Wall clock time and date at job start Tue Mar 31 2020 00:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32995 * 119.99839 * 2 1 4 4 C 1.47102 * 119.99984 * 353.10254 * 3 2 1 5 5 O 1.21613 * 119.99987 * 353.76932 * 4 3 2 6 6 N 1.34782 * 119.99925 * 173.77223 * 4 3 2 7 7 C 1.46499 * 120.00099 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.47063 * 179.97438 * 7 6 4 9 9 H 1.09000 * 110.91389 * 57.44779 * 8 7 6 10 10 C 1.55158 * 111.00017 * 181.34712 * 8 7 6 11 11 C 1.54324 * 102.93725 * 153.57672 * 10 8 7 12 12 N 1.47025 * 107.27479 * 337.80687 * 11 10 8 13 13 C 1.36934 * 125.64794 * 179.20842 * 12 11 10 14 14 H 1.08003 * 119.99726 * 179.69322 * 13 12 11 15 15 C 1.38812 * 120.00244 * 359.68784 * 13 12 11 16 16 N 1.31624 * 119.99945 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00235 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47290 * 89.99899 * 17 15 13 19 19 H 1.48497 * 109.47455 * 209.99980 * 17 15 13 20 20 H 1.48501 * 109.46773 * 329.99952 * 17 15 13 21 21 C 1.47422 * 108.69814 * 358.93999 * 12 11 10 22 22 C 1.50697 * 120.00289 * 179.97438 * 2 1 3 23 23 C 1.53008 * 117.49629 * 8.74736 * 22 2 1 24 24 C 1.53000 * 117.49777 * 300.09152 * 22 2 1 25 25 H 1.08999 * 109.46839 * 84.53455 * 1 2 3 26 26 H 1.09000 * 109.47021 * 204.53420 * 1 2 3 27 27 H 1.09000 * 109.46861 * 324.53639 * 1 2 3 28 28 H 1.07999 * 120.00128 * 173.10337 * 3 2 1 29 29 H 0.97002 * 119.99860 * 359.97438 * 6 4 3 30 30 H 1.08999 * 109.46745 * 59.99455 * 7 6 4 31 31 H 1.09005 * 109.46622 * 299.99910 * 7 6 4 32 32 H 1.09000 * 110.72182 * 271.93515 * 10 8 7 33 33 H 1.08999 * 110.72119 * 35.03624 * 10 8 7 34 34 H 1.09004 * 109.88228 * 218.38710 * 11 10 8 35 35 H 1.09000 * 109.88551 * 97.22739 * 11 10 8 36 36 H 0.96998 * 119.99777 * 179.97438 * 16 15 13 37 37 H 1.09009 * 110.36346 * 142.97049 * 21 12 11 38 38 H 1.08995 * 110.37048 * 265.17942 * 21 12 11 39 39 H 1.08995 * 115.55317 * 154.41536 * 22 2 1 40 40 H 1.08998 * 117.49814 * 359.97438 * 23 22 2 41 41 H 1.09004 * 117.49615 * 145.02124 * 23 22 2 42 42 H 1.09001 * 117.49599 * 214.97487 * 24 22 2 43 43 H 1.08998 * 117.50128 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4444 2.4211 -0.1530 5 8 0.2521 2.4135 -0.3926 6 7 2.0992 3.5925 -0.0277 7 6 1.3745 4.8566 -0.1795 8 6 2.3433 6.0257 0.0094 9 1 3.1688 5.9654 -0.6998 10 6 1.6047 7.3849 -0.1109 11 6 2.4799 8.3301 0.7390 12 7 3.2434 7.4933 1.6763 13 6 4.1502 7.9484 2.5958 14 1 4.6576 7.2502 3.2451 15 6 4.4175 9.3071 2.6934 16 7 3.7995 10.1579 1.9017 17 14 5.6551 9.9279 3.9473 18 1 7.0074 9.9587 3.3347 19 1 5.2766 11.2969 4.3806 20 1 5.6650 9.0214 5.1236 21 6 2.8661 6.0837 1.4665 22 6 2.2606 -1.3050 0.0006 23 6 1.4521 -2.5877 -0.2052 24 6 2.0245 -2.2565 1.1753 25 1 -0.3633 0.0979 -1.0230 26 1 -0.3633 -0.9349 0.4267 27 1 -0.3633 0.8370 0.5962 28 1 3.2461 1.1552 0.1123 29 1 3.0501 3.5985 0.1637 30 1 0.5848 4.9148 0.5695 31 1 0.9348 4.9059 -1.1757 32 1 1.5743 7.7167 -1.1487 33 1 0.5975 7.3142 0.2997 34 1 1.8469 9.0238 1.2924 35 1 3.1633 8.8826 0.0941 36 1 3.9860 11.1073 1.9702 37 1 3.7356 5.4368 1.5836 38 1 2.0812 5.7930 2.1647 39 1 3.2637 -1.2689 -0.4241 40 1 0.3752 -2.4875 -0.3406 41 1 1.9237 -3.3954 -0.7650 42 1 2.8724 -2.8466 1.5231 43 1 1.3246 -1.9384 1.9478 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663566735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:42 Heat of formation + Delta-G solvation = 3.440289 kcal Electronic energy + Delta-G solvation = -21109.929254 eV Core-core repulsion = 17962.867278 eV Total energy + Delta-G solvation = -3147.061976 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.94192 -39.42349 -38.69208 -36.06076 -34.29637 -34.07080 -31.69186 -30.11316 -28.64651 -27.26408 -25.69773 -24.26063 -23.19620 -22.13220 -21.46417 -21.13884 -19.47239 -18.83210 -17.83249 -17.42176 -16.84171 -16.63162 -16.14951 -15.97220 -15.64706 -15.23554 -14.77119 -14.42740 -14.10628 -13.91587 -13.84510 -13.76941 -13.33433 -13.02166 -12.85825 -12.76032 -12.62148 -12.44798 -12.20719 -12.02637 -11.88672 -11.83540 -11.81630 -11.53427 -11.46065 -11.31759 -10.71024 -10.56958 -10.14496 -9.69051 -8.90228 -7.85237 -5.20963 0.36952 1.45718 1.47843 1.56492 2.28716 2.32235 2.49523 3.03202 3.33000 3.58794 3.61286 3.83559 3.90303 3.98091 4.02927 4.03278 4.14225 4.19739 4.34290 4.45075 4.62185 4.68690 4.72819 4.77880 4.80841 4.84457 4.92004 5.01213 5.06158 5.08046 5.12299 5.16826 5.27180 5.38527 5.45266 5.51521 5.57001 5.59146 5.67391 5.77612 6.19926 6.65443 7.10149 7.31797 7.77840 8.42450 9.25431 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028639 B = 0.002941 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.446073 B = 9519.119996 C =10301.692326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.002 3.998 3 C -0.239 4.239 4 C 0.538 3.462 5 O -0.581 6.581 6 N -0.717 5.717 7 C 0.146 3.854 8 C -0.095 4.095 9 H 0.089 0.911 10 C -0.123 4.123 11 C 0.183 3.817 12 N -0.630 5.630 13 C -0.242 4.242 14 H 0.084 0.916 15 C -0.069 4.069 16 N -0.953 5.953 17 Si 0.980 3.020 18 H -0.284 1.284 19 H -0.296 1.296 20 H -0.269 1.269 21 C 0.139 3.861 22 C -0.145 4.145 23 C -0.168 4.168 24 C -0.163 4.163 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.150 0.850 29 H 0.412 0.588 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.003 0.997 35 H 0.013 0.987 36 H 0.246 0.754 37 H 0.049 0.951 38 H 0.016 0.984 39 H 0.128 0.872 40 H 0.100 0.900 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.975 -24.289 -5.624 25.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.000 4.000 3 C -0.259 4.259 4 C 0.329 3.671 5 O -0.464 6.464 6 N -0.368 5.368 7 C 0.022 3.978 8 C -0.115 4.115 9 H 0.107 0.893 10 C -0.162 4.162 11 C 0.058 3.942 12 N -0.356 5.356 13 C -0.371 4.371 14 H 0.102 0.898 15 C -0.262 4.262 16 N -0.602 5.602 17 Si 0.808 3.192 18 H -0.211 1.211 19 H -0.222 1.222 20 H -0.193 1.193 21 C 0.014 3.986 22 C -0.163 4.163 23 C -0.204 4.204 24 C -0.200 4.200 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.167 0.833 29 H 0.248 0.752 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.022 0.978 35 H 0.032 0.968 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.034 0.966 39 H 0.146 0.854 40 H 0.119 0.881 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.718 -24.076 -5.711 25.022 hybrid contribution 1.020 1.231 0.796 1.786 sum -2.699 -22.845 -4.915 23.523 Atomic orbital electron populations 1.21092 0.91581 1.02343 1.02848 1.21995 0.95876 0.93385 0.88717 1.22361 1.01389 0.90654 1.11514 1.18970 0.86647 0.85120 0.76340 1.90732 1.16600 1.88228 1.50797 1.45894 1.13557 1.05209 1.72105 1.21107 0.93826 0.81347 1.01512 1.22411 0.98090 0.93774 0.97200 0.89274 1.22724 0.98493 0.94359 1.00602 1.20918 0.91776 0.91415 0.90098 1.44824 1.47187 1.02436 1.41145 1.19482 1.14813 0.91754 1.11077 0.89846 1.25692 1.02421 0.96252 1.01850 1.70199 1.46475 1.01514 1.42030 0.85056 0.78353 0.77125 0.78670 1.21075 1.22243 1.19330 1.21727 0.97010 0.85701 0.94173 1.21344 1.00730 0.87926 1.06328 1.23185 1.00441 0.97120 0.99676 1.23084 1.04124 1.01264 0.91487 0.91059 0.90780 0.91472 0.83273 0.75234 0.92574 0.90960 0.89609 0.91156 0.97846 0.96844 0.94441 0.93306 0.96590 0.85385 0.88142 0.86734 0.86713 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 7.91 71.24 0.56 -1.96 16 2 C 0.00 0.04 5.81 -17.62 -0.10 -0.06 16 3 C -0.24 -4.84 9.67 23.43 0.23 -4.62 16 4 C 0.54 14.33 7.61 86.57 0.66 14.99 16 5 O -0.58 -19.10 13.28 -4.07 -0.05 -19.15 16 6 N -0.72 -17.78 5.40 -466.70 -2.52 -20.30 16 7 C 0.15 4.08 5.12 86.38 0.44 4.52 16 8 C -0.10 -3.04 3.10 -9.40 -0.03 -3.07 16 9 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 10 C -0.12 -4.43 6.42 31.78 0.20 -4.23 16 11 C 0.18 9.14 5.37 86.73 0.47 9.61 16 12 N -0.63 -32.51 3.39 -691.99 -2.35 -34.86 16 13 C -0.24 -13.67 10.28 84.03 0.86 -12.80 16 14 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 15 C -0.07 -3.99 5.49 84.86 0.47 -3.53 16 16 N -0.95 -58.17 10.31 21.65 0.22 -57.94 16 17 Si 0.98 46.02 29.55 68.60 2.03 48.04 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 C 0.14 5.49 6.40 86.85 0.56 6.04 16 22 C -0.15 -1.90 6.01 -11.54 -0.07 -1.97 16 23 C -0.17 -1.72 9.77 30.62 0.30 -1.42 16 24 C -0.16 -1.74 10.10 30.62 0.31 -1.43 16 25 H 0.07 1.57 8.05 -2.39 -0.02 1.55 16 26 H 0.07 1.17 6.31 -2.39 -0.02 1.15 16 27 H 0.07 1.75 6.12 -2.39 -0.01 1.74 16 28 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 29 H 0.41 8.57 8.32 -92.71 -0.77 7.80 16 30 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16 31 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.07 2.39 8.04 -2.39 -0.02 2.37 16 34 H 0.00 0.19 7.51 -2.38 -0.02 0.17 16 35 H 0.01 0.74 7.38 -2.39 -0.02 0.73 16 36 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 37 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.02 0.66 8.01 -2.39 -0.02 0.64 16 39 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.10 1.06 6.42 -2.39 -0.02 1.05 16 41 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -70.73 345.90 2.40 -68.33 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.22 Total: 15.80 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 4.85 Total: 0.09 kcal Atomic # 7 Polarization: -108.46 SS G_CDS: -4.65 Total: -113.11 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.05 Total: -19.15 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -70.73 2.40 -68.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663566735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.770 kcal (2) G-P(sol) polarization free energy of solvation -70.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds