Wall clock time and date at job start Tue Mar 31 2020 00:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32995 * 120.00295 * 2 1 4 4 C 1.47098 * 120.00131 * 172.95981 * 3 2 1 5 5 O 1.21613 * 120.00089 * 354.03099 * 4 3 2 6 6 N 1.34781 * 119.99970 * 174.03260 * 4 3 2 7 7 C 1.47021 * 125.64529 * 359.95916 * 6 4 3 8 8 C 1.54323 * 107.26866 * 181.09058 * 7 6 4 9 9 C 1.55161 * 102.93956 * 22.19651 * 8 7 6 10 10 H 1.08998 * 111.03790 * 82.58963 * 9 8 7 11 11 C 1.53010 * 111.00214 * 206.42144 * 9 8 7 12 12 N 1.46495 * 109.47058 * 178.64875 * 11 9 8 13 13 C 1.36934 * 119.99954 * 179.97438 * 12 11 9 14 14 H 1.08000 * 119.99940 * 0.02562 * 13 12 11 15 15 C 1.38817 * 119.99785 * 180.02562 * 13 12 11 16 16 N 1.31616 * 120.00106 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99600 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46897 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.47299 * 299.99275 * 17 15 13 20 20 H 1.48499 * 109.47276 * 59.99926 * 17 15 13 21 21 C 1.47422 * 125.64729 * 179.97438 * 6 4 3 22 22 C 1.50699 * 120.00070 * 180.02562 * 2 1 3 23 23 C 1.53009 * 117.49648 * 1.68886 * 22 2 1 24 24 C 1.53001 * 117.50033 * 293.02990 * 22 2 1 25 25 H 1.09000 * 109.47519 * 89.99856 * 1 2 3 26 26 H 1.09001 * 109.47500 * 210.00337 * 1 2 3 27 27 H 1.09005 * 109.47259 * 329.99759 * 1 2 3 28 28 H 1.08000 * 119.99830 * 352.96349 * 3 2 1 29 29 H 1.08994 * 109.88702 * 300.50875 * 7 6 4 30 30 H 1.09007 * 109.88282 * 61.52467 * 7 6 4 31 31 H 1.09003 * 110.72418 * 263.83092 * 8 7 6 32 32 H 1.09004 * 110.72001 * 140.55528 * 8 7 6 33 33 H 1.08993 * 109.46745 * 58.64657 * 11 9 8 34 34 H 1.09005 * 109.46580 * 298.65004 * 11 9 8 35 35 H 0.97006 * 120.00143 * 0.02562 * 12 11 9 36 36 H 0.96993 * 120.00087 * 0.02562 * 16 15 13 37 37 H 1.08998 * 110.36686 * 37.00113 * 21 6 4 38 38 H 1.09001 * 110.36632 * 274.67564 * 21 6 4 39 39 H 1.08999 * 115.55285 * 147.35149 * 22 2 1 40 40 H 1.08996 * 117.49658 * 359.97438 * 23 22 2 41 41 H 1.08992 * 117.49745 * 145.02018 * 23 22 2 42 42 H 1.08998 * 117.49457 * 214.97806 * 24 22 2 43 43 H 1.09000 * 117.49518 * 359.96976 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6347 1.1565 0.1561 5 8 4.2242 0.1197 0.3936 6 7 4.3214 2.3100 0.0361 7 6 3.7378 3.6289 -0.2489 8 6 4.9023 4.6390 -0.3219 9 6 6.1254 3.7372 -0.6351 10 1 6.1909 3.5232 -1.7018 11 6 7.4205 4.3734 -0.1260 12 7 8.5473 3.4813 -0.4098 13 6 9.8161 3.8429 -0.0432 14 1 9.9861 4.7856 0.4556 15 6 10.8838 2.9977 -0.3126 16 7 10.6766 1.8486 -0.9200 17 14 12.6146 3.4907 0.1882 18 1 13.5678 2.4235 -0.2091 19 1 12.9828 4.7606 -0.4880 20 1 12.6692 3.6797 1.6601 21 6 5.7822 2.4579 0.1685 22 6 2.2605 -1.3051 -0.0006 23 6 1.4388 -2.5952 -0.0412 24 6 2.1539 -2.1829 1.2480 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5139 28 1 1.6381 2.0835 -0.1146 29 1 3.2097 3.6026 -1.2020 30 1 3.0497 3.9100 0.5484 31 1 5.0324 5.1473 0.6335 32 1 4.7386 5.3590 -1.1238 33 1 7.3473 4.5356 0.9493 34 1 7.5778 5.3284 -0.6276 35 1 8.3946 2.6347 -0.8581 36 1 9.7779 1.5925 -1.1797 37 1 6.2913 1.5938 -0.2584 38 1 6.0575 2.5822 1.2158 39 1 3.2126 -1.2980 -0.5311 40 1 0.3533 -2.4999 -0.0670 41 1 1.8506 -3.4368 -0.5979 42 1 3.0359 -2.7536 1.5387 43 1 1.5392 -1.8162 2.0700 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662603194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:33 Heat of formation + Delta-G solvation = -3.704920 kcal Electronic energy + Delta-G solvation = -21442.153035 eV Core-core repulsion = 18294.781219 eV Total energy + Delta-G solvation = -3147.371815 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.26824 -39.51894 -38.23950 -36.73883 -34.48097 -33.93588 -31.91827 -30.14449 -28.99810 -26.90051 -25.37425 -24.15214 -23.48753 -23.20104 -21.58527 -20.95692 -19.49308 -19.02498 -18.26172 -17.62438 -16.84213 -16.46578 -16.16481 -15.86695 -15.71240 -15.16210 -14.85678 -14.56887 -14.41161 -14.16095 -13.94183 -13.71250 -13.45878 -13.19818 -13.07080 -12.81407 -12.58680 -12.51622 -12.27770 -12.21473 -11.99090 -11.87275 -11.73384 -11.71230 -11.34626 -11.25470 -10.96363 -10.59054 -9.99303 -9.57213 -9.15576 -8.43780 -5.37789 0.30610 1.56131 1.67264 1.83413 1.98750 2.21181 2.69748 3.00248 3.31218 3.38041 3.55116 3.60668 3.74267 3.79467 3.97474 4.00574 4.10845 4.20492 4.24203 4.34805 4.37959 4.47309 4.58471 4.63176 4.70048 4.74435 4.78045 4.80063 4.87967 4.92477 4.99372 5.04074 5.11246 5.15982 5.19985 5.28712 5.33024 5.41282 5.54971 5.64109 6.43790 6.55543 7.04851 7.16286 7.94994 8.06895 9.07817 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023763 B = 0.003413 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.037950 B = 8200.815542 C = 9190.224575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.006 3.994 3 C -0.235 4.235 4 C 0.542 3.458 5 O -0.586 6.586 6 N -0.620 5.620 7 C 0.101 3.899 8 C -0.112 4.112 9 C -0.099 4.099 10 H 0.075 0.925 11 C 0.169 3.831 12 N -0.761 5.761 13 C -0.336 4.336 14 H 0.071 0.929 15 C -0.109 4.109 16 N -0.976 5.976 17 Si 1.131 2.869 18 H -0.294 1.294 19 H -0.273 1.273 20 H -0.277 1.277 21 C 0.122 3.878 22 C -0.148 4.148 23 C -0.161 4.161 24 C -0.165 4.165 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.162 0.838 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.023 0.977 34 H 0.034 0.966 35 H 0.358 0.642 36 H 0.240 0.760 37 H 0.035 0.965 38 H 0.051 0.949 39 H 0.092 0.908 40 H 0.125 0.875 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.101 1.754 1.525 27.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.004 3.996 3 C -0.255 4.255 4 C 0.336 3.664 5 O -0.469 6.469 6 N -0.353 5.353 7 C -0.021 4.021 8 C -0.150 4.150 9 C -0.118 4.118 10 H 0.094 0.906 11 C 0.043 3.957 12 N -0.405 5.405 13 C -0.467 4.467 14 H 0.089 0.911 15 C -0.299 4.299 16 N -0.624 5.624 17 Si 0.955 3.045 18 H -0.220 1.220 19 H -0.199 1.199 20 H -0.203 1.203 21 C -0.001 4.001 22 C -0.166 4.166 23 C -0.198 4.198 24 C -0.202 4.202 25 H 0.115 0.885 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.179 0.821 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.129 0.871 33 H 0.041 0.959 34 H 0.052 0.948 35 H 0.189 0.811 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.110 0.890 40 H 0.143 0.857 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -25.245 0.954 1.782 25.326 hybrid contribution -0.751 -0.143 -0.168 0.783 sum -25.996 0.811 1.615 26.059 Atomic orbital electron populations 1.21096 0.87591 1.04745 1.04470 1.22199 0.97316 0.92042 0.88035 1.22400 0.90492 1.00532 1.12124 1.19088 0.89402 0.81456 0.76463 1.90757 1.72336 1.32450 1.51330 1.48601 1.07311 1.08981 1.70391 1.22319 0.96636 0.80240 1.02888 1.22679 0.90947 0.96878 1.04485 1.22429 0.95470 0.94656 0.99255 0.90636 1.20702 0.85091 0.92793 0.97138 1.42662 1.04025 1.21535 1.72302 1.20436 0.86763 1.04658 1.34882 0.91088 1.27356 1.07601 0.94848 1.00122 1.70996 1.22328 1.23844 1.45211 0.82604 0.70470 0.75173 0.76253 1.22020 1.19859 1.20317 1.21951 0.81063 0.97855 0.99235 1.21401 1.00308 0.90323 1.04554 1.23246 1.00116 0.96729 0.99694 1.22841 1.02810 1.02528 0.92017 0.88510 0.89653 0.89124 0.82089 0.89184 0.88656 0.89381 0.87051 0.95907 0.94777 0.81085 0.94920 0.94584 0.93022 0.89041 0.85706 0.88468 0.90193 0.87774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 9.49 71.23 0.68 -0.53 16 2 C 0.01 0.12 5.80 -17.62 -0.10 0.02 16 3 C -0.24 -5.12 9.13 23.43 0.21 -4.91 16 4 C 0.54 17.48 7.70 86.57 0.67 18.15 16 5 O -0.59 -24.26 13.57 -4.07 -0.06 -24.31 16 6 N -0.62 -18.52 3.33 -816.03 -2.71 -21.23 16 7 C 0.10 1.90 6.07 86.73 0.53 2.43 16 8 C -0.11 -2.28 6.42 31.78 0.20 -2.08 16 9 C -0.10 -3.16 3.11 -9.39 -0.03 -3.19 16 10 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 11 C 0.17 6.82 5.71 86.38 0.49 7.31 16 12 N -0.76 -40.42 5.45 -343.45 -1.87 -42.29 16 13 C -0.34 -19.69 9.99 84.04 0.84 -18.85 16 14 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 15 C -0.11 -6.58 5.50 84.86 0.47 -6.11 16 16 N -0.98 -64.30 13.70 21.65 0.30 -64.00 16 17 Si 1.13 53.59 29.92 68.60 2.05 55.64 16 18 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 C 0.12 4.51 6.08 86.86 0.53 5.04 16 22 C -0.15 -3.66 4.34 -11.54 -0.05 -3.71 16 23 C -0.16 -2.81 9.79 30.62 0.30 -2.51 16 24 C -0.16 -3.67 10.24 30.62 0.31 -3.36 16 25 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.08 0.68 6.37 -2.39 -0.02 0.67 16 27 H 0.09 0.61 8.07 -2.38 -0.02 0.59 16 28 H 0.16 2.25 7.40 -2.91 -0.02 2.23 16 29 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.09 1.68 8.04 -2.39 -0.02 1.66 16 32 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.02 0.93 8.10 -2.39 -0.02 0.91 16 34 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.36 20.14 6.37 -92.70 -0.59 19.55 16 36 H 0.24 16.01 6.77 -92.71 -0.63 15.38 16 37 H 0.04 1.60 8.04 -2.39 -0.02 1.58 16 38 H 0.05 2.04 8.00 -2.39 -0.02 2.02 16 39 H 0.09 3.07 6.24 -2.39 -0.01 3.06 16 40 H 0.12 1.42 6.31 -2.39 -0.02 1.41 16 41 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -80.57 347.48 3.30 -77.27 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 0.54 Total: 31.24 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 5.05 Total: -12.31 kcal Atomic # 7 Polarization: -123.24 SS G_CDS: -4.29 Total: -127.53 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.06 Total: -24.31 kcal Atomic # 14 Polarization: 53.59 SS G_CDS: 2.05 Total: 55.64 kcal Total: -80.57 3.30 -77.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662603194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.565 kcal (2) G-P(sol) polarization free energy of solvation -80.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds