Wall clock time and date at job start Tue Mar 31 2020 00:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32872 * 1 3 3 C 1.47122 * 119.99991 * 2 1 4 4 C 1.50705 * 119.99572 * 5.50009 * 3 2 1 5 5 C 1.32860 * 120.00174 * 185.49661 * 3 2 1 6 6 C 1.50704 * 119.99974 * 6.25333 * 5 3 2 7 7 C 1.50703 * 109.46891 * 126.12620 * 6 5 3 8 8 O 1.21281 * 120.00344 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99577 * 179.72619 * 7 6 5 10 10 C 1.46502 * 120.00024 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47563 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47329 * 295.00995 * 11 10 9 13 13 N 1.46501 * 109.46796 * 55.00474 * 11 10 9 14 14 C 1.36940 * 120.00125 * 204.99963 * 13 11 10 15 15 H 1.08006 * 119.99915 * 0.02562 * 14 13 11 16 16 C 1.38818 * 120.00316 * 179.97438 * 14 13 11 17 17 N 1.31612 * 119.99571 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00094 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46655 * 90.00258 * 18 16 14 20 20 H 1.48495 * 109.47193 * 210.00348 * 18 16 14 21 21 H 1.48494 * 109.47151 * 330.00719 * 18 16 14 22 22 C 1.53002 * 109.47597 * 175.00127 * 11 10 9 23 23 C 1.52993 * 117.50067 * 248.75419 * 22 11 10 24 24 C 1.52996 * 117.50189 * 180.08876 * 22 11 10 25 25 H 1.08004 * 119.99685 * 179.97438 * 1 2 3 26 26 H 1.07992 * 119.99957 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.00128 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47119 * 269.99384 * 4 3 2 29 29 H 1.09001 * 109.47184 * 30.00052 * 4 3 2 30 30 H 1.09001 * 109.46788 * 149.99807 * 4 3 2 31 31 H 1.08005 * 120.00356 * 186.25325 * 5 3 2 32 32 H 1.09000 * 109.47319 * 6.12257 * 6 5 3 33 33 H 1.09002 * 109.47235 * 246.12347 * 6 5 3 34 34 H 0.96998 * 120.00300 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.47385 * 300.00640 * 10 9 7 36 36 H 1.09009 * 109.46743 * 60.00094 * 10 9 7 37 37 H 0.97000 * 120.00334 * 24.99919 * 13 11 10 38 38 H 0.97006 * 120.00041 * 179.97438 * 17 16 14 39 39 H 1.09003 * 115.54291 * 34.41966 * 22 11 10 40 40 H 1.08997 * 117.50112 * 359.97438 * 23 22 11 41 41 H 1.09001 * 117.50287 * 145.02177 * 23 22 11 42 42 H 1.08994 * 117.50004 * 214.97970 * 24 22 11 43 43 H 1.08997 * 117.49582 * 359.97438 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3159 2.5762 0.1251 5 6 3.3883 1.2768 -0.1102 6 6 4.1249 -0.0107 -0.3764 7 6 5.0036 0.1548 -1.5895 8 8 5.0289 1.2138 -2.1801 9 7 5.7652 -0.8725 -2.0151 10 6 6.6189 -0.7119 -3.1947 11 6 7.3725 -2.0166 -3.4605 12 1 8.0556 -2.2163 -2.6350 13 7 6.4143 -3.1185 -3.5787 14 6 6.8093 -4.4014 -3.3079 15 1 7.8272 -4.6009 -3.0068 16 6 5.9012 -5.4455 -3.4194 17 7 4.6608 -5.2023 -3.7859 18 14 6.4403 -7.1955 -3.0507 19 1 6.2214 -7.4879 -1.6113 20 1 5.6462 -8.1420 -3.8745 21 1 7.8818 -7.3478 -3.3730 22 6 8.1676 -1.8905 -4.7616 23 6 7.7092 -2.7322 -5.9541 24 6 8.9927 -3.1001 -5.2054 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8688 -0.9353 -0.0004 28 1 1.0503 2.9394 -0.8676 29 1 0.4092 2.4194 0.7094 30 1 1.9471 3.3115 0.6241 31 1 3.9368 2.2017 -0.0091 32 1 3.4061 -0.8104 -0.5547 33 1 4.7411 -0.2620 0.4870 34 1 5.7474 -1.7185 -1.5409 35 1 6.0021 -0.4656 -4.0590 36 1 7.3347 0.0912 -3.0186 37 1 5.5000 -2.9394 -3.8488 38 1 4.0263 -5.9319 -3.8642 39 1 8.5732 -0.9006 -4.9705 40 1 6.8414 -3.3762 -5.8117 41 1 7.8136 -2.2964 -6.9477 42 1 9.9409 -2.9060 -5.7067 43 1 8.9694 -3.9856 -4.5702 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661157773.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:45 Heat of formation + Delta-G solvation = 27.717685 kcal Electronic energy + Delta-G solvation = -21398.089893 eV Core-core repulsion = 18252.080664 eV Total energy + Delta-G solvation = -3146.009229 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.45066 -37.69984 -36.82156 -34.42832 -33.24909 -32.02084 -30.88730 -29.92063 -28.10693 -25.51388 -23.62492 -22.58672 -21.77163 -21.47007 -20.10730 -19.04455 -17.65699 -17.33037 -16.67216 -15.86889 -15.67139 -15.17426 -14.74484 -14.63839 -14.17475 -13.84353 -13.51186 -13.46974 -12.93271 -12.89275 -12.60660 -12.32378 -12.22193 -11.84584 -11.55098 -11.26982 -11.16995 -10.91132 -10.86031 -10.63467 -10.53052 -10.43955 -10.14293 -9.72792 -9.61669 -9.42734 -9.16873 -9.00365 -8.59281 -8.20582 -7.09307 -5.86329 -3.16427 1.35401 2.98233 3.02505 3.36423 3.43255 3.44419 3.70802 4.47804 4.62709 4.68710 4.85347 5.04162 5.18051 5.37280 5.40092 5.45113 5.48126 5.56628 5.58171 5.60467 5.67057 5.74244 5.74834 5.84477 5.97232 5.98908 6.05581 6.09152 6.37685 6.37989 6.45099 6.47978 6.64815 6.71476 6.75692 6.92253 6.94667 7.00967 7.26915 7.63104 7.97791 8.30847 8.62220 9.43247 9.97245 10.33576 11.35109 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015488 B = 0.004311 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.440706 B = 6493.094729 C = 7865.368709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.123 4.123 3 C -0.116 4.116 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.121 4.121 7 C 0.515 3.485 8 O -0.554 6.554 9 N -0.714 5.714 10 C 0.119 3.881 11 C 0.192 3.808 12 H 0.057 0.943 13 N -0.717 5.717 14 C -0.240 4.240 15 H 0.071 0.929 16 C -0.007 4.007 17 N -0.928 5.928 18 Si 0.902 3.098 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.178 4.178 23 C -0.163 4.163 24 C -0.176 4.176 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.120 0.880 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.410 0.590 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.386 0.614 38 H 0.256 0.744 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.013 10.482 6.875 12.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.140 4.140 3 C -0.116 4.116 4 C -0.169 4.169 5 C -0.130 4.130 6 C -0.161 4.161 7 C 0.301 3.699 8 O -0.433 6.433 9 N -0.365 5.365 10 C -0.005 4.005 11 C 0.081 3.919 12 H 0.075 0.925 13 N -0.359 5.359 14 C -0.371 4.371 15 H 0.089 0.911 16 C -0.204 4.204 17 N -0.576 5.576 18 Si 0.734 3.266 19 H -0.218 1.218 20 H -0.219 1.219 21 H -0.208 1.208 22 C -0.199 4.199 23 C -0.200 4.200 24 C -0.213 4.213 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.138 0.862 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.136 0.864 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.246 0.754 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.221 0.779 38 H 0.065 0.935 39 H 0.103 0.897 40 H 0.136 0.864 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.914 11.056 6.494 12.964 hybrid contribution 0.059 -1.479 0.101 1.484 sum -1.855 9.577 6.595 11.775 Atomic orbital electron populations 1.24392 0.95761 1.01883 1.00397 1.22033 0.95435 0.96484 1.00087 1.20549 0.93900 0.94294 1.02837 1.20759 0.99896 0.94219 1.02035 1.22800 0.93999 0.97790 0.98395 1.20845 0.99396 0.98558 0.97283 1.20429 0.80091 0.83851 0.85568 1.90657 1.66776 1.27425 1.58431 1.45998 1.43928 1.15757 1.30845 1.21556 0.93336 0.98047 0.87579 1.19992 0.91059 0.86936 0.93893 0.92544 1.42474 1.09826 1.02113 1.81482 1.19173 0.95560 0.83718 1.38672 0.91069 1.24704 0.95736 0.97779 1.02183 1.69657 1.03204 1.31183 1.53544 0.86269 0.77624 0.85122 0.77632 1.21782 1.21863 1.20770 1.23070 1.04057 0.94403 0.98409 1.22910 0.99917 1.03661 0.93515 1.22848 0.93869 0.99949 1.04585 0.88149 0.88301 0.86242 0.91388 0.91930 0.91798 0.86409 0.87773 0.88113 0.75370 0.91815 0.91980 0.77929 0.93451 0.89656 0.86355 0.91301 0.91042 0.87943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.95 14.07 28.88 0.41 -1.54 16 2 C -0.12 -1.44 9.20 -37.83 -0.35 -1.79 16 3 C -0.12 -1.39 5.98 -102.87 -0.61 -2.00 16 4 C -0.11 -1.11 9.38 36.01 0.34 -0.77 16 5 C -0.11 -1.42 8.43 -36.16 -0.30 -1.73 16 6 C -0.12 -1.56 5.92 -29.03 -0.17 -1.73 16 7 C 0.51 8.40 7.82 -10.98 -0.09 8.32 16 8 O -0.55 -10.83 16.03 5.56 0.09 -10.74 16 9 N -0.71 -11.62 5.39 -60.29 -0.32 -11.94 16 10 C 0.12 2.03 5.21 -4.04 -0.02 2.01 16 11 C 0.19 3.50 2.86 -67.93 -0.19 3.30 16 12 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 13 N -0.72 -15.75 3.08 -53.42 -0.16 -15.92 16 14 C -0.24 -5.91 8.15 -15.06 -0.12 -6.04 16 15 H 0.07 1.74 6.91 -52.48 -0.36 1.37 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 17 N -0.93 -25.99 13.06 55.49 0.72 -25.27 16 18 Si 0.90 21.11 29.55 -169.99 -5.02 16.09 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.18 -3.10 5.70 -90.62 -0.52 -3.61 16 23 C -0.16 -3.05 9.74 -26.70 -0.26 -3.31 16 24 C -0.18 -3.13 9.87 -26.69 -0.26 -3.39 16 25 H 0.10 0.94 8.06 -52.48 -0.42 0.52 16 26 H 0.10 0.91 6.31 -52.49 -0.33 0.58 16 27 H 0.12 1.37 6.00 -52.48 -0.31 1.06 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.53 6.67 -51.93 -0.35 0.19 16 30 H 0.06 0.57 8.06 -51.93 -0.42 0.15 16 31 H 0.12 1.49 8.04 -52.48 -0.42 1.07 16 32 H 0.10 1.30 5.41 -51.93 -0.28 1.02 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.41 6.63 8.14 -40.82 -0.33 6.29 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.00 8.14 -51.92 -0.42 0.57 16 37 H 0.39 9.37 7.80 -40.82 -0.32 9.06 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.09 1.34 8.11 -51.93 -0.42 0.91 16 40 H 0.12 2.65 6.68 -51.93 -0.35 2.31 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.10 2.04 6.22 -51.93 -0.32 1.72 16 LS Contribution 353.94 15.07 5.33 5.33 Total: -1.00 -28.55 353.94 -8.35 -36.90 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -6.73 Total: 18.12 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -2.26 Total: -12.58 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.24 Total: -53.12 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.55 -8.35 -36.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661157773.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.619 kcal (2) G-P(sol) polarization free energy of solvation -28.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds