Wall clock time and date at job start Tue Mar 31 2020 00:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47622 * 137.14844 * 3 2 1 5 5 C 1.37098 * 119.99843 * 273.06365 * 4 3 2 6 6 H 1.08004 * 119.99792 * 141.28382 * 5 4 3 7 7 C 1.38947 * 119.99944 * 321.27975 * 5 4 3 8 8 N 1.31413 * 120.00128 * 159.00945 * 7 5 4 9 9 Si 1.86799 * 120.00102 * 339.00449 * 7 5 4 10 10 H 1.48504 * 109.46978 * 95.32997 * 9 7 5 11 11 H 1.48493 * 109.47415 * 215.33296 * 9 7 5 12 12 H 1.48504 * 109.47208 * 335.33596 * 9 7 5 13 13 C 1.34777 * 119.99708 * 93.05454 * 4 3 2 14 14 O 1.21302 * 119.99317 * 184.93618 * 13 4 3 15 15 C 1.50690 * 120.00533 * 4.93697 * 13 4 3 16 16 H 1.09006 * 109.50187 * 34.87347 * 15 13 4 17 17 C 1.53117 * 109.53640 * 274.77753 * 15 13 4 18 18 C 1.53118 * 109.15252 * 182.37371 * 17 15 13 19 19 C 1.53041 * 109.27641 * 57.67535 * 18 17 15 20 20 N 1.46851 * 109.51256 * 300.80096 * 19 18 17 21 21 C 1.46893 * 110.99910 * 185.84732 * 20 19 18 22 22 C 1.53003 * 109.47267 * 298.95350 * 21 20 19 23 23 C 1.52994 * 109.47650 * 58.95316 * 21 20 19 24 24 C 1.46850 * 111.19743 * 61.74747 * 20 19 18 25 25 H 4.40645 * 5.51433 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.47101 * 17.14485 * 3 2 1 27 27 H 1.09001 * 109.47393 * 257.15010 * 3 2 1 28 28 H 0.97005 * 120.00107 * 179.97438 * 8 7 5 29 29 H 1.08995 * 109.52709 * 302.29036 * 17 15 13 30 30 H 1.09007 * 109.52085 * 62.47932 * 17 15 13 31 31 H 1.08994 * 109.51629 * 297.72752 * 18 17 15 32 32 H 1.08997 * 109.49441 * 177.60669 * 18 17 15 33 33 H 1.09004 * 109.46389 * 180.79397 * 19 18 17 34 34 H 1.08996 * 109.46756 * 60.81254 * 19 18 17 35 35 H 1.09007 * 109.47269 * 178.95587 * 21 20 19 36 36 H 1.08998 * 109.47057 * 60.00003 * 22 21 20 37 37 H 1.08995 * 109.47391 * 180.02562 * 22 21 20 38 38 H 1.09001 * 109.47054 * 300.00408 * 22 21 20 39 39 H 1.09007 * 109.47006 * 300.00432 * 23 21 20 40 40 H 1.08999 * 109.46865 * 59.99953 * 23 21 20 41 41 H 1.09002 * 109.47640 * 179.97438 * 23 21 20 42 42 H 1.09003 * 109.45727 * 58.27501 * 24 20 19 43 43 H 1.08998 * 109.46002 * 178.25290 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1339 1.0134 -0.9393 5 6 3.3028 0.6964 -2.2624 6 1 3.0473 1.4154 -3.0268 7 6 3.8027 -0.5497 -2.6199 8 7 3.5901 -1.0211 -3.8281 9 14 4.7772 -1.5550 -1.3833 10 1 3.8716 -2.5151 -0.7026 11 1 5.8505 -2.3011 -2.0878 12 1 5.3840 -0.6478 -0.3763 13 6 3.4167 2.2568 -0.5028 14 8 3.7346 3.1196 -1.2939 15 6 3.3379 2.5751 0.9680 16 1 3.6537 1.7064 1.5458 17 6 1.8969 2.9381 1.3369 18 6 1.8380 3.3172 2.8192 19 6 2.7973 4.4803 3.0817 20 7 4.1623 4.0829 2.7137 21 6 5.1309 5.1244 3.0811 22 6 4.7999 6.4162 2.3309 23 6 5.0605 5.3778 4.5883 24 6 4.2540 3.7595 1.2842 25 1 -1.0502 -0.0003 0.0000 26 1 3.0097 -0.9812 -0.3029 27 1 3.0092 0.2294 1.0019 28 1 3.9395 -1.8909 -4.0778 29 1 1.5674 3.7824 0.7314 30 1 1.2474 2.0820 1.1538 31 1 2.1303 2.4603 3.4261 32 1 0.8226 3.6175 3.0778 33 1 2.7683 4.7435 4.1391 34 1 2.4963 5.3412 2.4849 35 1 6.1357 4.7966 2.8143 36 1 3.7952 6.7440 2.5976 37 1 5.5189 7.1889 2.6031 38 1 4.8501 6.2358 1.2571 39 1 4.0557 5.7056 4.8551 40 1 5.2963 4.4575 5.1227 41 1 5.7795 6.1503 4.8609 42 1 3.9462 4.6240 0.6959 43 1 5.2829 3.4990 1.0361 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001617396444.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:46 Heat of formation + Delta-G solvation = 13.268362 kcal Electronic energy + Delta-G solvation = -22888.507432 eV Core-core repulsion = 19741.871633 eV Total energy + Delta-G solvation = -3146.635799 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.43402 -39.78977 -37.25048 -36.01430 -34.49041 -33.35137 -32.07129 -31.33160 -28.47728 -28.14338 -27.18606 -25.42913 -24.25331 -22.27121 -20.44130 -20.26781 -19.99014 -18.46902 -17.99515 -17.62947 -17.06994 -16.02817 -15.97573 -15.69054 -15.45478 -15.18223 -15.08352 -14.84338 -14.52589 -14.44896 -14.05555 -13.93283 -13.48816 -13.33342 -12.91049 -12.85789 -12.74315 -12.63035 -12.44050 -12.16204 -12.04920 -11.79630 -11.68512 -11.49452 -11.36437 -11.28166 -11.13340 -10.85654 -10.33051 -9.90878 -9.23357 -8.54917 -6.21307 1.15367 1.28141 1.40627 1.65045 1.88418 1.93298 2.14576 2.64568 2.87295 3.11579 3.57358 3.68701 3.79984 3.87212 4.02969 4.07636 4.16878 4.24399 4.27982 4.31979 4.39445 4.46078 4.61296 4.66374 4.76289 4.79032 4.79586 4.91617 4.95947 5.06914 5.08470 5.09276 5.12356 5.21534 5.31000 5.39856 5.45560 5.49352 5.98616 6.09926 6.23173 6.47358 6.73262 6.86298 7.20269 7.75918 8.62378 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021952 B = 0.005549 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.199749 B = 5045.045190 C = 5511.997449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.228 4.228 3 C 0.190 3.810 4 N -0.472 5.472 5 C -0.337 4.337 6 H 0.041 0.959 7 C 0.016 3.984 8 N -0.908 5.908 9 Si 0.937 3.063 10 H -0.239 1.239 11 H -0.281 1.281 12 H -0.248 1.248 13 C 0.473 3.527 14 O -0.610 6.610 15 C -0.091 4.091 16 H 0.108 0.892 17 C -0.109 4.109 18 C -0.104 4.104 19 C 0.046 3.954 20 N -0.530 5.530 21 C 0.071 3.929 22 C -0.184 4.184 23 C -0.136 4.136 24 C 0.086 3.914 25 H 0.254 0.746 26 H 0.079 0.921 27 H 0.127 0.873 28 H 0.281 0.719 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.027 0.973 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.026 0.974 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.930 6.504 21.375 22.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.229 4.229 3 C 0.069 3.931 4 N -0.193 5.193 5 C -0.465 4.465 6 H 0.059 0.941 7 C -0.187 4.187 8 N -0.545 5.545 9 Si 0.759 3.241 10 H -0.164 1.164 11 H -0.208 1.208 12 H -0.171 1.171 13 C 0.263 3.737 14 O -0.493 6.493 15 C -0.113 4.113 16 H 0.125 0.875 17 C -0.147 4.147 18 C -0.142 4.142 19 C -0.081 4.081 20 N -0.254 5.254 21 C -0.037 4.037 22 C -0.243 4.243 23 C -0.193 4.193 24 C -0.043 4.043 25 H 0.270 0.730 26 H 0.097 0.903 27 H 0.145 0.855 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.046 0.954 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.044 0.956 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.603 6.364 21.082 22.080 hybrid contribution 0.147 0.209 -1.546 1.567 sum -1.456 6.574 19.536 20.664 Atomic orbital electron populations 1.25671 0.96497 0.98434 0.99019 1.23652 0.95213 1.02239 1.01804 1.18990 0.85517 0.93348 0.95270 1.43747 1.57789 1.10157 1.07607 1.18578 1.44811 1.01175 0.81910 0.94128 1.26137 0.96266 0.97730 0.98550 1.69865 1.42752 1.19486 1.22447 0.85986 0.79341 0.79198 0.79543 1.16431 1.20768 1.17137 1.21267 0.78429 0.82550 0.91426 1.90515 1.52220 1.47484 1.59120 1.21271 0.98844 1.00639 0.90561 0.87461 1.21584 0.93320 1.01375 0.98453 1.21572 0.99916 0.99176 0.93512 1.22304 0.87536 0.96375 1.01880 1.62198 1.06275 1.41617 1.15313 1.21805 0.95822 0.89002 0.97077 1.22448 1.02669 0.99329 0.99854 1.21825 1.02659 1.02290 0.92537 1.21586 0.98376 0.95597 0.88735 0.72953 0.90322 0.85548 0.90924 0.93931 0.90923 0.89875 0.89134 0.87832 0.95444 0.90640 0.92042 0.90597 0.94718 0.91726 0.91764 0.90952 0.95550 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.56 19.01 74.32 1.41 -4.15 16 2 C -0.23 -8.58 11.68 31.13 0.36 -8.21 16 3 C 0.19 7.66 4.55 84.57 0.38 8.05 16 4 N -0.47 -23.79 2.12 -645.41 -1.37 -25.16 16 5 C -0.34 -20.47 9.35 84.04 0.79 -19.68 16 6 H 0.04 2.90 7.89 -2.91 -0.02 2.88 16 7 C 0.02 0.90 5.33 84.93 0.45 1.35 16 8 N -0.91 -55.12 13.96 21.66 0.30 -54.82 16 9 Si 0.94 41.74 25.00 68.60 1.72 43.46 16 10 H -0.24 -9.38 6.69 99.48 0.67 -8.72 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 12 H -0.25 -10.50 7.11 99.48 0.71 -9.79 16 13 C 0.47 22.99 6.73 87.65 0.59 23.58 16 14 O -0.61 -35.31 15.95 -3.10 -0.05 -35.36 16 15 C -0.09 -3.23 1.92 -11.49 -0.02 -3.25 16 16 H 0.11 3.38 6.19 -2.38 -0.01 3.37 16 17 C -0.11 -3.27 5.22 30.67 0.16 -3.11 16 18 C -0.10 -2.19 6.09 30.65 0.19 -2.00 16 19 C 0.05 0.97 4.66 86.33 0.40 1.37 16 20 N -0.53 -13.12 4.66 -871.11 -4.06 -17.18 16 21 C 0.07 1.48 2.98 44.92 0.13 1.62 16 22 C -0.18 -3.88 8.51 71.98 0.61 -3.27 16 23 C -0.14 -2.01 8.94 71.98 0.64 -1.37 16 24 C 0.09 2.84 3.81 86.32 0.33 3.17 16 25 H 0.25 5.26 7.80 -4.41 -0.03 5.22 16 26 H 0.08 3.28 3.18 -2.39 -0.01 3.27 16 27 H 0.13 4.06 5.71 -2.39 -0.01 4.04 16 28 H 0.28 15.54 8.31 -92.70 -0.77 14.77 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 2.21 5.52 -2.38 -0.01 2.20 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.10 1.65 5.98 -2.38 -0.01 1.63 16 34 H 0.03 0.63 6.65 -2.39 -0.02 0.61 16 35 H 0.08 1.67 8.11 -2.38 -0.02 1.65 16 36 H 0.06 1.22 6.56 -2.39 -0.02 1.21 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.03 0.91 6.60 -2.39 -0.02 0.89 16 39 H 0.06 0.85 6.26 -2.38 -0.01 0.84 16 40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.03 0.99 6.39 -2.39 -0.02 0.97 16 43 H 0.06 2.15 8.10 -2.39 -0.02 2.13 16 Total: -1.00 -75.79 329.47 3.93 -71.85 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.96 Total: 23.10 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 6.44 Total: -5.90 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -5.12 Total: -97.16 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -0.05 Total: -35.36 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 1.72 Total: 43.46 kcal Total: -75.79 3.93 -71.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617396444.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.121 kcal (2) G-P(sol) polarization free energy of solvation -75.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds