125.63345 * 90.00307 * 19 18 17 21 21 C 1.34850 * 108.21864 * 179.97438 * 20 19 18 22 22 C 1.40894 * 107.41649 * 0.02562 * 21 20 19 23 23 C 1.34846 * 107.41755 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.47277 * 299.99707 * 1 2 3 25 25 H 1.08993 * 109.46941 * 60.00341 * 1 2 3 26 26 H 1.09002 * 109.46856 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47047 * 239.99819 * 2 1 3 28 28 H 1.08998 * 109.47345 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46687 * 299.99797 * 3 2 1 30 30 H 1.09004 * 109.47255 * 59.99501 * 3 2 1 31 31 H 1.09005 * 109.46932 * 30.00216 * 5 4 2 32 32 H 1.09006 * 109.47029 * 149.99541 * 5 4 2 33 33 H 0.97003 * 120.00017 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47297 * 59.99935 * 16 14 4 35 35 H 1.08993 * 109.47290 * 299.99929 * 16 14 4 36 36 H 1.09009 * 109.46741 * 60.00270 * 17 16 14 37 37 H 1.08993 * 109.47373 * 300.00436 * 17 16 14 38 38 H 1.09006 * 109.46659 * 59.99927 * 18 17 16 39 39 H 1.09005 * 109.47449 * 300.01004 * 18 17 16 40 40 H 1.08006 * 125.89009 * 359.71336 * 20 19 18 41 41 H 1.08004 * 126.29266 * 180.02562 * 21 20 19 42 42 H 1.07995 * 126.28821 * 179.97438 * 22 21 20 43 43 H 1.08002 * 125.89342 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.7031 0.8020 2.9830 7 1 3.5431 1.0358 2.3457 8 6 2.5816 1.4102 4.2143 9 7 1.5590 1.1250 4.9905 10 14 3.8687 2.6403 4.7796 11 1 4.9096 2.7849 3.7304 12 1 3.2235 3.9556 5.0221 13 1 4.4966 2.1578 6.0359 14 6 2.7933 -1.7863 1.0726 15 8 3.1972 -2.3583 2.0629 16 6 3.1577 -2.3009 -0.2961 17 6 4.0378 -3.5446 -0.1558 18 6 4.4074 -4.0675 -1.5453 19 7 5.2495 -5.2586 -1.4109 20 6 4.8013 -6.5442 -1.3380 21 6 5.8705 -7.3574 -1.2205 22 6 7.0210 -6.5441 -1.2202 23 6 6.6110 -5.2649 -1.3382 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9564 0.8900 31 1 0.6903 0.2974 2.4843 32 1 1.6238 -1.0226 3.2292 33 1 1.4736 1.5527 5.8570 34 1 3.7029 -1.5301 -0.8408 35 1 2.2497 -2.5577 -0.8415 36 1 3.4929 -4.3156 0.3891 37 1 4.9459 -3.2875 0.3895 38 1 4.9521 -3.2965 -2.0905 39 1 3.4990 -4.3246 -2.0902 40 1 3.7679 -6.8569 -1.3650 41 1 5.8490 -8.4343 -1.1411 42 1 8.0433 -6.8829 -1.1403 43 1 7.2507 -4.3953 -1.3698 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598245396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:02 Heat of formation + Delta-G solvation = 1.551495 kcal Electronic energy + Delta-G solvation = -21641.947000 eV Core-core repulsion = 18494.803120 eV Total energy + Delta-G solvation = -3147.143880 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.09405 -39.29364 -36.13880 -34.85200 -32.86011 -31.24918 -30.84267 -28.76337 -27.91703 -26.79497 -26.02119 -23.21290 -21.90241 -21.09830 -20.45847 -19.95342 -18.12066 -17.37346 -16.49556 -16.49493 -15.61207 -15.14234 -14.59085 -14.32647 -14.21612 -13.58954 -13.55307 -13.42513 -13.09531 -12.76098 -12.38987 -12.25642 -12.07604 -12.01355 -11.85446 -11.71792 -11.63444 -11.50819 -11.16255 -10.96065 -10.85314 -10.80489 -10.58465 -10.39418 -10.02923 -9.54524 -8.92946 -8.59540 -8.43398 -8.15019 -7.66937 -6.04638 -4.07970 2.29134 2.94267 3.07251 3.28253 3.35432 3.37747 3.42662 3.89042 4.43625 4.57963 4.75609 4.91624 5.06004 5.18996 5.21901 5.24472 5.26912 5.30089 5.39590 5.52206 5.59281 5.60635 5.62961 5.66206 5.96958 6.02382 6.12012 6.22850 6.27615 6.28751 6.32645 6.32879 6.55956 6.92459 7.00197 7.09616 7.24673 7.39191 7.46044 7.55730 7.92268 8.24448 8.43022 8.90704 9.08907 9.56348 11.03573 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019727 B = 0.003803 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.038059 B = 7360.877216 C = 8104.463014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 C -0.157 4.157 4 N -0.593 5.593 5 C 0.245 3.755 6 C -0.518 4.518 7 H 0.058 0.942 8 C 0.059 3.941 9 N -0.895 5.895 10 Si 0.895 3.105 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.503 3.497 15 O -0.542 6.542 16 C -0.138 4.138 17 C -0.118 4.118 18 C 0.104 3.896 19 N -0.445 5.445 20 C -0.015 4.015 21 C -0.207 4.207 22 C -0.207 4.207 23 C -0.014 4.014 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.034 0.966 32 H 0.040 0.960 33 H 0.262 0.738 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.158 0.842 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.277 -7.785 -16.873 18.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 C -0.215 4.215 4 N -0.325 5.325 5 C 0.126 3.874 6 C -0.557 4.557 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.534 5.534 10 Si 0.723 3.277 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.290 3.710 15 O -0.419 6.419 16 C -0.179 4.179 17 C -0.157 4.157 18 C -0.018 4.018 19 N -0.120 5.120 20 C -0.145 4.145 21 C -0.232 4.232 22 C -0.232 4.232 23 C -0.144 4.144 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.176 0.824 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.173 -7.715 -16.196 18.071 hybrid contribution 0.638 0.843 0.443 1.146 sum 2.812 -6.872 -15.753 17.415 Atomic orbital electron populations 1.22161 0.95634 1.01754 1.02480 1.20994 0.94075 0.94136 0.87942 1.22144 1.01321 0.95742 1.02322 1.48345 1.49132 1.26419 1.08640 1.19236 0.95876 0.94965 0.77290 1.21468 1.08861 1.23329 1.02080 0.92372 1.24932 0.95758 0.97160 0.96368 1.69940 1.29511 1.43355 1.10642 0.86493 0.81630 0.80805 0.78796 1.19858 1.21023 1.20941 1.20241 0.79310 0.81046 0.90437 1.90688 1.53331 1.58159 1.39760 1.21616 1.00829 0.98217 0.97262 1.21690 1.01296 0.97419 0.95270 1.21953 0.95047 0.86050 0.98712 1.44186 1.06195 1.06254 1.55331 1.21825 0.99412 0.82922 1.10352 1.20870 0.92322 0.98892 1.11072 1.20870 0.98644 0.92576 1.11078 1.21840 0.83210 0.99165 1.10185 0.91289 0.92281 0.92960 0.90766 0.92788 0.93288 0.90043 0.94831 0.94155 0.92845 0.89342 0.89490 0.90502 0.90372 0.89322 0.89363 0.82432 0.85036 0.85029 0.82403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.17 37.16 0.34 -1.92 16 2 C 0.13 2.05 3.17 -67.93 -0.22 1.83 16 3 C -0.16 -2.49 8.47 37.16 0.31 -2.17 16 4 N -0.59 -12.02 2.39 -167.46 -0.40 -12.42 16 5 C 0.25 6.25 4.59 -5.19 -0.02 6.22 16 6 C -0.52 -14.28 7.83 -34.44 -0.27 -14.55 16 7 H 0.06 1.60 7.63 -52.48 -0.40 1.20 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.90 -26.37 13.29 55.43 0.74 -25.64 16 10 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 C 0.50 10.03 7.67 -10.99 -0.08 9.94 16 15 O -0.54 -13.46 15.56 5.55 0.09 -13.37 16 16 C -0.14 -1.82 4.01 -27.88 -0.11 -1.93 16 17 C -0.12 -1.52 4.83 -26.73 -0.13 -1.65 16 18 C 0.10 1.00 6.09 -4.05 -0.02 0.97 16 19 N -0.44 -5.18 2.75 -117.13 -0.32 -5.50 16 20 C -0.02 -0.18 11.43 -16.75 -0.19 -0.37 16 21 C -0.21 -2.47 10.86 -39.78 -0.43 -2.91 16 22 C -0.21 -2.50 10.86 -39.78 -0.43 -2.93 16 23 C -0.01 -0.16 11.43 -16.75 -0.19 -0.36 16 24 H 0.07 1.12 6.66 -51.93 -0.35 0.78 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.90 5.77 -51.93 -0.30 0.60 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.55 6.92 -51.93 -0.36 1.19 16 31 H 0.03 0.86 6.43 -51.93 -0.33 0.53 16 32 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.09 1.00 7.79 -51.93 -0.40 0.59 16 35 H 0.09 0.91 7.79 -51.93 -0.40 0.51 16 36 H 0.08 1.13 8.10 -51.92 -0.42 0.71 16 37 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.16 1.46 8.06 -52.48 -0.42 1.03 16 41 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 42 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.16 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 352.71 15.07 5.32 5.32 Total: -1.00 -33.55 352.71 -8.29 -41.84 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.14 Total: 1.32 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -1.55 Total: -8.24 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.01 Total: -43.56 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.55 -8.29 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598245396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.388 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds