Wall clock time and date at job start Tue Mar 31 2020 00:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47622 * 137.14844 * 3 2 1 5 5 C 1.37098 * 119.99843 * 273.06365 * 4 3 2 6 6 H 1.08004 * 119.99792 * 141.28382 * 5 4 3 7 7 C 1.38947 * 119.99944 * 321.27975 * 5 4 3 8 8 N 1.31413 * 120.00128 * 159.00945 * 7 5 4 9 9 Si 1.86799 * 120.00102 * 339.00449 * 7 5 4 10 10 H 1.48504 * 109.46978 * 95.32997 * 9 7 5 11 11 H 1.48493 * 109.47415 * 215.33296 * 9 7 5 12 12 H 1.48504 * 109.47208 * 335.33596 * 9 7 5 13 13 C 1.34777 * 119.99708 * 93.05454 * 4 3 2 14 14 O 1.21302 * 119.99317 * 184.93618 * 13 4 3 15 15 C 1.50690 * 120.00533 * 4.93697 * 13 4 3 16 16 H 1.09006 * 109.50187 * 34.87347 * 15 13 4 17 17 C 1.53117 * 109.53640 * 274.77753 * 15 13 4 18 18 C 1.53118 * 109.15252 * 182.37371 * 17 15 13 19 19 C 1.53041 * 109.27641 * 57.67535 * 18 17 15 20 20 N 1.46851 * 109.51256 * 300.80096 * 19 18 17 21 21 C 1.46893 * 110.99910 * 185.84732 * 20 19 18 22 22 C 1.53003 * 109.47267 * 298.95350 * 21 20 19 23 23 C 1.52994 * 109.47650 * 58.95316 * 21 20 19 24 24 C 1.46850 * 111.19743 * 61.74747 * 20 19 18 25 25 H 4.40645 * 5.51433 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.47101 * 17.14485 * 3 2 1 27 27 H 1.09001 * 109.47393 * 257.15010 * 3 2 1 28 28 H 0.97005 * 120.00107 * 179.97438 * 8 7 5 29 29 H 1.08995 * 109.52709 * 302.29036 * 17 15 13 30 30 H 1.09007 * 109.52085 * 62.47932 * 17 15 13 31 31 H 1.08994 * 109.51629 * 297.72752 * 18 17 15 32 32 H 1.08997 * 109.49441 * 177.60669 * 18 17 15 33 33 H 1.09004 * 109.46389 * 180.79397 * 19 18 17 34 34 H 1.08996 * 109.46756 * 60.81254 * 19 18 17 35 35 H 1.09007 * 109.47269 * 178.95587 * 21 20 19 36 36 H 1.08998 * 109.47057 * 60.00003 * 22 21 20 37 37 H 1.08995 * 109.47391 * 180.02562 * 22 21 20 38 38 H 1.09001 * 109.47054 * 300.00408 * 22 21 20 39 39 H 1.09007 * 109.47006 * 300.00432 * 23 21 20 40 40 H 1.08999 * 109.46865 * 59.99953 * 23 21 20 41 41 H 1.09002 * 109.47640 * 179.97438 * 23 21 20 42 42 H 1.09003 * 109.45727 * 58.27501 * 24 20 19 43 43 H 1.08998 * 109.46002 * 178.25290 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1339 1.0134 -0.9393 5 6 3.3028 0.6964 -2.2624 6 1 3.0473 1.4154 -3.0268 7 6 3.8027 -0.5497 -2.6199 8 7 3.5901 -1.0211 -3.8281 9 14 4.7772 -1.5550 -1.3833 10 1 3.8716 -2.5151 -0.7026 11 1 5.8505 -2.3011 -2.0878 12 1 5.3840 -0.6478 -0.3763 13 6 3.4167 2.2568 -0.5028 14 8 3.7346 3.1196 -1.2939 15 6 3.3379 2.5751 0.9680 16 1 3.6537 1.7064 1.5458 17 6 1.8969 2.9381 1.3369 18 6 1.8380 3.3172 2.8192 19 6 2.7973 4.4803 3.0817 20 7 4.1623 4.0829 2.7137 21 6 5.1309 5.1244 3.0811 22 6 4.7999 6.4162 2.3309 23 6 5.0605 5.3778 4.5883 24 6 4.2540 3.7595 1.2842 25 1 -1.0502 -0.0003 0.0000 26 1 3.0097 -0.9812 -0.3029 27 1 3.0092 0.2294 1.0019 28 1 3.9395 -1.8909 -4.0778 29 1 1.5674 3.7824 0.7314 30 1 1.2474 2.0820 1.1538 31 1 2.1303 2.4603 3.4261 32 1 0.8226 3.6175 3.0778 33 1 2.7683 4.7435 4.1391 34 1 2.4963 5.3412 2.4849 35 1 6.1357 4.7966 2.8143 36 1 3.7952 6.7440 2.5976 37 1 5.5189 7.1889 2.6031 38 1 4.8501 6.2358 1.2571 39 1 4.0557 5.7056 4.8551 40 1 5.2963 4.4575 5.1227 41 1 5.7795 6.1503 4.8609 42 1 3.9462 4.6240 0.6959 43 1 5.2829 3.4990 1.0361 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001617396444.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:47 Heat of formation + Delta-G solvation = 35.007701 kcal Electronic energy + Delta-G solvation = -22887.564743 eV Core-core repulsion = 19741.871633 eV Total energy + Delta-G solvation = -3145.693110 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.95022 -38.37088 -35.39755 -34.82341 -32.62010 -31.61120 -30.84881 -30.23059 -27.31679 -26.75473 -25.36959 -24.26404 -22.87444 -21.04832 -19.15903 -18.79336 -18.28682 -16.69760 -16.40522 -16.10064 -15.56660 -14.92504 -14.57726 -14.35574 -14.06228 -13.91002 -13.60575 -13.39259 -12.96232 -12.89356 -12.68432 -12.44500 -12.10994 -12.03708 -11.91069 -11.78290 -11.31789 -11.25002 -10.96700 -10.78454 -10.67123 -10.58905 -10.44753 -10.23588 -10.03698 -9.73974 -9.43756 -9.09873 -8.48279 -8.14166 -7.86687 -6.40000 -3.99972 2.99633 3.17264 3.19590 3.22386 3.38320 3.65596 3.91230 4.13136 4.55842 4.79850 4.85033 4.94316 5.02615 5.04305 5.16756 5.18361 5.29971 5.41565 5.47717 5.48300 5.56026 5.60814 5.72176 5.75142 5.81515 5.88074 5.92819 5.96524 6.01069 6.04211 6.15692 6.17247 6.21341 6.28440 6.43043 6.46003 6.57467 7.21662 7.22469 7.52467 8.12652 8.27574 8.46638 8.92967 9.28475 9.71304 10.72118 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021952 B = 0.005549 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.199749 B = 5045.045190 C = 5511.997449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.169 4.169 3 C 0.190 3.810 4 N -0.463 5.463 5 C -0.317 4.317 6 H 0.105 0.895 7 C 0.063 3.937 8 N -0.862 5.862 9 Si 0.866 3.134 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.259 1.259 13 C 0.481 3.519 14 O -0.558 6.558 15 C -0.103 4.103 16 H 0.089 0.911 17 C -0.114 4.114 18 C -0.113 4.113 19 C 0.049 3.951 20 N -0.533 5.533 21 C 0.076 3.924 22 C -0.189 4.189 23 C -0.144 4.144 24 C 0.076 3.924 25 H 0.213 0.787 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.274 0.726 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.283 7.214 16.955 18.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.170 4.170 3 C 0.068 3.932 4 N -0.184 5.184 5 C -0.444 4.444 6 H 0.123 0.877 7 C -0.143 4.143 8 N -0.498 5.498 9 Si 0.693 3.307 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.183 1.183 13 C 0.269 3.731 14 O -0.438 6.438 15 C -0.125 4.125 16 H 0.107 0.893 17 C -0.152 4.152 18 C -0.151 4.151 19 C -0.079 4.079 20 N -0.258 5.258 21 C -0.032 4.032 22 C -0.248 4.248 23 C -0.202 4.202 24 C -0.051 4.051 25 H 0.229 0.771 26 H 0.106 0.894 27 H 0.110 0.890 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.931 7.082 16.629 18.098 hybrid contribution 0.049 -0.111 -0.070 0.140 sum -0.882 6.972 16.559 17.988 Atomic orbital electron populations 1.24686 0.95626 1.01506 1.01916 1.23629 0.94782 0.99472 0.99123 1.18918 0.84240 0.95166 0.94923 1.43656 1.57334 1.08873 1.08547 1.19010 1.43014 1.01760 0.80651 0.87724 1.25333 0.96123 0.96758 0.96123 1.69750 1.41669 1.18421 1.19918 0.87101 0.80963 0.80459 0.82131 1.19971 1.20978 1.18344 1.20203 0.80207 0.83532 0.89133 1.90554 1.50257 1.45961 1.57069 1.21311 0.96672 0.99445 0.95095 0.89274 1.21602 0.95423 1.02249 0.95936 1.21575 0.98287 0.98635 0.96580 1.22175 0.88606 0.96676 1.00405 1.62158 1.04885 1.40416 1.18296 1.21668 0.96666 0.89648 0.95227 1.22497 1.01832 0.98781 1.01661 1.21882 1.01608 1.01665 0.94998 1.21810 0.99752 0.96982 0.86596 0.77052 0.89398 0.88996 0.91555 0.91906 0.90734 0.91146 0.91641 0.90693 0.94729 0.89985 0.92514 0.92342 0.91960 0.92598 0.91894 0.92500 0.93212 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.73 19.01 29.55 0.56 -3.17 16 2 C -0.17 -3.31 11.68 -37.12 -0.43 -3.75 16 3 C 0.19 3.95 4.55 -6.83 -0.03 3.92 16 4 N -0.46 -11.34 2.12 -117.93 -0.25 -11.60 16 5 C -0.32 -9.09 9.35 -14.93 -0.14 -9.23 16 6 H 0.11 3.39 7.89 -52.48 -0.41 2.97 16 7 C 0.06 1.74 5.33 -17.47 -0.09 1.65 16 8 N -0.86 -25.12 13.96 55.50 0.77 -24.34 16 9 Si 0.87 20.23 25.00 -169.99 -4.25 15.98 16 10 H -0.27 -5.95 6.69 56.52 0.38 -5.57 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.26 -5.88 7.11 56.52 0.40 -5.47 16 13 C 0.48 11.25 6.73 -10.99 -0.07 11.17 16 14 O -0.56 -15.06 15.95 5.54 0.09 -14.97 16 15 C -0.10 -1.84 1.92 -91.70 -0.18 -2.02 16 16 H 0.09 1.51 6.19 -51.93 -0.32 1.18 16 17 C -0.11 -1.79 5.22 -26.61 -0.14 -1.93 16 18 C -0.11 -1.39 6.09 -26.65 -0.16 -1.55 16 19 C 0.05 0.59 4.66 -3.83 -0.02 0.57 16 20 N -0.53 -7.12 4.66 -226.69 -1.06 -8.17 16 21 C 0.08 0.87 2.98 -67.72 -0.20 0.67 16 22 C -0.19 -2.09 8.51 37.16 0.32 -1.77 16 23 C -0.14 -1.32 8.94 37.15 0.33 -0.99 16 24 C 0.08 1.26 3.81 -3.83 -0.01 1.24 16 25 H 0.21 2.68 7.80 -54.08 -0.42 2.26 16 26 H 0.09 1.91 3.18 -51.93 -0.17 1.75 16 27 H 0.09 1.60 5.71 -51.93 -0.30 1.30 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.20 5.52 -51.93 -0.29 0.92 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.77 5.98 -51.93 -0.31 0.46 16 34 H 0.03 0.43 6.65 -51.93 -0.35 0.09 16 35 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 36 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.80 6.60 -51.93 -0.34 0.45 16 39 H 0.06 0.49 6.26 -51.93 -0.33 0.16 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.05 0.89 6.39 -51.93 -0.33 0.56 16 43 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 LS Contribution 329.47 15.07 4.97 4.97 Total: -1.00 -31.67 329.47 -6.44 -38.11 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.44 Total: 5.21 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -0.27 Total: -5.18 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -0.53 Total: -44.11 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.09 Total: -14.97 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.25 Total: 15.98 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.67 -6.44 -38.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617396444.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.115 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds