Wall clock time and date at job start Tue Mar 31 2020 01:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46905 * 109.46949 * 145.57810 * 3 2 1 5 5 C 1.46196 * 110.99624 * 169.99776 * 4 3 2 6 6 C 1.51275 * 109.09282 * 144.76453 * 5 4 3 7 7 C 1.53828 * 109.64517 * 92.39978 * 6 5 4 8 8 N 1.47611 * 111.28289 * 319.98213 * 7 6 5 9 9 C 1.34779 * 118.74302 * 138.30985 * 8 7 6 10 10 O 1.21284 * 120.00415 * 359.97438 * 9 8 7 11 11 C 1.50704 * 119.99823 * 179.97438 * 9 8 7 12 12 C 1.52995 * 109.47082 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47090 * 180.02562 * 12 11 9 14 14 C 1.50695 * 109.46872 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00417 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99710 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00189 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99990 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47222 * 59.99741 * 18 16 14 20 20 H 1.48504 * 109.47156 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47323 * 299.99639 * 18 16 14 22 22 C 1.44878 * 122.50684 * 318.28356 * 8 7 6 23 23 C 1.41440 * 111.00221 * 38.96183 * 4 3 2 24 24 H 4.40885 * 5.52269 * 180.02562 * 4 1 2 25 25 H 1.08994 * 109.47756 * 25.57457 * 3 2 1 26 26 H 1.08999 * 109.47521 * 265.57541 * 3 2 1 27 27 H 1.09004 * 109.53617 * 264.64203 * 5 4 3 28 28 H 1.08995 * 109.54008 * 24.87494 * 5 4 3 29 29 H 1.09001 * 109.44290 * 212.45604 * 6 5 4 30 30 H 1.09000 * 109.44339 * 332.35844 * 6 5 4 31 31 H 1.09004 * 109.13044 * 199.51047 * 7 6 5 32 32 H 1.09004 * 109.06489 * 80.41050 * 7 6 5 33 33 H 1.08993 * 109.47236 * 300.00045 * 11 9 8 34 34 H 1.09005 * 109.46547 * 59.99931 * 11 9 8 35 35 H 1.08993 * 109.47456 * 300.00320 * 12 11 9 36 36 H 1.09001 * 109.46758 * 60.00429 * 12 11 9 37 37 H 1.09001 * 109.46727 * 300.00195 * 13 12 11 38 38 H 1.08993 * 109.47107 * 60.00087 * 13 12 11 39 39 H 0.96995 * 120.00185 * 180.02562 * 17 16 14 40 40 H 1.08994 * 109.43943 * 329.67795 * 22 8 7 41 41 H 1.09008 * 109.43630 * 209.80943 * 22 8 7 42 42 H 1.09004 * 109.38644 * 311.84969 * 23 4 3 43 43 H 1.08997 * 109.38827 * 71.52668 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1350 1.1434 -0.7829 5 6 4.5768 1.3159 -0.6133 6 6 5.1746 1.7958 -1.9175 7 6 5.2218 3.3333 -1.9299 8 7 4.0010 3.9117 -1.3348 9 6 4.1209 4.9727 -0.5124 10 8 5.2168 5.4340 -0.2734 11 6 2.8931 5.5859 0.1102 12 6 3.3043 6.7654 0.9937 13 6 2.0578 7.3876 1.6263 14 6 2.4628 8.5497 2.4960 15 1 3.5050 8.8176 2.5887 16 6 1.5028 9.2705 3.1743 17 7 0.2338 8.9442 3.0620 18 14 2.0048 10.7107 4.2530 19 1 2.7009 11.7292 3.4264 20 1 0.7950 11.3146 4.8669 21 1 2.9175 10.2334 5.3227 22 6 2.6789 3.3826 -1.6015 23 6 2.3355 2.2889 -0.5617 24 1 -1.0503 -0.0002 0.0003 25 1 3.0098 -0.9261 -0.4436 26 1 3.0093 0.0801 1.0246 27 1 4.7665 2.0526 0.1674 28 1 5.0276 0.3635 -0.3344 29 1 6.1853 1.4009 -2.0204 30 1 4.5622 1.4451 -2.7481 31 1 5.3156 3.6795 -2.9593 32 1 6.0892 3.6675 -1.3607 33 1 2.2236 5.9360 -0.6754 34 1 2.3818 4.8387 0.7171 35 1 3.9736 6.4150 1.7793 36 1 3.8158 7.5127 0.3870 37 1 1.3881 7.7380 0.8409 38 1 1.5466 6.6402 2.2330 39 1 -0.4415 9.4514 3.5389 40 1 2.6558 2.9515 -2.6023 41 1 1.9464 4.1872 -1.5369 42 1 1.2834 2.0192 -0.6542 43 1 2.5221 2.6721 0.4415 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001628354668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:21 Heat of formation + Delta-G solvation = 0.094274 kcal Electronic energy + Delta-G solvation = -21834.669272 eV Core-core repulsion = 18687.462202 eV Total energy + Delta-G solvation = -3147.207070 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.52864 -39.56820 -36.66053 -36.15938 -34.58605 -33.91056 -33.18987 -30.12755 -29.76031 -27.57044 -26.22437 -25.72356 -23.35840 -22.03919 -21.53215 -19.99098 -18.99920 -18.52452 -18.03227 -17.32909 -17.11807 -16.62705 -16.48516 -16.40465 -15.70826 -15.47403 -14.79256 -14.58983 -14.46166 -14.26868 -13.94160 -13.73173 -13.45285 -13.17924 -13.06757 -12.79857 -12.62707 -12.52530 -12.45357 -12.28875 -11.92016 -11.85001 -11.59018 -11.47134 -11.34887 -11.27358 -11.07579 -10.71857 -10.55560 -9.69002 -9.22842 -8.21275 -6.31675 1.38565 1.41638 1.49765 1.57264 1.74330 1.92410 2.01117 2.40775 3.01540 3.11475 3.48592 3.58138 3.87582 3.96042 4.06683 4.12963 4.14117 4.18406 4.29510 4.43584 4.51515 4.59028 4.62946 4.69674 4.73797 4.82592 4.88597 4.91430 5.02963 5.05089 5.09555 5.11634 5.15400 5.29700 5.50348 5.60473 5.71665 5.83766 6.03708 6.23867 6.28303 6.36711 6.68925 6.82873 7.15538 7.36931 8.90123 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019347 B = 0.003748 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.909950 B = 7468.649270 C = 8516.731426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.219 4.219 3 C 0.167 3.833 4 N -0.554 5.554 5 C 0.071 3.929 6 C -0.116 4.116 7 C 0.105 3.895 8 N -0.604 5.604 9 C 0.509 3.491 10 O -0.583 6.583 11 C -0.128 4.128 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.550 4.550 15 H 0.051 0.949 16 C 0.005 3.995 17 N -0.928 5.928 18 Si 0.962 3.038 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.270 1.270 22 C 0.110 3.890 23 C 0.053 3.947 24 H 0.242 0.758 25 H 0.116 0.884 26 H 0.055 0.945 27 H 0.017 0.983 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.037 0.963 36 H 0.041 0.959 37 H 0.002 0.998 38 H -0.002 1.002 39 H 0.265 0.735 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.745 -21.762 -12.079 25.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.219 4.219 3 C 0.042 3.958 4 N -0.279 5.279 5 C -0.056 4.056 6 C -0.154 4.154 7 C -0.016 4.016 8 N -0.337 5.337 9 C 0.299 3.701 10 O -0.463 6.463 11 C -0.168 4.168 12 C -0.119 4.119 13 C -0.009 4.009 14 C -0.588 4.588 15 H 0.069 0.931 16 C -0.193 4.193 17 N -0.568 5.568 18 Si 0.786 3.214 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.195 1.195 22 C -0.013 4.013 23 C -0.077 4.077 24 H 0.259 0.741 25 H 0.134 0.866 26 H 0.073 0.927 27 H 0.036 0.964 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.125 0.875 34 H 0.115 0.885 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.020 0.980 38 H 0.017 0.983 39 H 0.074 0.926 40 H 0.124 0.876 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 4.131 -21.581 -12.375 25.218 hybrid contribution -0.094 1.163 1.641 2.013 sum 4.037 -20.418 -10.735 23.418 Atomic orbital electron populations 1.25712 0.96862 0.98755 0.99345 1.23219 0.95088 1.01842 1.01799 1.19191 0.84345 0.95403 0.96852 1.58600 1.03726 1.06120 1.59450 1.21588 0.85751 1.01131 0.97151 1.21805 1.02881 0.92296 0.98408 1.21992 0.86319 0.95002 0.98333 1.47958 1.08702 1.30361 1.46648 1.21147 0.90841 0.80080 0.78078 1.90635 1.29888 1.63123 1.62692 1.21718 0.95840 0.98773 1.00470 1.21158 0.97970 0.95532 0.97220 1.18991 0.92950 0.94405 0.94521 1.21648 0.93386 1.15252 1.28529 0.93100 1.25900 0.94869 1.00449 0.98101 1.70056 1.00976 1.41877 1.43919 0.85554 0.77848 0.79076 0.78905 1.19377 1.20216 1.19481 1.21891 0.82720 0.96427 1.00292 1.21855 0.98738 0.90643 0.96495 0.74131 0.86591 0.92679 0.96441 0.88529 0.88022 0.89138 0.90758 0.91650 0.87472 0.88543 0.94443 0.93987 0.97981 0.98330 0.92608 0.87599 0.88851 0.88505 0.97496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.03 18.80 74.32 1.40 -1.63 16 2 C -0.22 -3.98 11.27 31.13 0.35 -3.63 16 3 C 0.17 2.63 5.61 84.50 0.47 3.10 16 4 N -0.55 -9.63 4.03 -922.78 -3.72 -13.35 16 5 C 0.07 1.17 5.28 85.87 0.45 1.63 16 6 C -0.12 -1.63 5.78 30.31 0.18 -1.46 16 7 C 0.10 2.19 6.15 86.45 0.53 2.73 16 8 N -0.60 -15.14 2.18 -817.84 -1.79 -16.93 16 9 C 0.51 17.37 7.63 87.66 0.67 18.04 16 10 O -0.58 -24.69 15.28 -3.04 -0.05 -24.74 16 11 C -0.13 -4.51 4.19 29.85 0.12 -4.38 16 12 C -0.08 -3.71 4.44 30.59 0.14 -3.57 16 13 C 0.03 1.55 4.97 29.85 0.15 1.69 16 14 C -0.55 -32.95 9.11 25.60 0.23 -32.72 16 15 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 16 C 0.00 0.29 5.46 84.66 0.46 0.76 16 17 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 18 Si 0.96 45.60 29.54 68.60 2.03 47.63 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 22 C 0.11 2.16 5.30 87.29 0.46 2.63 16 23 C 0.05 1.08 4.95 87.90 0.43 1.51 16 24 H 0.24 2.27 7.80 -4.41 -0.03 2.23 16 25 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.06 0.89 8.08 -2.39 -0.02 0.87 16 27 H 0.02 0.40 7.32 -2.38 -0.02 0.38 16 28 H 0.10 1.16 7.71 -2.39 -0.02 1.14 16 29 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 1.16 7.98 -2.39 -0.02 1.14 16 31 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.06 1.69 6.99 -2.39 -0.02 1.67 16 33 H 0.11 3.33 7.31 -2.39 -0.02 3.31 16 34 H 0.10 3.17 7.21 -2.38 -0.02 3.15 16 35 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 36 H 0.04 2.00 8.10 -2.39 -0.02 1.99 16 37 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 40 H 0.11 1.69 8.11 -2.39 -0.02 1.67 16 41 H 0.09 1.79 6.24 -2.38 -0.01 1.77 16 42 H 0.10 1.91 5.71 -2.38 -0.01 1.90 16 43 H 0.01 0.18 7.34 -2.39 -0.02 0.16 16 Total: -1.00 -74.02 345.33 3.78 -70.24 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.97 Total: 8.99 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 6.05 Total: -15.30 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -5.22 Total: -86.81 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.05 Total: -24.74 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -74.02 3.78 -70.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628354668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.331 kcal (2) G-P(sol) polarization free energy of solvation -74.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds