Wall clock time and date at job start Tue Mar 31 2020 00:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32872 * 1 3 3 C 1.47122 * 119.99991 * 2 1 4 4 C 1.50705 * 119.99572 * 5.50009 * 3 2 1 5 5 C 1.32860 * 120.00174 * 185.49661 * 3 2 1 6 6 C 1.50704 * 119.99974 * 6.25333 * 5 3 2 7 7 C 1.50703 * 109.46891 * 126.12620 * 6 5 3 8 8 O 1.21281 * 120.00344 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99577 * 179.72619 * 7 6 5 10 10 C 1.46502 * 120.00024 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47563 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47329 * 295.00995 * 11 10 9 13 13 N 1.46501 * 109.46796 * 55.00474 * 11 10 9 14 14 C 1.36940 * 120.00125 * 204.99963 * 13 11 10 15 15 H 1.08006 * 119.99915 * 0.02562 * 14 13 11 16 16 C 1.38818 * 120.00316 * 179.97438 * 14 13 11 17 17 N 1.31612 * 119.99571 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00094 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46655 * 90.00258 * 18 16 14 20 20 H 1.48495 * 109.47193 * 210.00348 * 18 16 14 21 21 H 1.48494 * 109.47151 * 330.00719 * 18 16 14 22 22 C 1.53002 * 109.47597 * 175.00127 * 11 10 9 23 23 C 1.52993 * 117.50067 * 248.75419 * 22 11 10 24 24 C 1.52996 * 117.50189 * 180.08876 * 22 11 10 25 25 H 1.08004 * 119.99685 * 179.97438 * 1 2 3 26 26 H 1.07992 * 119.99957 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.00128 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47119 * 269.99384 * 4 3 2 29 29 H 1.09001 * 109.47184 * 30.00052 * 4 3 2 30 30 H 1.09001 * 109.46788 * 149.99807 * 4 3 2 31 31 H 1.08005 * 120.00356 * 186.25325 * 5 3 2 32 32 H 1.09000 * 109.47319 * 6.12257 * 6 5 3 33 33 H 1.09002 * 109.47235 * 246.12347 * 6 5 3 34 34 H 0.96998 * 120.00300 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.47385 * 300.00640 * 10 9 7 36 36 H 1.09009 * 109.46743 * 60.00094 * 10 9 7 37 37 H 0.97000 * 120.00334 * 24.99919 * 13 11 10 38 38 H 0.97006 * 120.00041 * 179.97438 * 17 16 14 39 39 H 1.09003 * 115.54291 * 34.41966 * 22 11 10 40 40 H 1.08997 * 117.50112 * 359.97438 * 23 22 11 41 41 H 1.09001 * 117.50287 * 145.02177 * 23 22 11 42 42 H 1.08994 * 117.50004 * 214.97970 * 24 22 11 43 43 H 1.08997 * 117.49582 * 359.97438 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3159 2.5762 0.1251 5 6 3.3883 1.2768 -0.1102 6 6 4.1249 -0.0107 -0.3764 7 6 5.0036 0.1548 -1.5895 8 8 5.0289 1.2138 -2.1801 9 7 5.7652 -0.8725 -2.0151 10 6 6.6189 -0.7119 -3.1947 11 6 7.3725 -2.0166 -3.4605 12 1 8.0556 -2.2163 -2.6350 13 7 6.4143 -3.1185 -3.5787 14 6 6.8093 -4.4014 -3.3079 15 1 7.8272 -4.6009 -3.0068 16 6 5.9012 -5.4455 -3.4194 17 7 4.6608 -5.2023 -3.7859 18 14 6.4403 -7.1955 -3.0507 19 1 6.2214 -7.4879 -1.6113 20 1 5.6462 -8.1420 -3.8745 21 1 7.8818 -7.3478 -3.3730 22 6 8.1676 -1.8905 -4.7616 23 6 7.7092 -2.7322 -5.9541 24 6 8.9927 -3.1001 -5.2054 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8688 -0.9353 -0.0004 28 1 1.0503 2.9394 -0.8676 29 1 0.4092 2.4194 0.7094 30 1 1.9471 3.3115 0.6241 31 1 3.9368 2.2017 -0.0091 32 1 3.4061 -0.8104 -0.5547 33 1 4.7411 -0.2620 0.4870 34 1 5.7474 -1.7185 -1.5409 35 1 6.0021 -0.4656 -4.0590 36 1 7.3347 0.0912 -3.0186 37 1 5.5000 -2.9394 -3.8488 38 1 4.0263 -5.9319 -3.8642 39 1 8.5732 -0.9006 -4.9705 40 1 6.8414 -3.3762 -5.8117 41 1 7.8136 -2.2964 -6.9477 42 1 9.9409 -2.9060 -5.7067 43 1 8.9694 -3.9856 -4.5702 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661157773.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:44 Heat of formation + Delta-G solvation = 11.800864 kcal Electronic energy + Delta-G solvation = -21398.780098 eV Core-core repulsion = 18252.080664 eV Total energy + Delta-G solvation = -3146.699434 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.77508 -39.18031 -37.79383 -35.86248 -35.03542 -33.09561 -32.45513 -30.94862 -29.62492 -26.59867 -25.41675 -23.97872 -22.99310 -22.64988 -21.44911 -20.52033 -19.23786 -18.50746 -17.97637 -17.12253 -16.89432 -16.59652 -16.35081 -15.86450 -15.57176 -15.35957 -14.91853 -14.60039 -14.43709 -14.12159 -13.73931 -13.42813 -13.24380 -13.01921 -12.85591 -12.81041 -12.64843 -12.57239 -12.40800 -12.11891 -11.94810 -11.58541 -11.52657 -11.32202 -11.04247 -11.00550 -10.75556 -10.60660 -9.97342 -9.11739 -8.98211 -7.87465 -5.14945 0.45028 1.49826 1.52158 1.58154 1.70829 2.06698 2.47239 2.59636 3.14196 3.47657 3.77158 3.89238 3.91957 4.00368 4.02840 4.23054 4.29841 4.34265 4.43918 4.52983 4.59641 4.60353 4.67800 4.69649 4.81369 4.82257 4.94057 4.95733 4.96923 5.16333 5.19139 5.26948 5.43391 5.49447 5.58208 5.60182 5.67514 5.68604 5.83337 6.05164 6.32534 6.65504 7.31120 7.41167 8.11755 8.37490 9.34920 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015488 B = 0.004311 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.440706 B = 6493.094729 C = 7865.368709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.150 4.150 3 C -0.112 4.112 4 C -0.114 4.114 5 C -0.135 4.135 6 C -0.113 4.113 7 C 0.512 3.488 8 O -0.588 6.588 9 N -0.712 5.712 10 C 0.128 3.872 11 C 0.193 3.807 12 H 0.062 0.938 13 N -0.720 5.720 14 C -0.219 4.219 15 H 0.076 0.924 16 C -0.065 4.065 17 N -0.964 5.964 18 Si 0.956 3.044 19 H -0.289 1.289 20 H -0.305 1.305 21 H -0.274 1.274 22 C -0.169 4.169 23 C -0.174 4.174 24 C -0.169 4.169 25 H 0.110 0.890 26 H 0.112 0.888 27 H 0.117 0.883 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.124 0.876 34 H 0.411 0.589 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.374 0.626 38 H 0.247 0.753 39 H 0.114 0.886 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.278 11.280 7.577 13.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C -0.112 4.112 4 C -0.171 4.171 5 C -0.153 4.153 6 C -0.152 4.152 7 C 0.300 3.700 8 O -0.469 6.469 9 N -0.363 5.363 10 C 0.003 3.997 11 C 0.084 3.916 12 H 0.079 0.921 13 N -0.360 5.360 14 C -0.351 4.351 15 H 0.094 0.906 16 C -0.257 4.257 17 N -0.615 5.615 18 Si 0.787 3.213 19 H -0.217 1.217 20 H -0.233 1.233 21 H -0.199 1.199 22 C -0.190 4.190 23 C -0.211 4.211 24 C -0.206 4.206 25 H 0.128 0.872 26 H 0.131 0.869 27 H 0.134 0.866 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.133 0.867 32 H 0.125 0.875 33 H 0.142 0.858 34 H 0.248 0.752 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.206 0.794 38 H 0.056 0.944 39 H 0.132 0.868 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.119 0.881 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.129 11.864 7.215 13.931 hybrid contribution -0.182 -1.665 -0.129 1.680 sum -1.311 10.199 7.086 12.488 Atomic orbital electron populations 1.24645 0.95372 1.03077 0.97845 1.22133 0.96150 0.96404 1.02135 1.20837 0.93867 0.95298 1.01203 1.20822 1.00496 0.93366 1.02380 1.22788 0.94443 0.97583 1.00501 1.20821 0.99076 0.98920 0.96354 1.21031 0.79811 0.83063 0.86075 1.90634 1.67880 1.28683 1.59720 1.46009 1.43920 1.15876 1.30544 1.21427 0.93284 0.97581 0.87385 1.20121 0.90562 0.86283 0.94630 0.92059 1.42519 1.09878 1.02345 1.81215 1.19426 0.95268 0.84636 1.35727 0.90591 1.25286 0.95974 1.00744 1.03731 1.69796 1.04170 1.31362 1.56179 0.85394 0.77288 0.81570 0.77021 1.21677 1.23269 1.19889 1.23068 1.03343 0.95661 0.96957 1.22771 0.99060 1.04079 0.95218 1.22836 0.94705 0.99100 1.03962 0.87151 0.86946 0.86575 0.91439 0.90423 0.90926 0.86718 0.87501 0.85777 0.75234 0.93480 0.90409 0.79393 0.94421 0.86807 0.90431 0.89193 0.88074 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.28 14.07 66.64 0.94 -2.34 16 2 C -0.15 -3.38 9.20 23.43 0.22 -3.17 16 3 C -0.11 -2.58 5.98 -18.71 -0.11 -2.69 16 4 C -0.11 -2.08 9.38 71.24 0.67 -1.41 16 5 C -0.13 -3.37 8.43 24.51 0.21 -3.16 16 6 C -0.11 -2.82 5.92 29.10 0.17 -2.65 16 7 C 0.51 16.55 7.82 87.66 0.69 17.24 16 8 O -0.59 -22.93 16.03 -3.03 -0.05 -22.98 16 9 N -0.71 -22.82 5.39 -463.06 -2.50 -25.31 16 10 C 0.13 4.22 5.21 86.38 0.45 4.67 16 11 C 0.19 6.81 2.86 44.99 0.13 6.94 16 12 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 13 N -0.72 -31.62 3.08 -322.94 -0.99 -32.61 16 14 C -0.22 -10.73 8.15 84.03 0.69 -10.04 16 15 H 0.08 3.63 6.91 -2.91 -0.02 3.61 16 16 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 17 N -0.96 -55.23 13.06 21.65 0.28 -54.94 16 18 Si 0.96 43.76 29.55 68.60 2.03 45.78 16 19 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.31 -14.53 7.11 99.48 0.71 -13.82 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 C -0.17 -5.53 5.70 -10.80 -0.06 -5.59 16 23 C -0.17 -6.33 9.74 30.62 0.30 -6.04 16 24 C -0.17 -5.67 9.87 30.62 0.30 -5.36 16 25 H 0.11 1.85 8.06 -2.91 -0.02 1.83 16 26 H 0.11 1.80 6.31 -2.91 -0.02 1.78 16 27 H 0.12 2.62 6.00 -2.91 -0.02 2.61 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 1.15 6.67 -2.39 -0.02 1.14 16 30 H 0.07 1.18 8.06 -2.39 -0.02 1.16 16 31 H 0.11 2.88 8.04 -2.91 -0.02 2.86 16 32 H 0.11 2.63 5.41 -2.39 -0.01 2.62 16 33 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.41 13.08 8.14 -92.71 -0.75 12.33 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 37 H 0.37 18.47 7.80 -92.71 -0.72 17.75 16 38 H 0.25 14.04 8.31 -92.70 -0.77 13.27 16 39 H 0.11 3.15 8.11 -2.39 -0.02 3.13 16 40 H 0.08 3.52 6.68 -2.39 -0.02 3.51 16 41 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 42 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.08 3.04 6.22 -2.39 -0.01 3.02 16 Total: -1.00 -61.35 353.94 3.35 -58.00 By element: Atomic # 1 Polarization: 49.08 SS G_CDS: -0.46 Total: 48.62 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 5.04 Total: -16.55 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -3.21 Total: -112.87 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.05 Total: -22.98 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -61.35 3.35 -58.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661157773.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.797 kcal (2) G-P(sol) polarization free energy of solvation -61.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds