Wall clock time and date at job start Tue Mar 31 2020 00:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32874 * 1 3 3 C 1.47125 * 119.99858 * 2 1 4 4 C 1.50701 * 119.99806 * 359.97438 * 3 2 1 5 5 C 1.32861 * 120.00010 * 180.02562 * 3 2 1 6 6 C 1.50699 * 120.00059 * 186.35031 * 5 3 2 7 7 C 1.50696 * 109.47515 * 125.55246 * 6 5 3 8 8 O 1.21277 * 120.00260 * 359.97438 * 7 6 5 9 9 N 1.34781 * 120.00381 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00187 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47158 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.46680 * 295.00379 * 11 10 9 13 13 N 1.46499 * 109.46941 * 54.99975 * 11 10 9 14 14 C 1.36936 * 120.00069 * 205.00412 * 13 11 10 15 15 H 1.08004 * 119.99817 * 359.97438 * 14 13 11 16 16 C 1.38813 * 120.00298 * 180.02562 * 14 13 11 17 17 N 1.31620 * 119.99896 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00165 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47029 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46939 * 120.00041 * 18 16 14 21 21 H 1.48503 * 109.46972 * 239.99812 * 18 16 14 22 22 C 1.52998 * 109.47203 * 175.00161 * 11 10 9 23 23 C 1.53000 * 117.49484 * 248.74611 * 22 11 10 24 24 C 1.53000 * 117.49615 * 180.08805 * 22 11 10 25 25 H 1.07994 * 120.00130 * 0.02562 * 1 2 3 26 26 H 1.07993 * 119.99494 * 180.02562 * 1 2 3 27 27 H 1.07994 * 120.00660 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47023 * 213.95115 * 4 3 2 29 29 H 1.09001 * 109.47345 * 333.95043 * 4 3 2 30 30 H 1.08996 * 109.47200 * 93.95004 * 4 3 2 31 31 H 1.07998 * 120.00157 * 6.07441 * 5 3 2 32 32 H 1.09001 * 109.47303 * 245.55408 * 6 5 3 33 33 H 1.09008 * 109.47042 * 5.54801 * 6 5 3 34 34 H 0.97005 * 119.99614 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.47036 * 299.99638 * 10 9 7 36 36 H 1.08999 * 109.47096 * 59.99771 * 10 9 7 37 37 H 0.97002 * 120.00094 * 25.00063 * 13 11 10 38 38 H 0.97000 * 120.00529 * 180.02562 * 17 16 14 39 39 H 1.09000 * 115.54736 * 34.41324 * 22 11 10 40 40 H 1.09004 * 117.50081 * 0.02562 * 23 22 11 41 41 H 1.09002 * 117.49610 * 145.01630 * 23 22 11 42 42 H 1.09003 * 117.49511 * 214.97837 * 24 22 11 43 43 H 1.08996 * 117.49821 * 359.97438 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2742 0.0000 4 6 1.3108 2.5792 -0.0006 5 6 3.3929 1.2742 -0.0005 6 6 4.1465 2.5713 0.1438 7 6 5.1135 2.4651 1.2947 8 8 5.1837 1.4376 1.9350 9 7 5.8999 3.5124 1.6131 10 6 6.8396 3.4094 2.7322 11 6 7.6047 4.7263 2.8787 12 1 8.2238 4.8868 1.9960 13 7 6.6528 5.8315 3.0150 14 6 7.0206 7.1003 2.6546 15 1 8.0126 7.2863 2.2702 16 6 6.1189 8.1477 2.7843 17 7 4.9101 7.9211 3.2533 18 14 6.6209 9.8787 2.2933 19 1 8.0212 9.8665 1.7991 20 1 5.7213 10.3688 1.2182 21 1 6.5191 10.7766 3.4717 22 6 8.4948 4.6635 4.1215 23 6 8.1222 5.5610 5.3032 24 6 9.3449 5.8939 4.4444 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8688 -0.9352 0.0004 28 1 1.8675 3.3200 -0.5745 29 1 0.3297 2.4321 -0.4522 30 1 1.1900 2.9295 1.0245 31 1 3.9329 0.3442 -0.0999 32 1 4.6961 2.7764 -0.7748 33 1 3.4423 3.3813 0.3344 34 1 5.8435 4.3345 1.1012 35 1 6.2896 3.2042 3.6507 36 1 7.5439 2.5996 2.5418 37 1 5.7619 5.6645 3.3606 38 1 4.2798 8.6528 3.3436 39 1 8.9193 3.6851 4.3467 40 1 7.2428 6.1959 5.1954 41 1 8.3020 5.1733 6.3060 42 1 10.3286 5.7250 4.8825 43 1 9.2703 6.7479 3.7713 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661157772.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:41 Heat of formation + Delta-G solvation = 10.662977 kcal Electronic energy + Delta-G solvation = -21350.359659 eV Core-core repulsion = 18203.610882 eV Total energy + Delta-G solvation = -3146.748777 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.77404 -39.17759 -37.77678 -35.86007 -35.03222 -33.46620 -32.52263 -30.31180 -29.21871 -27.44817 -25.52590 -24.16119 -23.00052 -22.09672 -21.17793 -20.43541 -19.21597 -18.75627 -18.07630 -17.06504 -16.97119 -16.72107 -16.32966 -15.89634 -15.42191 -15.31103 -14.93639 -14.62004 -14.45082 -14.09735 -13.92917 -13.57366 -13.23703 -12.91994 -12.87671 -12.65291 -12.56826 -12.48236 -12.29991 -12.09636 -11.91500 -11.73234 -11.58321 -11.38406 -11.04469 -11.01280 -10.75438 -10.60401 -9.97100 -9.10214 -8.97781 -7.87062 -5.14533 0.44593 1.49422 1.52772 1.59387 1.71097 2.07319 2.47629 2.59970 3.14376 3.48155 3.77094 3.89558 3.92623 4.00277 4.04432 4.28187 4.34184 4.35706 4.44206 4.45751 4.53326 4.59183 4.61406 4.69580 4.79194 4.88430 4.95842 4.97138 5.00179 5.14144 5.19419 5.27248 5.43788 5.49406 5.59060 5.61526 5.68095 5.68691 5.80591 6.05474 6.33104 6.66157 7.31800 7.41710 8.12085 8.37877 9.35472 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016720 B = 0.004029 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.284236 B = 6947.453812 C = 8187.398932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C -0.112 4.112 4 C -0.126 4.126 5 C -0.134 4.134 6 C -0.110 4.110 7 C 0.512 3.488 8 O -0.589 6.589 9 N -0.712 5.712 10 C 0.128 3.872 11 C 0.194 3.806 12 H 0.062 0.938 13 N -0.720 5.720 14 C -0.217 4.217 15 H 0.076 0.924 16 C -0.065 4.065 17 N -0.964 5.964 18 Si 0.956 3.044 19 H -0.268 1.268 20 H -0.298 1.298 21 H -0.304 1.304 22 C -0.169 4.169 23 C -0.174 4.174 24 C -0.169 4.169 25 H 0.108 0.892 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.126 0.874 33 H 0.110 0.890 34 H 0.412 0.588 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.374 0.626 38 H 0.247 0.753 39 H 0.114 0.886 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.755 -11.566 -7.043 13.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.112 4.112 4 C -0.183 4.183 5 C -0.153 4.153 6 C -0.149 4.149 7 C 0.300 3.700 8 O -0.470 6.470 9 N -0.363 5.363 10 C 0.003 3.997 11 C 0.084 3.916 12 H 0.080 0.920 13 N -0.360 5.360 14 C -0.348 4.348 15 H 0.094 0.906 16 C -0.258 4.258 17 N -0.615 5.615 18 Si 0.787 3.213 19 H -0.193 1.193 20 H -0.225 1.225 21 H -0.232 1.232 22 C -0.191 4.191 23 C -0.211 4.211 24 C -0.206 4.206 25 H 0.126 0.874 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.127 0.873 32 H 0.144 0.856 33 H 0.128 0.872 34 H 0.248 0.752 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.206 0.794 38 H 0.056 0.944 39 H 0.132 0.868 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.119 0.881 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.574 -12.126 -6.674 13.930 hybrid contribution -0.175 1.466 0.101 1.479 sum -1.748 -10.660 -6.574 12.645 Atomic orbital electron populations 1.24644 0.95246 1.03164 0.98170 1.21979 0.96025 0.95890 1.01899 1.20815 0.93963 0.95330 1.01107 1.20956 1.00907 0.94079 1.02327 1.22748 0.94230 0.97560 1.00752 1.20782 0.97918 0.98622 0.97624 1.21026 0.80838 0.82599 0.85520 1.90639 1.70071 1.31262 1.55042 1.46003 1.39615 1.16777 1.33917 1.21427 0.91766 0.97628 0.88880 1.20117 0.90095 0.86152 0.95191 0.92049 1.42532 1.13226 1.03506 1.76725 1.19450 0.97214 0.85413 1.32761 0.90593 1.25284 0.96357 1.00733 1.03406 1.69799 1.06329 1.31379 1.53974 0.85330 0.77611 0.81765 0.76588 1.19271 1.22535 1.23194 1.23071 1.02774 0.95138 0.98079 1.22773 0.99860 1.04032 0.94479 1.22844 0.94815 0.99264 1.03690 0.87391 0.86481 0.86657 0.90481 0.90090 0.92041 0.87264 0.85611 0.87167 0.75175 0.93478 0.90453 0.79365 0.94421 0.86836 0.90419 0.89224 0.88075 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.96 14.11 66.64 0.94 -2.02 16 2 C -0.14 -2.91 9.83 23.43 0.23 -2.68 16 3 C -0.11 -2.60 5.98 -18.71 -0.11 -2.71 16 4 C -0.13 -2.57 8.54 71.24 0.61 -1.96 16 5 C -0.13 -3.37 8.45 24.51 0.21 -3.16 16 6 C -0.11 -2.69 5.77 29.10 0.17 -2.52 16 7 C 0.51 16.38 7.82 87.65 0.69 17.07 16 8 O -0.59 -22.97 16.03 -3.02 -0.05 -23.02 16 9 N -0.71 -22.53 5.39 -463.06 -2.49 -25.03 16 10 C 0.13 4.19 5.22 86.38 0.45 4.64 16 11 C 0.19 6.78 2.86 44.99 0.13 6.91 16 12 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 13 N -0.72 -31.43 3.08 -322.93 -0.99 -32.42 16 14 C -0.22 -10.56 8.16 84.03 0.69 -9.87 16 15 H 0.08 3.62 6.91 -2.91 -0.02 3.60 16 16 C -0.07 -3.43 5.50 84.86 0.47 -2.96 16 17 N -0.96 -54.90 13.06 21.65 0.28 -54.62 16 18 Si 0.96 43.60 29.55 68.60 2.03 45.63 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 20 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 21 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 22 C -0.17 -5.52 5.71 -10.79 -0.06 -5.58 16 23 C -0.17 -6.32 9.74 30.62 0.30 -6.02 16 24 C -0.17 -5.64 9.87 30.62 0.30 -5.33 16 25 H 0.11 1.67 6.08 -2.91 -0.02 1.65 16 26 H 0.12 1.52 8.06 -2.91 -0.02 1.50 16 27 H 0.12 2.26 8.06 -2.91 -0.02 2.24 16 28 H 0.08 1.44 6.67 -2.39 -0.02 1.43 16 29 H 0.08 1.36 6.24 -2.39 -0.01 1.34 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.11 2.83 8.05 -2.91 -0.02 2.81 16 32 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.11 2.58 5.79 -2.38 -0.01 2.56 16 34 H 0.41 12.88 8.14 -92.70 -0.75 12.13 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.37 18.35 7.80 -92.71 -0.72 17.63 16 38 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 39 H 0.11 3.13 8.11 -2.39 -0.02 3.11 16 40 H 0.08 3.52 6.68 -2.38 -0.02 3.50 16 41 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 42 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 43 H 0.08 3.03 6.22 -2.39 -0.01 3.02 16 Total: -1.00 -61.33 354.02 3.31 -58.02 By element: Atomic # 1 Polarization: 48.11 SS G_CDS: -0.47 Total: 47.65 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 5.00 Total: -16.21 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -3.21 Total: -112.07 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.05 Total: -23.02 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -61.33 3.31 -58.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661157772.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.688 kcal (2) G-P(sol) polarization free energy of solvation -61.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds