Wall clock time and date at job start Tue Mar 31 2020 00:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32995 * 119.99839 * 2 1 4 4 C 1.47102 * 119.99984 * 353.10254 * 3 2 1 5 5 O 1.21613 * 119.99987 * 353.76932 * 4 3 2 6 6 N 1.34782 * 119.99925 * 173.77223 * 4 3 2 7 7 C 1.46499 * 120.00099 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.47063 * 179.97438 * 7 6 4 9 9 H 1.09000 * 110.91389 * 57.44779 * 8 7 6 10 10 C 1.55158 * 111.00017 * 181.34712 * 8 7 6 11 11 C 1.54324 * 102.93725 * 153.57672 * 10 8 7 12 12 N 1.47025 * 107.27479 * 337.80687 * 11 10 8 13 13 C 1.36934 * 125.64794 * 179.20842 * 12 11 10 14 14 H 1.08003 * 119.99726 * 179.69322 * 13 12 11 15 15 C 1.38812 * 120.00244 * 359.68784 * 13 12 11 16 16 N 1.31624 * 119.99945 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00235 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47290 * 89.99899 * 17 15 13 19 19 H 1.48497 * 109.47455 * 209.99980 * 17 15 13 20 20 H 1.48501 * 109.46773 * 329.99952 * 17 15 13 21 21 C 1.47422 * 108.69814 * 358.93999 * 12 11 10 22 22 C 1.50697 * 120.00289 * 179.97438 * 2 1 3 23 23 C 1.53008 * 117.49629 * 8.74736 * 22 2 1 24 24 C 1.53000 * 117.49777 * 300.09152 * 22 2 1 25 25 H 1.08999 * 109.46839 * 84.53455 * 1 2 3 26 26 H 1.09000 * 109.47021 * 204.53420 * 1 2 3 27 27 H 1.09000 * 109.46861 * 324.53639 * 1 2 3 28 28 H 1.07999 * 120.00128 * 173.10337 * 3 2 1 29 29 H 0.97002 * 119.99860 * 359.97438 * 6 4 3 30 30 H 1.08999 * 109.46745 * 59.99455 * 7 6 4 31 31 H 1.09005 * 109.46622 * 299.99910 * 7 6 4 32 32 H 1.09000 * 110.72182 * 271.93515 * 10 8 7 33 33 H 1.08999 * 110.72119 * 35.03624 * 10 8 7 34 34 H 1.09004 * 109.88228 * 218.38710 * 11 10 8 35 35 H 1.09000 * 109.88551 * 97.22739 * 11 10 8 36 36 H 0.96998 * 119.99777 * 179.97438 * 16 15 13 37 37 H 1.09009 * 110.36346 * 142.97049 * 21 12 11 38 38 H 1.08995 * 110.37048 * 265.17942 * 21 12 11 39 39 H 1.08995 * 115.55317 * 154.41536 * 22 2 1 40 40 H 1.08998 * 117.49814 * 359.97438 * 23 22 2 41 41 H 1.09004 * 117.49615 * 145.02124 * 23 22 2 42 42 H 1.09001 * 117.49599 * 214.97487 * 24 22 2 43 43 H 1.08998 * 117.50128 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4444 2.4211 -0.1530 5 8 0.2521 2.4135 -0.3926 6 7 2.0992 3.5925 -0.0277 7 6 1.3745 4.8566 -0.1795 8 6 2.3433 6.0257 0.0094 9 1 3.1688 5.9654 -0.6998 10 6 1.6047 7.3849 -0.1109 11 6 2.4799 8.3301 0.7390 12 7 3.2434 7.4933 1.6763 13 6 4.1502 7.9484 2.5958 14 1 4.6576 7.2502 3.2451 15 6 4.4175 9.3071 2.6934 16 7 3.7995 10.1579 1.9017 17 14 5.6551 9.9279 3.9473 18 1 7.0074 9.9587 3.3347 19 1 5.2766 11.2969 4.3806 20 1 5.6650 9.0214 5.1236 21 6 2.8661 6.0837 1.4665 22 6 2.2606 -1.3050 0.0006 23 6 1.4521 -2.5877 -0.2052 24 6 2.0245 -2.2565 1.1753 25 1 -0.3633 0.0979 -1.0230 26 1 -0.3633 -0.9349 0.4267 27 1 -0.3633 0.8370 0.5962 28 1 3.2461 1.1552 0.1123 29 1 3.0501 3.5985 0.1637 30 1 0.5848 4.9148 0.5695 31 1 0.9348 4.9059 -1.1757 32 1 1.5743 7.7167 -1.1487 33 1 0.5975 7.3142 0.2997 34 1 1.8469 9.0238 1.2924 35 1 3.1633 8.8826 0.0941 36 1 3.9860 11.1073 1.9702 37 1 3.7356 5.4368 1.5836 38 1 2.0812 5.7930 2.1647 39 1 3.2637 -1.2689 -0.4241 40 1 0.3752 -2.4875 -0.3406 41 1 1.9237 -3.3954 -0.7650 42 1 2.8724 -2.8466 1.5231 43 1 1.3246 -1.9384 1.9478 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663566735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:43 Heat of formation + Delta-G solvation = 22.631240 kcal Electronic energy + Delta-G solvation = -21109.097072 eV Core-core repulsion = 17962.867278 eV Total energy + Delta-G solvation = -3146.229794 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.88385 -38.28332 -37.53623 -34.68084 -33.26145 -32.47896 -29.91727 -28.59363 -27.54708 -25.62155 -24.35868 -23.07325 -22.70950 -20.71278 -19.91201 -19.80205 -18.59197 -17.06808 -16.66937 -16.47520 -15.61376 -15.14887 -14.97740 -14.61098 -14.35434 -13.74098 -13.49196 -13.32521 -13.09169 -12.77564 -12.32095 -12.17419 -11.96541 -11.82151 -11.69269 -11.53229 -11.35433 -11.20200 -10.89718 -10.79105 -10.78212 -10.36099 -10.12924 -9.95627 -9.85416 -9.64733 -9.47796 -9.18283 -8.73903 -8.59631 -6.82593 -5.70848 -3.04363 1.22348 3.26458 3.34798 3.39903 3.44811 3.46986 3.61287 4.29379 4.49711 4.50110 4.57740 4.72716 4.90906 5.08467 5.19944 5.25452 5.27516 5.42663 5.45252 5.51775 5.55617 5.65521 5.70514 5.72882 5.77291 5.91949 5.95721 6.07878 6.09172 6.35275 6.36000 6.39935 6.50417 6.55364 6.56259 6.72654 6.93382 7.56454 7.64311 7.67853 7.83287 8.26705 8.36167 9.22649 9.83088 10.49383 11.40962 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028639 B = 0.002941 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.446073 B = 9519.119996 C =10301.692326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.005 4.005 3 C -0.224 4.224 4 C 0.543 3.457 5 O -0.547 6.547 6 N -0.721 5.721 7 C 0.134 3.866 8 C -0.118 4.118 9 H 0.079 0.921 10 C -0.135 4.135 11 C 0.177 3.823 12 N -0.607 5.607 13 C -0.228 4.228 14 H 0.077 0.923 15 C -0.009 4.009 16 N -0.922 5.922 17 Si 0.912 3.088 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.143 3.857 22 C -0.133 4.133 23 C -0.173 4.173 24 C -0.167 4.167 25 H 0.079 0.921 26 H 0.053 0.947 27 H 0.092 0.908 28 H 0.126 0.874 29 H 0.402 0.598 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.252 0.748 37 H 0.035 0.965 38 H 0.019 0.981 39 H 0.116 0.884 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.827 -21.723 -5.492 22.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.007 4.007 3 C -0.245 4.245 4 C 0.332 3.668 5 O -0.428 6.428 6 N -0.371 5.371 7 C 0.010 3.990 8 C -0.137 4.137 9 H 0.097 0.903 10 C -0.174 4.174 11 C 0.053 3.947 12 N -0.333 5.333 13 C -0.357 4.357 14 H 0.095 0.905 15 C -0.206 4.206 16 N -0.570 5.570 17 Si 0.743 3.257 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.016 3.984 22 C -0.151 4.151 23 C -0.210 4.210 24 C -0.204 4.204 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.110 0.890 28 H 0.144 0.856 29 H 0.236 0.764 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.037 0.963 39 H 0.134 0.866 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.585 -21.467 -5.582 22.650 hybrid contribution 1.339 0.507 0.737 1.610 sum -3.246 -20.960 -4.846 21.757 Atomic orbital electron populations 1.21165 0.90820 1.02356 1.03692 1.21750 0.96128 0.92276 0.90545 1.22325 1.00377 0.91937 1.09895 1.18484 0.86910 0.84257 0.77126 1.90740 1.15106 1.87748 1.49200 1.45982 1.13125 1.05817 1.72223 1.21367 0.94736 0.81484 1.01417 1.22609 0.97804 0.93903 0.99433 0.90264 1.22859 0.99149 0.94934 1.00440 1.21147 0.92381 0.90730 0.90486 1.44489 1.47440 0.99997 1.41380 1.19055 1.14628 0.91314 1.10674 0.90497 1.24812 1.00203 0.95901 0.99635 1.69970 1.44921 1.01735 1.40358 0.86114 0.80795 0.78107 0.80717 1.21620 1.21672 1.20711 1.21555 0.96533 0.88222 0.92066 1.21287 1.00171 0.88799 1.04835 1.23081 1.00503 0.97676 0.99709 1.23000 1.03725 1.01961 0.91696 0.90279 0.92803 0.88970 0.85612 0.76387 0.91476 0.91781 0.92011 0.92225 0.93935 0.93540 0.93760 0.94693 0.96346 0.86615 0.87992 0.88318 0.88217 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 7.91 36.01 0.28 -1.04 16 2 C -0.01 -0.05 5.81 -101.17 -0.59 -0.64 16 3 C -0.22 -2.48 9.67 -37.81 -0.37 -2.84 16 4 C 0.54 7.54 7.61 -12.66 -0.10 7.45 16 5 O -0.55 -9.09 13.28 5.27 0.07 -9.02 16 6 N -0.72 -9.58 5.40 -61.49 -0.33 -9.91 16 7 C 0.13 1.98 5.12 -4.04 -0.02 1.96 16 8 C -0.12 -1.98 3.10 -88.47 -0.27 -2.25 16 9 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 10 C -0.13 -2.49 6.42 -24.90 -0.16 -2.65 16 11 C 0.18 4.32 5.37 -3.06 -0.02 4.30 16 12 N -0.61 -15.53 3.39 -170.07 -0.58 -16.11 16 13 C -0.23 -6.39 10.28 -15.06 -0.15 -6.55 16 14 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 15 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 16 N -0.92 -27.27 10.31 55.49 0.57 -26.70 16 17 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.14 2.89 6.40 -2.53 -0.02 2.87 16 22 C -0.13 -1.04 6.01 -91.77 -0.55 -1.59 16 23 C -0.17 -1.13 9.77 -26.69 -0.26 -1.39 16 24 C -0.17 -1.12 10.10 -26.69 -0.27 -1.39 16 25 H 0.08 0.89 8.05 -51.93 -0.42 0.47 16 26 H 0.05 0.46 6.31 -51.93 -0.33 0.13 16 27 H 0.09 1.20 6.12 -51.93 -0.32 0.88 16 28 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.40 4.64 8.32 -40.82 -0.34 4.30 16 30 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16 34 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 35 H 0.05 1.25 7.38 -51.93 -0.38 0.86 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.02 0.39 8.01 -51.93 -0.42 -0.03 16 39 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.10 0.66 6.42 -51.93 -0.33 0.33 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 345.90 15.07 5.21 5.21 Total: -1.00 -31.96 345.90 -9.78 -41.74 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.11 Total: 1.79 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -2.58 Total: -4.14 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.34 Total: -52.73 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.07 Total: -9.02 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.96 -9.78 -41.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663566735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.369 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds