Wall clock time and date at job start Tue Mar 31 2020 00:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32992 * 119.99970 * 2 1 4 4 C 1.47104 * 120.00397 * 172.85009 * 3 2 1 5 5 O 1.21614 * 119.99777 * 354.10942 * 4 3 2 6 6 N 1.34773 * 120.00277 * 174.10726 * 4 3 2 7 7 C 1.47022 * 125.64870 * 0.02787 * 6 4 3 8 8 C 1.54324 * 107.27107 * 178.89981 * 7 6 4 9 9 C 1.55157 * 102.94325 * 337.80763 * 8 7 6 10 10 H 1.09006 * 111.00137 * 277.38965 * 9 8 7 11 11 C 1.52994 * 111.00568 * 153.58019 * 9 8 7 12 12 N 1.46495 * 109.47301 * 175.00327 * 11 9 8 13 13 C 1.36939 * 120.00025 * 179.97438 * 12 11 9 14 14 H 1.07993 * 120.00225 * 359.97438 * 13 12 11 15 15 C 1.38816 * 120.00081 * 179.97438 * 13 12 11 16 16 N 1.31619 * 119.99881 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00227 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46868 * 60.00030 * 17 15 13 19 19 H 1.48497 * 109.47204 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46967 * 300.00080 * 17 15 13 21 21 C 1.47426 * 125.64706 * 179.71057 * 6 4 3 22 22 C 1.50697 * 120.00172 * 180.02562 * 2 1 3 23 23 C 1.53001 * 117.50038 * 1.76940 * 22 2 1 24 24 C 1.53001 * 117.49776 * 293.14513 * 22 2 1 25 25 H 1.09002 * 109.47020 * 90.00713 * 1 2 3 26 26 H 1.08993 * 109.46946 * 329.99979 * 1 2 3 27 27 H 1.09005 * 109.46718 * 210.00168 * 1 2 3 28 28 H 1.08005 * 120.00078 * 352.84394 * 3 2 1 29 29 H 1.08999 * 109.88168 * 298.31683 * 7 6 4 30 30 H 1.09003 * 109.87994 * 59.48131 * 7 6 4 31 31 H 1.08997 * 110.71779 * 96.17175 * 8 7 6 32 32 H 1.09002 * 110.71690 * 219.26810 * 8 7 6 33 33 H 1.09007 * 109.46880 * 294.99468 * 11 9 8 34 34 H 1.08998 * 109.47341 * 54.99408 * 11 9 8 35 35 H 0.96999 * 120.00347 * 359.97438 * 12 11 9 36 36 H 0.96997 * 120.00479 * 180.02562 * 16 15 13 37 37 H 1.08997 * 110.36959 * 323.01179 * 21 6 4 38 38 H 1.09003 * 110.36340 * 85.33461 * 21 6 4 39 39 H 1.08999 * 115.55103 * 147.47816 * 22 2 1 40 40 H 1.08998 * 117.49845 * 0.02562 * 23 22 2 41 41 H 1.08999 * 117.49997 * 145.02618 * 23 22 2 42 42 H 1.09007 * 117.49955 * 214.97783 * 24 22 2 43 43 H 1.08991 * 117.50010 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6344 1.1568 0.1586 5 8 4.2238 0.1200 0.3966 6 7 4.3211 2.3104 0.0400 7 6 3.7377 3.6296 -0.2441 8 6 4.8961 4.6491 -0.2601 9 6 5.9948 3.9399 0.5748 10 1 5.8287 4.0847 1.6424 11 6 7.3889 4.4224 0.1693 12 7 8.3899 3.8234 1.0555 13 6 9.7175 4.1113 0.8823 14 1 10.0266 4.7794 0.0922 15 6 10.6660 3.5441 1.7224 16 7 10.2893 2.7301 2.6856 17 14 12.4770 3.9361 1.4857 18 1 12.6910 5.3977 1.6380 19 1 13.2779 3.2094 2.5033 20 1 12.9017 3.5125 0.1273 21 6 5.7811 2.4595 0.1804 22 6 2.2605 -1.3051 -0.0006 23 6 1.4391 -2.5951 -0.0431 24 6 2.1518 -2.1841 1.2470 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 0.8899 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6382 2.0835 -0.1165 29 1 3.2434 3.6149 -1.2154 30 1 3.0220 3.8938 0.5344 31 1 5.2400 4.8260 -1.2792 32 1 4.5933 5.5843 0.2110 33 1 7.5909 4.1257 -0.8599 34 1 7.4353 5.5084 0.2502 35 1 8.1124 3.2230 1.7650 36 1 10.9520 2.3341 3.2729 37 1 6.1564 1.7999 0.9628 38 1 6.2769 2.2464 -0.7667 39 1 3.2137 -1.2973 -0.5293 40 1 0.3536 -2.4999 -0.0710 41 1 1.8517 -3.4364 -0.5999 42 1 3.0333 -2.7551 1.5387 43 1 1.5349 -1.8187 2.0679 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662603195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:37 Heat of formation + Delta-G solvation = -2.865952 kcal Electronic energy + Delta-G solvation = -21363.260963 eV Core-core repulsion = 18215.925528 eV Total energy + Delta-G solvation = -3147.335435 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.20585 -39.45285 -38.17423 -36.42411 -34.42434 -33.83341 -32.00915 -30.14373 -29.02305 -27.05338 -25.31450 -24.01490 -23.37170 -23.16098 -21.52339 -20.90142 -19.34648 -18.92715 -18.16654 -17.37455 -16.87388 -16.56089 -16.09532 -15.78329 -15.32498 -15.13530 -14.67530 -14.55512 -14.33686 -14.06917 -13.84373 -13.67909 -13.46391 -13.12570 -13.11633 -12.93244 -12.71764 -12.48943 -12.30309 -12.20760 -12.12956 -11.87555 -11.70436 -11.63184 -11.60090 -11.31423 -10.94804 -10.54099 -9.95145 -9.51358 -9.02145 -7.96010 -5.25889 0.34510 1.45510 1.49606 1.55673 2.05571 2.25734 2.55112 3.03311 3.36194 3.43810 3.60829 3.67588 3.82693 3.87917 4.01781 4.11839 4.18611 4.24542 4.31662 4.41046 4.46301 4.58351 4.65469 4.69734 4.73346 4.82391 4.83305 4.86857 4.94738 4.97506 5.06849 5.09312 5.18557 5.21816 5.23634 5.34087 5.40783 5.45142 5.48514 5.67597 6.25320 6.61556 7.21772 7.31071 8.07362 8.29273 9.27604 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024453 B = 0.003331 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.796590 B = 8404.491252 C = 9345.818876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.004 3.996 3 C -0.234 4.234 4 C 0.542 3.458 5 O -0.586 6.586 6 N -0.620 5.620 7 C 0.100 3.900 8 C -0.112 4.112 9 C -0.097 4.097 10 H 0.074 0.926 11 C 0.164 3.836 12 N -0.749 5.749 13 C -0.247 4.247 14 H 0.080 0.920 15 C -0.080 4.080 16 N -0.973 5.973 17 Si 0.977 3.023 18 H -0.273 1.273 19 H -0.297 1.297 20 H -0.278 1.278 21 C 0.121 3.879 22 C -0.146 4.146 23 C -0.160 4.160 24 C -0.168 4.168 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.161 0.839 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.023 0.977 34 H 0.037 0.963 35 H 0.371 0.629 36 H 0.251 0.749 37 H 0.037 0.963 38 H 0.054 0.946 39 H 0.094 0.906 40 H 0.124 0.876 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.964 -1.031 -8.171 27.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.002 3.998 3 C -0.255 4.255 4 C 0.336 3.664 5 O -0.469 6.469 6 N -0.352 5.352 7 C -0.021 4.021 8 C -0.150 4.150 9 C -0.117 4.117 10 H 0.092 0.908 11 C 0.037 3.963 12 N -0.392 5.392 13 C -0.379 4.379 14 H 0.098 0.902 15 C -0.272 4.272 16 N -0.623 5.623 17 Si 0.806 3.194 18 H -0.199 1.199 19 H -0.223 1.223 20 H -0.204 1.204 21 C -0.002 4.002 22 C -0.164 4.164 23 C -0.197 4.197 24 C -0.205 4.205 25 H 0.116 0.884 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.178 0.822 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.128 0.872 33 H 0.041 0.959 34 H 0.054 0.946 35 H 0.202 0.798 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.142 0.858 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -25.569 -1.520 -8.145 26.878 hybrid contribution 1.838 -0.361 0.526 1.945 sum -23.732 -1.881 -7.619 24.996 Atomic orbital electron populations 1.21091 0.87701 1.04639 1.04473 1.22190 0.97264 0.92100 0.88200 1.22408 0.90629 1.00473 1.11967 1.19055 0.89310 0.81570 0.76487 1.90753 1.72349 1.32457 1.51329 1.48605 1.07538 1.08894 1.70207 1.22317 0.96727 0.80280 1.02784 1.22674 0.92674 0.98459 1.01239 1.22364 0.95526 0.93230 1.00588 0.90798 1.20765 0.86543 0.96056 0.92887 1.42643 1.02930 1.56065 1.37536 1.19649 0.84533 1.21999 1.11689 0.90230 1.25652 1.02670 1.00408 0.98421 1.69836 1.34083 1.36519 1.21909 0.85156 0.79594 0.77740 0.76945 1.19919 1.22323 1.20396 1.21957 0.81142 0.97352 0.99742 1.21400 1.00340 0.90212 1.04417 1.23231 1.00093 0.96793 0.99583 1.22829 1.02848 1.02709 0.92085 0.88417 0.89277 0.89750 0.82194 0.88804 0.89263 0.89310 0.87227 0.95886 0.94552 0.79774 0.94069 0.94445 0.92737 0.88765 0.85810 0.88339 0.90185 0.88017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 9.49 71.24 0.68 -0.55 16 2 C 0.00 0.09 5.80 -17.62 -0.10 -0.02 16 3 C -0.23 -5.11 9.13 23.43 0.21 -4.90 16 4 C 0.54 17.42 7.70 86.57 0.67 18.09 16 5 O -0.59 -24.13 13.57 -4.08 -0.06 -24.18 16 6 N -0.62 -18.44 3.33 -816.49 -2.72 -21.15 16 7 C 0.10 1.90 6.08 86.73 0.53 2.43 16 8 C -0.11 -2.29 6.42 31.78 0.20 -2.08 16 9 C -0.10 -3.12 3.03 -9.48 -0.03 -3.15 16 10 H 0.07 2.53 8.14 -2.38 -0.02 2.52 16 11 C 0.16 6.49 5.72 86.38 0.49 6.98 16 12 N -0.75 -39.50 5.55 -343.46 -1.90 -41.41 16 13 C -0.25 -14.19 9.99 84.03 0.84 -13.35 16 14 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 15 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 16 N -0.97 -62.22 13.06 21.65 0.28 -61.94 16 17 Si 0.98 47.40 29.55 68.60 2.03 49.43 16 18 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 19 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 21 C 0.12 4.43 6.32 86.78 0.55 4.97 16 22 C -0.15 -3.56 4.35 -11.54 -0.05 -3.61 16 23 C -0.16 -2.75 9.79 30.60 0.30 -2.45 16 24 C -0.17 -3.78 10.23 30.60 0.31 -3.46 16 25 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.09 0.64 8.07 -2.39 -0.02 0.62 16 27 H 0.08 0.70 6.38 -2.38 -0.02 0.68 16 28 H 0.16 2.27 7.39 -2.91 -0.02 2.24 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 1.32 8.13 -2.39 -0.02 1.30 16 31 H 0.09 1.66 8.04 -2.39 -0.02 1.64 16 32 H 0.11 1.69 8.14 -2.39 -0.02 1.68 16 33 H 0.02 0.92 7.96 -2.38 -0.02 0.90 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.37 21.24 7.67 -92.71 -0.71 20.53 16 36 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 37 H 0.04 1.66 8.04 -2.39 -0.02 1.64 16 38 H 0.05 2.09 7.90 -2.39 -0.02 2.07 16 39 H 0.09 3.08 6.23 -2.39 -0.01 3.06 16 40 H 0.12 1.40 6.31 -2.39 -0.02 1.38 16 41 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.08 2.03 8.14 -2.38 -0.02 2.02 16 43 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -77.31 349.33 2.98 -74.33 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: 0.28 Total: 30.28 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 5.07 Total: -5.36 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -4.34 Total: -124.50 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.06 Total: -24.18 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -77.31 2.98 -74.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662603195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.469 kcal (2) G-P(sol) polarization free energy of solvation -77.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds