Wall clock time and date at job start Tue Mar 31 2020 01:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46905 * 109.46949 * 145.57810 * 3 2 1 5 5 C 1.46196 * 110.99624 * 169.99776 * 4 3 2 6 6 C 1.51275 * 109.09282 * 144.76453 * 5 4 3 7 7 C 1.53828 * 109.64517 * 92.39978 * 6 5 4 8 8 N 1.47611 * 111.28289 * 319.98213 * 7 6 5 9 9 C 1.34779 * 118.74302 * 138.30985 * 8 7 6 10 10 O 1.21284 * 120.00415 * 359.97438 * 9 8 7 11 11 C 1.50704 * 119.99823 * 179.97438 * 9 8 7 12 12 C 1.52995 * 109.47082 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47090 * 180.02562 * 12 11 9 14 14 C 1.50695 * 109.46872 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00417 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99710 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00189 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99990 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47222 * 59.99741 * 18 16 14 20 20 H 1.48504 * 109.47156 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47323 * 299.99639 * 18 16 14 22 22 C 1.44878 * 122.50684 * 318.28356 * 8 7 6 23 23 C 1.41440 * 111.00221 * 38.96183 * 4 3 2 24 24 H 4.40885 * 5.52269 * 180.02562 * 4 1 2 25 25 H 1.08994 * 109.47756 * 25.57457 * 3 2 1 26 26 H 1.08999 * 109.47521 * 265.57541 * 3 2 1 27 27 H 1.09004 * 109.53617 * 264.64203 * 5 4 3 28 28 H 1.08995 * 109.54008 * 24.87494 * 5 4 3 29 29 H 1.09001 * 109.44290 * 212.45604 * 6 5 4 30 30 H 1.09000 * 109.44339 * 332.35844 * 6 5 4 31 31 H 1.09004 * 109.13044 * 199.51047 * 7 6 5 32 32 H 1.09004 * 109.06489 * 80.41050 * 7 6 5 33 33 H 1.08993 * 109.47236 * 300.00045 * 11 9 8 34 34 H 1.09005 * 109.46547 * 59.99931 * 11 9 8 35 35 H 1.08993 * 109.47456 * 300.00320 * 12 11 9 36 36 H 1.09001 * 109.46758 * 60.00429 * 12 11 9 37 37 H 1.09001 * 109.46727 * 300.00195 * 13 12 11 38 38 H 1.08993 * 109.47107 * 60.00087 * 13 12 11 39 39 H 0.96995 * 120.00185 * 180.02562 * 17 16 14 40 40 H 1.08994 * 109.43943 * 329.67795 * 22 8 7 41 41 H 1.09008 * 109.43630 * 209.80943 * 22 8 7 42 42 H 1.09004 * 109.38644 * 311.84969 * 23 4 3 43 43 H 1.08997 * 109.38827 * 71.52668 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1350 1.1434 -0.7829 5 6 4.5768 1.3159 -0.6133 6 6 5.1746 1.7958 -1.9175 7 6 5.2218 3.3333 -1.9299 8 7 4.0010 3.9117 -1.3348 9 6 4.1209 4.9727 -0.5124 10 8 5.2168 5.4340 -0.2734 11 6 2.8931 5.5859 0.1102 12 6 3.3043 6.7654 0.9937 13 6 2.0578 7.3876 1.6263 14 6 2.4628 8.5497 2.4960 15 1 3.5050 8.8176 2.5887 16 6 1.5028 9.2705 3.1743 17 7 0.2338 8.9442 3.0620 18 14 2.0048 10.7107 4.2530 19 1 2.7009 11.7292 3.4264 20 1 0.7950 11.3146 4.8669 21 1 2.9175 10.2334 5.3227 22 6 2.6789 3.3826 -1.6015 23 6 2.3355 2.2889 -0.5617 24 1 -1.0503 -0.0002 0.0003 25 1 3.0098 -0.9261 -0.4436 26 1 3.0093 0.0801 1.0246 27 1 4.7665 2.0526 0.1674 28 1 5.0276 0.3635 -0.3344 29 1 6.1853 1.4009 -2.0204 30 1 4.5622 1.4451 -2.7481 31 1 5.3156 3.6795 -2.9593 32 1 6.0892 3.6675 -1.3607 33 1 2.2236 5.9360 -0.6754 34 1 2.3818 4.8387 0.7171 35 1 3.9736 6.4150 1.7793 36 1 3.8158 7.5127 0.3870 37 1 1.3881 7.7380 0.8409 38 1 1.5466 6.6402 2.2330 39 1 -0.4415 9.4514 3.5389 40 1 2.6558 2.9515 -2.6023 41 1 1.9464 4.1872 -1.5369 42 1 1.2834 2.0192 -0.6542 43 1 2.5221 2.6721 0.4415 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001628354668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:22 Heat of formation + Delta-G solvation = 20.852375 kcal Electronic energy + Delta-G solvation = -21833.769133 eV Core-core repulsion = 18687.462202 eV Total energy + Delta-G solvation = -3146.306931 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.43810 -38.52888 -35.60946 -34.28527 -33.54726 -32.59942 -31.81568 -29.16997 -28.10928 -26.50330 -25.37768 -23.93603 -22.12013 -20.87728 -20.13915 -18.84257 -18.21321 -17.00802 -16.49352 -16.20056 -15.93033 -15.65564 -15.42520 -14.72963 -14.39185 -14.25462 -13.84862 -13.60389 -13.20932 -13.00984 -12.55743 -12.21416 -12.18344 -11.91891 -11.75374 -11.58018 -11.36747 -11.15967 -11.03032 -10.75971 -10.64113 -10.56415 -10.52870 -10.36737 -9.65130 -9.59660 -9.23386 -8.99879 -8.62311 -8.42284 -8.30164 -5.96051 -3.97417 2.44201 2.60952 2.90869 3.10653 3.37579 3.40828 3.44841 3.74639 4.11944 4.50150 4.56521 4.76511 4.83495 4.87603 5.01220 5.14511 5.19349 5.24959 5.34544 5.39898 5.40284 5.47231 5.62488 5.69876 5.72194 5.72418 5.76722 5.79869 5.86695 6.02778 6.29555 6.58266 6.74673 6.78235 6.95559 7.09302 7.18100 7.36133 7.50522 7.72444 7.85614 8.04593 8.44276 8.48938 9.09360 9.66347 11.15432 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019347 B = 0.003748 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.909950 B = 7468.649270 C = 8516.731426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.189 4.189 3 C 0.169 3.831 4 N -0.557 5.557 5 C 0.072 3.928 6 C -0.128 4.128 7 C 0.110 3.890 8 N -0.617 5.617 9 C 0.509 3.491 10 O -0.538 6.538 11 C -0.138 4.138 12 C -0.095 4.095 13 C 0.021 3.979 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.114 3.886 23 C 0.046 3.954 24 H 0.219 0.781 25 H 0.096 0.904 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.830 -20.617 -11.175 23.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.189 4.189 3 C 0.044 3.956 4 N -0.282 5.282 5 C -0.055 4.055 6 C -0.167 4.167 7 C -0.012 4.012 8 N -0.352 5.352 9 C 0.299 3.701 10 O -0.415 6.415 11 C -0.177 4.177 12 C -0.133 4.133 13 C -0.016 4.016 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.538 5.538 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.011 4.011 23 C -0.084 4.084 24 H 0.236 0.764 25 H 0.114 0.886 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.229 -20.388 -11.442 23.759 hybrid contribution -0.064 0.879 1.380 1.638 sum 4.165 -19.509 -10.061 22.342 Atomic orbital electron populations 1.24989 0.95982 0.99706 1.00262 1.22789 0.94301 1.00913 1.00888 1.19081 0.84607 0.95067 0.96875 1.58510 1.03692 1.06468 1.59550 1.21525 0.85717 1.00718 0.97554 1.21849 1.01324 0.94829 0.98681 1.21789 0.88114 0.92957 0.98345 1.47953 1.06978 1.31894 1.48378 1.21361 0.92002 0.79193 0.77569 1.90653 1.28685 1.61361 1.60761 1.21902 0.95018 1.00306 1.00509 1.21450 1.00381 0.94178 0.97273 1.19117 0.91780 0.95298 0.95359 1.21238 0.93298 1.13825 1.27313 0.92656 1.25012 0.94958 0.97604 0.96865 1.69949 0.99959 1.40656 1.43187 0.86657 0.77789 0.82759 0.80810 1.20218 1.21322 1.20248 1.21682 0.84015 0.96204 0.99171 1.21955 0.98176 0.90245 0.97987 0.76427 0.88604 0.92395 0.93406 0.90871 0.90340 0.90214 0.92176 0.89481 0.89390 0.89643 0.92861 0.92721 0.96621 0.96703 0.93030 0.89821 0.89221 0.88949 0.94925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.69 18.80 29.55 0.56 -1.13 16 2 C -0.19 -1.84 11.27 -37.12 -0.42 -2.26 16 3 C 0.17 1.46 5.61 -6.61 -0.04 1.43 16 4 N -0.56 -5.33 4.03 -243.02 -0.98 -6.31 16 5 C 0.07 0.66 5.28 -5.08 -0.03 0.63 16 6 C -0.13 -1.07 5.78 -27.17 -0.16 -1.23 16 7 C 0.11 1.22 6.15 -3.00 -0.02 1.20 16 8 N -0.62 -7.98 2.18 -172.43 -0.38 -8.36 16 9 C 0.51 8.60 7.63 -10.98 -0.08 8.51 16 10 O -0.54 -11.06 15.28 5.55 0.08 -10.98 16 11 C -0.14 -2.39 4.19 -27.88 -0.12 -2.50 16 12 C -0.09 -2.11 4.44 -26.73 -0.12 -2.23 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 18 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C 0.11 1.21 5.30 -3.98 -0.02 1.19 16 23 C 0.05 0.50 4.95 -5.75 -0.03 0.47 16 24 H 0.22 1.26 7.80 -54.08 -0.42 0.83 16 25 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 27 H 0.05 0.56 7.32 -51.93 -0.38 0.18 16 28 H 0.07 0.53 7.71 -51.93 -0.40 0.13 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.66 7.98 -51.93 -0.41 0.24 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 1.12 6.99 -51.93 -0.36 0.76 16 33 H 0.09 1.39 7.31 -51.93 -0.38 1.01 16 34 H 0.09 1.39 7.21 -51.93 -0.37 1.01 16 35 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 36 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.08 0.79 8.11 -51.93 -0.42 0.37 16 41 H 0.09 0.93 6.24 -51.92 -0.32 0.61 16 42 H 0.09 0.97 5.71 -51.93 -0.30 0.68 16 43 H 0.03 0.42 7.34 -51.93 -0.38 0.03 16 LS Contribution 345.33 15.07 5.20 5.20 Total: -1.00 -33.76 345.33 -8.44 -42.21 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -7.07 Total: -2.96 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -1.02 Total: -9.45 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: -0.62 Total: -41.21 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.76 -8.44 -42.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628354668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.061 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds