Wall clock time and date at job start Tue Mar 31 2020 00:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32995 * 120.00295 * 2 1 4 4 C 1.47098 * 120.00131 * 172.95981 * 3 2 1 5 5 O 1.21613 * 120.00089 * 354.03099 * 4 3 2 6 6 N 1.34781 * 119.99970 * 174.03260 * 4 3 2 7 7 C 1.47021 * 125.64529 * 359.95916 * 6 4 3 8 8 C 1.54323 * 107.26866 * 181.09058 * 7 6 4 9 9 C 1.55161 * 102.93956 * 22.19651 * 8 7 6 10 10 H 1.08998 * 111.03790 * 82.58963 * 9 8 7 11 11 C 1.53010 * 111.00214 * 206.42144 * 9 8 7 12 12 N 1.46495 * 109.47058 * 178.64875 * 11 9 8 13 13 C 1.36934 * 119.99954 * 179.97438 * 12 11 9 14 14 H 1.08000 * 119.99940 * 0.02562 * 13 12 11 15 15 C 1.38817 * 119.99785 * 180.02562 * 13 12 11 16 16 N 1.31616 * 120.00106 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99600 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46897 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.47299 * 299.99275 * 17 15 13 20 20 H 1.48499 * 109.47276 * 59.99926 * 17 15 13 21 21 C 1.47422 * 125.64729 * 179.97438 * 6 4 3 22 22 C 1.50699 * 120.00070 * 180.02562 * 2 1 3 23 23 C 1.53009 * 117.49648 * 1.68886 * 22 2 1 24 24 C 1.53001 * 117.50033 * 293.02990 * 22 2 1 25 25 H 1.09000 * 109.47519 * 89.99856 * 1 2 3 26 26 H 1.09001 * 109.47500 * 210.00337 * 1 2 3 27 27 H 1.09005 * 109.47259 * 329.99759 * 1 2 3 28 28 H 1.08000 * 119.99830 * 352.96349 * 3 2 1 29 29 H 1.08994 * 109.88702 * 300.50875 * 7 6 4 30 30 H 1.09007 * 109.88282 * 61.52467 * 7 6 4 31 31 H 1.09003 * 110.72418 * 263.83092 * 8 7 6 32 32 H 1.09004 * 110.72001 * 140.55528 * 8 7 6 33 33 H 1.08993 * 109.46745 * 58.64657 * 11 9 8 34 34 H 1.09005 * 109.46580 * 298.65004 * 11 9 8 35 35 H 0.97006 * 120.00143 * 0.02562 * 12 11 9 36 36 H 0.96993 * 120.00087 * 0.02562 * 16 15 13 37 37 H 1.08998 * 110.36686 * 37.00113 * 21 6 4 38 38 H 1.09001 * 110.36632 * 274.67564 * 21 6 4 39 39 H 1.08999 * 115.55285 * 147.35149 * 22 2 1 40 40 H 1.08996 * 117.49658 * 359.97438 * 23 22 2 41 41 H 1.08992 * 117.49745 * 145.02018 * 23 22 2 42 42 H 1.08998 * 117.49457 * 214.97806 * 24 22 2 43 43 H 1.09000 * 117.49518 * 359.96976 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6347 1.1565 0.1561 5 8 4.2242 0.1197 0.3936 6 7 4.3214 2.3100 0.0361 7 6 3.7378 3.6289 -0.2489 8 6 4.9023 4.6390 -0.3219 9 6 6.1254 3.7372 -0.6351 10 1 6.1909 3.5232 -1.7018 11 6 7.4205 4.3734 -0.1260 12 7 8.5473 3.4813 -0.4098 13 6 9.8161 3.8429 -0.0432 14 1 9.9861 4.7856 0.4556 15 6 10.8838 2.9977 -0.3126 16 7 10.6766 1.8486 -0.9200 17 14 12.6146 3.4907 0.1882 18 1 13.5678 2.4235 -0.2091 19 1 12.9828 4.7606 -0.4880 20 1 12.6692 3.6797 1.6601 21 6 5.7822 2.4579 0.1685 22 6 2.2605 -1.3051 -0.0006 23 6 1.4388 -2.5952 -0.0412 24 6 2.1539 -2.1829 1.2480 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5139 28 1 1.6381 2.0835 -0.1146 29 1 3.2097 3.6026 -1.2020 30 1 3.0497 3.9100 0.5484 31 1 5.0324 5.1473 0.6335 32 1 4.7386 5.3590 -1.1238 33 1 7.3473 4.5356 0.9493 34 1 7.5778 5.3284 -0.6276 35 1 8.3946 2.6347 -0.8581 36 1 9.7779 1.5925 -1.1797 37 1 6.2913 1.5938 -0.2584 38 1 6.0575 2.5822 1.2158 39 1 3.2126 -1.2980 -0.5311 40 1 0.3533 -2.4999 -0.0670 41 1 1.8506 -3.4368 -0.5979 42 1 3.0359 -2.7536 1.5387 43 1 1.5392 -1.8162 2.0700 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662603194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:34 Heat of formation + Delta-G solvation = 18.230507 kcal Electronic energy + Delta-G solvation = -21441.201843 eV Core-core repulsion = 18294.781219 eV Total energy + Delta-G solvation = -3146.420624 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.11674 -38.46508 -37.09682 -34.86749 -33.56600 -32.31656 -30.31338 -28.96140 -28.00315 -25.37336 -23.71424 -22.94102 -22.41737 -22.11416 -20.33513 -19.78666 -18.21733 -17.36836 -17.00362 -16.37737 -15.74225 -15.30760 -14.58920 -14.47810 -13.92959 -13.77175 -13.68191 -13.49101 -13.31595 -13.20538 -12.79238 -12.53167 -12.45703 -12.16406 -11.84851 -11.66821 -11.44790 -11.02812 -10.90145 -10.82055 -10.67266 -10.52994 -10.47077 -10.37315 -9.94678 -9.45364 -9.13903 -9.06054 -8.86047 -8.44320 -6.98271 -6.06949 -3.07070 1.21413 3.11976 3.30578 3.53844 3.57958 3.75491 3.85882 4.36277 4.45364 4.63563 4.66856 4.76723 4.87366 4.91272 4.96567 4.98406 5.14836 5.23834 5.30031 5.33135 5.45094 5.45945 5.58513 5.58626 5.65373 5.76742 5.83936 5.91175 5.94282 6.00440 6.01057 6.09904 6.16770 6.26356 6.28206 6.39827 6.53736 6.63290 6.76503 7.66979 7.82861 8.32839 8.79060 9.25786 10.12202 10.26768 11.41512 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023763 B = 0.003413 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.037950 B = 8200.815542 C = 9190.224575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.007 4.007 3 C -0.220 4.220 4 C 0.557 3.443 5 O -0.534 6.534 6 N -0.617 5.617 7 C 0.103 3.897 8 C -0.125 4.125 9 C -0.108 4.108 10 H 0.082 0.918 11 C 0.171 3.829 12 N -0.744 5.744 13 C -0.334 4.334 14 H 0.064 0.936 15 C -0.045 4.045 16 N -0.942 5.942 17 Si 1.081 2.919 18 H -0.285 1.285 19 H -0.295 1.295 20 H -0.295 1.295 21 C 0.117 3.883 22 C -0.119 4.119 23 C -0.190 4.190 24 C -0.155 4.155 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.126 0.874 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.023 0.977 34 H 0.025 0.975 35 H 0.367 0.633 36 H 0.255 0.745 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.134 0.866 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.946 -0.284 1.330 23.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.009 4.009 3 C -0.241 4.241 4 C 0.348 3.652 5 O -0.414 6.414 6 N -0.351 5.351 7 C -0.020 4.020 8 C -0.163 4.163 9 C -0.127 4.127 10 H 0.101 0.899 11 C 0.043 3.957 12 N -0.390 5.390 13 C -0.465 4.465 14 H 0.082 0.918 15 C -0.243 4.243 16 N -0.588 5.588 17 Si 0.912 3.088 18 H -0.210 1.210 19 H -0.223 1.223 20 H -0.223 1.223 21 C -0.004 4.004 22 C -0.137 4.137 23 C -0.227 4.227 24 C -0.192 4.192 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.144 0.856 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.040 0.960 34 H 0.042 0.958 35 H 0.201 0.799 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.152 0.848 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.025 -1.157 1.584 22.112 hybrid contribution -1.698 0.533 -0.124 1.784 sum -23.722 -0.624 1.459 23.775 Atomic orbital electron populations 1.20999 0.91165 1.03214 1.02964 1.21807 0.95125 0.93418 0.90533 1.22352 0.93313 0.98514 1.09948 1.18193 0.87531 0.82105 0.77350 1.90772 1.70993 1.30614 1.48978 1.48484 1.08658 1.07280 1.70702 1.22017 0.96632 0.82898 1.00457 1.22648 0.93660 0.97082 1.02946 1.22610 0.95291 0.94452 1.00374 0.89917 1.20520 0.84978 0.93186 0.97034 1.42375 1.03217 1.21013 1.72404 1.20014 0.85398 1.04804 1.36266 0.91763 1.25794 1.03298 0.95197 0.99999 1.70872 1.23184 1.22090 1.42628 0.83235 0.75197 0.74959 0.75449 1.21022 1.22286 1.22270 1.22262 0.78926 0.98720 1.00533 1.21490 1.00640 0.87789 1.03747 1.23144 0.98884 0.98709 1.01965 1.22809 1.02671 1.02515 0.91211 0.90309 0.90778 0.91027 0.85634 0.91634 0.91641 0.90283 0.89977 0.95968 0.95768 0.79946 0.93364 0.90255 0.91194 0.84835 0.88734 0.88624 0.88412 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.89 9.49 36.00 0.34 -0.55 16 2 C -0.01 -0.07 5.80 -101.17 -0.59 -0.66 16 3 C -0.22 -2.58 9.13 -37.81 -0.35 -2.93 16 4 C 0.56 8.72 7.70 -12.66 -0.10 8.62 16 5 O -0.53 -10.17 13.57 5.27 0.07 -10.10 16 6 N -0.62 -9.18 3.33 -171.90 -0.57 -9.76 16 7 C 0.10 1.14 6.07 -3.07 -0.02 1.12 16 8 C -0.12 -1.46 6.42 -24.89 -0.16 -1.62 16 9 C -0.11 -1.73 3.11 -88.45 -0.27 -2.00 16 10 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 11 C 0.17 3.43 5.71 -4.04 -0.02 3.40 16 12 N -0.74 -19.14 5.45 -59.91 -0.33 -19.46 16 13 C -0.33 -9.64 9.99 -15.06 -0.15 -9.79 16 14 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 15 C -0.05 -1.35 5.50 -17.43 -0.10 -1.44 16 16 N -0.94 -29.94 13.70 55.49 0.76 -29.18 16 17 Si 1.08 26.44 29.92 -169.99 -5.09 21.35 16 18 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.30 -6.87 7.11 56.52 0.40 -6.46 16 20 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16 21 C 0.12 2.04 6.08 -2.52 -0.02 2.02 16 22 C -0.12 -1.45 4.34 -91.77 -0.40 -1.85 16 23 C -0.19 -1.79 9.79 -26.69 -0.26 -2.05 16 24 C -0.16 -1.71 10.24 -26.69 -0.27 -1.98 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.46 6.37 -51.93 -0.33 0.13 16 27 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 28 H 0.13 1.13 7.40 -52.49 -0.39 0.74 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.02 0.46 8.10 -51.93 -0.42 0.03 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.37 9.74 6.37 -40.82 -0.26 9.48 16 36 H 0.26 8.03 6.77 -40.82 -0.28 7.75 16 37 H 0.08 1.58 8.04 -51.93 -0.42 1.17 16 38 H 0.07 1.29 8.00 -51.93 -0.42 0.87 16 39 H 0.13 2.03 6.24 -51.93 -0.32 1.71 16 40 H 0.09 0.71 6.31 -51.93 -0.33 0.39 16 41 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 347.48 15.07 5.24 5.24 Total: -1.00 -34.36 347.48 -9.28 -43.65 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -7.01 Total: 7.97 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -2.36 Total: -9.70 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.14 Total: -58.40 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.07 Total: -10.10 kcal Atomic # 14 Polarization: 26.44 SS G_CDS: -5.09 Total: 21.35 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.36 -9.28 -43.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662603194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.878 kcal (2) G-P(sol) polarization free energy of solvation -34.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds