Wall clock time and date at job start Tue Mar 31 2020 00:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32992 * 119.99970 * 2 1 4 4 C 1.47104 * 120.00397 * 172.85009 * 3 2 1 5 5 O 1.21614 * 119.99777 * 354.10942 * 4 3 2 6 6 N 1.34773 * 120.00277 * 174.10726 * 4 3 2 7 7 C 1.47022 * 125.64870 * 0.02787 * 6 4 3 8 8 C 1.54324 * 107.27107 * 178.89981 * 7 6 4 9 9 C 1.55157 * 102.94325 * 337.80763 * 8 7 6 10 10 H 1.09006 * 111.00137 * 277.38965 * 9 8 7 11 11 C 1.52994 * 111.00568 * 153.58019 * 9 8 7 12 12 N 1.46495 * 109.47301 * 175.00327 * 11 9 8 13 13 C 1.36939 * 120.00025 * 179.97438 * 12 11 9 14 14 H 1.07993 * 120.00225 * 359.97438 * 13 12 11 15 15 C 1.38816 * 120.00081 * 179.97438 * 13 12 11 16 16 N 1.31619 * 119.99881 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00227 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46868 * 60.00030 * 17 15 13 19 19 H 1.48497 * 109.47204 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46967 * 300.00080 * 17 15 13 21 21 C 1.47426 * 125.64706 * 179.71057 * 6 4 3 22 22 C 1.50697 * 120.00172 * 180.02562 * 2 1 3 23 23 C 1.53001 * 117.50038 * 1.76940 * 22 2 1 24 24 C 1.53001 * 117.49776 * 293.14513 * 22 2 1 25 25 H 1.09002 * 109.47020 * 90.00713 * 1 2 3 26 26 H 1.08993 * 109.46946 * 329.99979 * 1 2 3 27 27 H 1.09005 * 109.46718 * 210.00168 * 1 2 3 28 28 H 1.08005 * 120.00078 * 352.84394 * 3 2 1 29 29 H 1.08999 * 109.88168 * 298.31683 * 7 6 4 30 30 H 1.09003 * 109.87994 * 59.48131 * 7 6 4 31 31 H 1.08997 * 110.71779 * 96.17175 * 8 7 6 32 32 H 1.09002 * 110.71690 * 219.26810 * 8 7 6 33 33 H 1.09007 * 109.46880 * 294.99468 * 11 9 8 34 34 H 1.08998 * 109.47341 * 54.99408 * 11 9 8 35 35 H 0.96999 * 120.00347 * 359.97438 * 12 11 9 36 36 H 0.96997 * 120.00479 * 180.02562 * 16 15 13 37 37 H 1.08997 * 110.36959 * 323.01179 * 21 6 4 38 38 H 1.09003 * 110.36340 * 85.33461 * 21 6 4 39 39 H 1.08999 * 115.55103 * 147.47816 * 22 2 1 40 40 H 1.08998 * 117.49845 * 0.02562 * 23 22 2 41 41 H 1.08999 * 117.49997 * 145.02618 * 23 22 2 42 42 H 1.09007 * 117.49955 * 214.97783 * 24 22 2 43 43 H 1.08991 * 117.50010 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6344 1.1568 0.1586 5 8 4.2238 0.1200 0.3966 6 7 4.3211 2.3104 0.0400 7 6 3.7377 3.6296 -0.2441 8 6 4.8961 4.6491 -0.2601 9 6 5.9948 3.9399 0.5748 10 1 5.8287 4.0847 1.6424 11 6 7.3889 4.4224 0.1693 12 7 8.3899 3.8234 1.0555 13 6 9.7175 4.1113 0.8823 14 1 10.0266 4.7794 0.0922 15 6 10.6660 3.5441 1.7224 16 7 10.2893 2.7301 2.6856 17 14 12.4770 3.9361 1.4857 18 1 12.6910 5.3977 1.6380 19 1 13.2779 3.2094 2.5033 20 1 12.9017 3.5125 0.1273 21 6 5.7811 2.4595 0.1804 22 6 2.2605 -1.3051 -0.0006 23 6 1.4391 -2.5951 -0.0431 24 6 2.1518 -2.1841 1.2470 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 0.8899 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6382 2.0835 -0.1165 29 1 3.2434 3.6149 -1.2154 30 1 3.0220 3.8938 0.5344 31 1 5.2400 4.8260 -1.2792 32 1 4.5933 5.5843 0.2110 33 1 7.5909 4.1257 -0.8599 34 1 7.4353 5.5084 0.2502 35 1 8.1124 3.2230 1.7650 36 1 10.9520 2.3341 3.2729 37 1 6.1564 1.7999 0.9628 38 1 6.2769 2.2464 -0.7667 39 1 3.2137 -1.2973 -0.5293 40 1 0.3536 -2.4999 -0.0710 41 1 1.8517 -3.4364 -0.5999 42 1 3.0333 -2.7551 1.5387 43 1 1.5349 -1.8187 2.0679 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662603195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:39 Heat of formation + Delta-G solvation = 18.014900 kcal Electronic energy + Delta-G solvation = -21362.355501 eV Core-core repulsion = 18215.925528 eV Total energy + Delta-G solvation = -3146.429973 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.06257 -38.41654 -37.04132 -34.61094 -33.52861 -32.16576 -30.38146 -28.96900 -28.05353 -25.49917 -23.82247 -22.86300 -22.37985 -21.94020 -20.26971 -19.73879 -18.18711 -17.29555 -16.84988 -16.14904 -15.82904 -15.11879 -14.68715 -14.48500 -13.87794 -13.57311 -13.52855 -13.36184 -13.31436 -13.09539 -12.65295 -12.47926 -12.37653 -12.09502 -11.72417 -11.65899 -11.42438 -11.24104 -10.87564 -10.82716 -10.62325 -10.55848 -10.44626 -10.38639 -10.02901 -9.65614 -9.40374 -9.02407 -8.84760 -8.38586 -6.90062 -5.72869 -3.02321 1.25067 3.17986 3.34876 3.46612 3.50640 3.52115 3.88641 4.39830 4.49671 4.61403 4.70867 4.79640 4.90422 4.96459 5.00722 5.03075 5.18319 5.26507 5.36171 5.37345 5.47198 5.52612 5.61011 5.61757 5.67608 5.79807 5.91744 6.00277 6.03297 6.06543 6.12218 6.14549 6.21364 6.34118 6.41038 6.43939 6.59880 6.72699 6.85519 7.71820 7.72892 8.37966 8.45370 9.56396 10.13780 10.48156 11.49776 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024453 B = 0.003331 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.796590 B = 8404.491252 C = 9345.818876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.008 4.008 3 C -0.219 4.219 4 C 0.556 3.444 5 O -0.535 6.535 6 N -0.617 5.617 7 C 0.103 3.897 8 C -0.126 4.126 9 C -0.106 4.106 10 H 0.084 0.916 11 C 0.165 3.835 12 N -0.733 5.733 13 C -0.242 4.242 14 H 0.070 0.930 15 C -0.013 4.013 16 N -0.932 5.932 17 Si 0.908 3.092 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C 0.117 3.883 22 C -0.118 4.118 23 C -0.191 4.191 24 C -0.155 4.155 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.126 0.874 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.022 0.978 34 H 0.024 0.976 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.134 0.866 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.017 -2.698 -6.789 24.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.010 4.010 3 C -0.240 4.240 4 C 0.348 3.652 5 O -0.414 6.414 6 N -0.351 5.351 7 C -0.020 4.020 8 C -0.164 4.164 9 C -0.125 4.125 10 H 0.103 0.897 11 C 0.037 3.963 12 N -0.377 5.377 13 C -0.373 4.373 14 H 0.088 0.912 15 C -0.209 4.209 16 N -0.580 5.580 17 Si 0.739 3.261 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.213 1.213 21 C -0.005 4.005 22 C -0.136 4.136 23 C -0.228 4.228 24 C -0.192 4.192 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.144 0.856 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.039 0.961 34 H 0.042 0.958 35 H 0.218 0.782 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.151 0.849 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.581 -3.250 -6.714 23.781 hybrid contribution 0.945 0.216 0.145 0.980 sum -21.637 -3.034 -6.569 22.815 Atomic orbital electron populations 1.20996 0.91205 1.03224 1.02901 1.21797 0.95101 0.93420 0.90707 1.22366 0.93400 0.98485 1.09774 1.18175 0.87461 0.82203 0.77362 1.90770 1.71017 1.30630 1.48996 1.48489 1.08809 1.07243 1.70523 1.22021 0.96745 0.82932 1.00336 1.22651 0.94612 0.97664 1.01474 1.22546 0.95969 0.93653 1.00371 0.89749 1.20581 0.85855 0.95841 0.93997 1.42368 1.02439 1.55958 1.36977 1.19169 0.83151 1.22857 1.12158 0.91222 1.24754 0.98042 0.99891 0.98233 1.69652 1.32992 1.34784 1.20614 0.86260 0.85187 0.77574 0.77109 1.21287 1.21693 1.21269 1.22258 0.78980 0.97191 1.02093 1.21479 1.00574 0.87764 1.03773 1.23131 0.98900 0.98709 1.02041 1.22801 1.02670 1.02485 0.91221 0.90371 0.91020 0.90802 0.85650 0.91694 0.91685 0.90373 0.90021 0.96066 0.95841 0.78200 0.93426 0.89960 0.91299 0.84856 0.88762 0.88693 0.88394 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.89 9.49 36.01 0.34 -0.55 16 2 C -0.01 -0.09 5.80 -101.17 -0.59 -0.68 16 3 C -0.22 -2.57 9.13 -37.81 -0.35 -2.92 16 4 C 0.56 8.70 7.70 -12.67 -0.10 8.60 16 5 O -0.53 -10.15 13.57 5.26 0.07 -10.08 16 6 N -0.62 -9.15 3.33 -172.05 -0.57 -9.73 16 7 C 0.10 1.13 6.08 -3.06 -0.02 1.11 16 8 C -0.13 -1.46 6.42 -24.90 -0.16 -1.62 16 9 C -0.11 -1.70 3.03 -88.59 -0.27 -1.97 16 10 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 11 C 0.17 3.27 5.72 -4.05 -0.02 3.24 16 12 N -0.73 -18.77 5.55 -59.91 -0.33 -19.10 16 13 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 14 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 15 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 16 N -0.93 -28.79 13.06 55.49 0.72 -28.07 16 17 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 21 C 0.12 2.01 6.32 -2.65 -0.02 1.99 16 22 C -0.12 -1.43 4.35 -91.77 -0.40 -1.83 16 23 C -0.19 -1.78 9.79 -26.73 -0.26 -2.04 16 24 C -0.15 -1.72 10.23 -26.73 -0.27 -1.99 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 27 H 0.07 0.47 6.38 -51.93 -0.33 0.14 16 28 H 0.13 1.14 7.39 -52.48 -0.39 0.75 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 31 H 0.08 0.86 8.04 -51.93 -0.42 0.45 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.02 0.43 7.96 -51.92 -0.41 0.01 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.38 10.44 7.67 -40.82 -0.31 10.13 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.08 1.65 8.04 -51.93 -0.42 1.24 16 38 H 0.07 1.23 7.90 -51.93 -0.41 0.82 16 39 H 0.13 1.99 6.23 -51.93 -0.32 1.66 16 40 H 0.09 0.71 6.31 -51.93 -0.33 0.38 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -33.12 349.33 -9.34 -42.46 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -7.11 Total: 7.68 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -2.36 Total: -6.14 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.18 Total: -56.90 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.07 Total: -10.08 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.12 -9.34 -42.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662603195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.474 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds