Wall clock time and date at job start Tue Mar 31 2020 01:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47051 * 2 1 4 4 N 1.46501 * 109.47367 * 119.99803 * 2 1 3 5 5 C 1.46503 * 119.99767 * 300.00326 * 4 2 1 6 6 C 1.50700 * 109.47235 * 269.99736 * 5 4 2 7 7 H 1.08003 * 119.99464 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00211 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99869 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00147 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47021 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47153 * 119.99854 * 10 8 6 13 13 H 1.48503 * 109.47214 * 239.99708 * 10 8 6 14 14 C 1.34773 * 120.00118 * 119.99921 * 4 2 1 15 15 O 1.21286 * 119.99927 * 180.02562 * 14 4 2 16 16 C 1.50698 * 119.99983 * 0.02562 * 14 4 2 17 17 C 1.53003 * 109.47247 * 179.97438 * 16 14 4 18 18 C 1.52996 * 109.47487 * 179.97438 * 17 16 14 19 19 N 1.46494 * 109.47444 * 180.02562 * 18 17 16 20 20 C 1.36345 * 125.63345 * 90.00307 * 19 18 17 21 21 C 1.34850 * 108.21864 * 179.97438 * 20 19 18 22 22 C 1.40894 * 107.41649 * 0.02562 * 21 20 19 23 23 C 1.34846 * 107.41755 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.47277 * 299.99707 * 1 2 3 25 25 H 1.08993 * 109.46941 * 60.00341 * 1 2 3 26 26 H 1.09002 * 109.46856 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47047 * 239.99819 * 2 1 3 28 28 H 1.08998 * 109.47345 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46687 * 299.99797 * 3 2 1 30 30 H 1.09004 * 109.47255 * 59.99501 * 3 2 1 31 31 H 1.09005 * 109.46932 * 30.00216 * 5 4 2 32 32 H 1.09006 * 109.47029 * 149.99541 * 5 4 2 33 33 H 0.97003 * 120.00017 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47297 * 59.99935 * 16 14 4 35 35 H 1.08993 * 109.47290 * 299.99929 * 16 14 4 36 36 H 1.09009 * 109.46741 * 60.00270 * 17 16 14 37 37 H 1.08993 * 109.47373 * 300.00436 * 17 16 14 38 38 H 1.09006 * 109.46659 * 59.99927 * 18 17 16 39 39 H 1.09005 * 109.47449 * 300.01004 * 18 17 16 40 40 H 1.08006 * 125.89009 * 359.71336 * 20 19 18 41 41 H 1.08004 * 126.29266 * 180.02562 * 21 20 19 42 42 H 1.07995 * 126.28821 * 179.97438 * 22 21 20 43 43 H 1.08002 * 125.89342 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.7031 0.8020 2.9830 7 1 3.5431 1.0358 2.3457 8 6 2.5816 1.4102 4.2143 9 7 1.5590 1.1250 4.9905 10 14 3.8687 2.6403 4.7796 11 1 4.9096 2.7849 3.7304 12 1 3.2235 3.9556 5.0221 13 1 4.4966 2.1578 6.0359 14 6 2.7933 -1.7863 1.0726 15 8 3.1972 -2.3583 2.0629 16 6 3.1577 -2.3009 -0.2961 17 6 4.0378 -3.5446 -0.1558 18 6 4.4074 -4.0675 -1.5453 19 7 5.2495 -5.2586 -1.4109 20 6 4.8013 -6.5442 -1.3380 21 6 5.8705 -7.3574 -1.2205 22 6 7.0210 -6.5441 -1.2202 23 6 6.6110 -5.2649 -1.3382 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9564 0.8900 31 1 0.6903 0.2974 2.4843 32 1 1.6238 -1.0226 3.2292 33 1 1.4736 1.5527 5.8570 34 1 3.7029 -1.5301 -0.8408 35 1 2.2497 -2.5577 -0.8415 36 1 3.4929 -4.3156 0.3891 37 1 4.9459 -3.2875 0.3895 38 1 4.9521 -3.2965 -2.0905 39 1 3.4990 -4.3246 -2.0902 40 1 3.7679 -6.8569 -1.3650 41 1 5.8490 -8.4343 -1.1411 42 1 8.0433 -6.8829 -1.1403 43 1 7.2507 -4.3953 -1.3698 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598245396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:02 Heat of formation + Delta-G solvation = -18.001399 kcal Electronic energy + Delta-G solvation = -21642.794877 eV Core-core repulsion = 18494.803120 eV Total energy + Delta-G solvation = -3147.991757 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.93562 -40.83763 -37.63896 -35.91098 -34.91293 -32.40253 -32.29390 -29.64081 -29.60751 -27.99468 -27.31498 -24.93580 -23.18847 -22.40850 -21.31380 -20.78944 -19.51619 -18.62392 -18.48224 -17.75886 -16.89907 -16.77936 -16.09812 -15.50417 -15.45034 -14.82490 -14.78486 -14.62915 -14.23085 -14.12271 -13.87023 -13.42372 -13.31850 -13.23274 -12.94262 -12.91670 -12.86856 -12.76145 -12.67838 -12.60759 -12.43416 -12.20559 -12.07947 -11.79135 -11.61017 -11.49509 -10.63153 -10.55770 -9.47556 -9.40432 -9.01752 -8.20800 -6.32790 1.33786 1.36522 1.41770 1.47448 1.87437 2.11982 2.18456 2.33968 2.49474 3.08978 3.62794 3.82260 3.91380 4.03852 4.25436 4.28854 4.34704 4.35715 4.43152 4.45578 4.53326 4.63300 4.74374 4.80743 4.87485 4.90384 5.02132 5.04568 5.07987 5.13869 5.24311 5.25849 5.42754 5.45553 5.47346 5.59894 5.65036 5.90620 6.10759 6.13774 6.38610 6.58448 6.74285 6.87305 7.31492 7.53954 8.86648 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019727 B = 0.003803 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.038059 B = 7360.877216 C = 8104.463014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.125 3.875 3 C -0.153 4.153 4 N -0.599 5.599 5 C 0.263 3.737 6 C -0.524 4.524 7 H 0.054 0.946 8 C 0.004 3.996 9 N -0.931 5.931 10 Si 0.961 3.039 11 H -0.266 1.266 12 H -0.270 1.270 13 H -0.286 1.286 14 C 0.488 3.512 15 O -0.606 6.606 16 C -0.121 4.121 17 C -0.110 4.110 18 C 0.110 3.890 19 N -0.451 5.451 20 C -0.025 4.025 21 C -0.229 4.229 22 C -0.228 4.228 23 C -0.027 4.027 24 H 0.033 0.967 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.125 0.875 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.039 0.961 31 H 0.024 0.976 32 H -0.013 1.013 33 H 0.264 0.736 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.179 0.821 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.529 -6.998 -20.309 21.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.023 3.977 3 C -0.211 4.211 4 N -0.330 5.330 5 C 0.142 3.858 6 C -0.563 4.563 7 H 0.073 0.927 8 C -0.195 4.195 9 N -0.572 5.572 10 Si 0.787 3.213 11 H -0.190 1.190 12 H -0.196 1.196 13 H -0.212 1.212 14 C 0.278 3.722 15 O -0.488 6.488 16 C -0.161 4.161 17 C -0.149 4.149 18 C -0.010 4.010 19 N -0.126 5.126 20 C -0.155 4.155 21 C -0.253 4.253 22 C -0.253 4.253 23 C -0.157 4.157 24 H 0.052 0.948 25 H 0.116 0.884 26 H 0.077 0.923 27 H 0.142 0.858 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.005 0.995 33 H 0.073 0.927 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.196 0.804 41 H 0.160 0.840 42 H 0.159 0.841 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.411 -6.910 -19.689 21.005 hybrid contribution 0.529 0.561 1.518 1.702 sum 2.941 -6.349 -18.171 19.471 Atomic orbital electron populations 1.22134 0.94529 1.02246 1.02653 1.21460 0.95046 0.93954 0.87282 1.22093 1.00667 0.96047 1.02322 1.48410 1.49298 1.27034 1.08210 1.18611 0.95175 0.92444 0.79603 1.21705 1.08931 1.23417 1.02233 0.92728 1.25825 0.97836 0.99194 0.96596 1.70064 1.31359 1.44679 1.11095 0.85453 0.79089 0.78741 0.78064 1.19002 1.19562 1.21175 1.21566 0.77859 0.80080 0.92704 1.90656 1.55541 1.59930 1.42687 1.21613 1.02982 0.98719 0.92804 1.21561 0.99478 0.96794 0.97048 1.22041 0.96475 0.86007 0.96520 1.44383 1.06322 1.06809 1.55088 1.22255 1.00368 0.83090 1.09759 1.21193 0.92707 0.99788 1.11610 1.21186 0.99380 0.93143 1.11546 1.22227 0.83825 0.99731 1.09953 0.94781 0.88367 0.92346 0.85771 0.93718 0.89082 0.94193 0.95803 0.99479 0.92668 0.86046 0.85319 0.93037 0.93558 0.86776 0.86361 0.80395 0.84025 0.84135 0.80740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 9.17 71.98 0.66 -3.35 16 2 C 0.12 3.49 3.17 44.99 0.14 3.63 16 3 C -0.15 -4.50 8.47 71.98 0.61 -3.89 16 4 N -0.60 -24.23 2.39 -802.12 -1.91 -26.14 16 5 C 0.26 14.08 4.59 85.63 0.39 14.47 16 6 C -0.52 -29.85 7.83 25.60 0.20 -29.65 16 7 H 0.05 3.07 7.63 -2.91 -0.02 3.05 16 8 C 0.00 0.21 5.46 84.65 0.46 0.68 16 9 N -0.93 -56.93 13.29 21.44 0.28 -56.65 16 10 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 14 C 0.49 19.35 7.67 87.66 0.67 20.03 16 15 O -0.61 -31.54 15.56 -3.05 -0.05 -31.59 16 16 C -0.12 -2.76 4.01 29.85 0.12 -2.64 16 17 C -0.11 -2.64 4.83 30.59 0.15 -2.49 16 18 C 0.11 1.70 6.09 86.38 0.53 2.23 16 19 N -0.45 -9.53 2.75 -524.48 -1.44 -10.97 16 20 C -0.02 -0.53 11.43 83.21 0.95 0.42 16 21 C -0.23 -5.29 10.86 22.14 0.24 -5.05 16 22 C -0.23 -5.35 10.86 22.14 0.24 -5.11 16 23 C -0.03 -0.61 11.43 83.21 0.95 0.35 16 24 H 0.03 1.09 6.66 -2.39 -0.02 1.08 16 25 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.12 2.28 5.77 -2.39 -0.01 2.27 16 28 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.04 1.50 6.92 -2.38 -0.02 1.48 16 31 H 0.02 1.31 6.43 -2.38 -0.02 1.29 16 32 H -0.01 -0.82 7.42 -2.38 -0.02 -0.84 16 33 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.12 2.07 7.79 -2.39 -0.02 2.05 16 35 H 0.13 1.95 7.79 -2.39 -0.02 1.93 16 36 H 0.05 1.49 8.10 -2.38 -0.02 1.47 16 37 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 38 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.18 2.90 8.06 -2.91 -0.02 2.88 16 41 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 42 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 43 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -80.28 352.71 6.19 -74.09 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.96 Total: 14.31 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 6.32 Total: -10.39 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -3.07 Total: -93.76 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.05 Total: -31.59 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -80.28 6.19 -74.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598245396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.090 kcal (2) G-P(sol) polarization free energy of solvation -80.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds