Wall clock time and date at job start Tue Mar 31 2020 00:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33000 * 120.00260 * 2 1 4 4 C 1.47095 * 120.00386 * 172.95528 * 3 2 1 5 5 O 1.21617 * 119.99907 * 354.03929 * 4 3 2 6 6 N 1.34771 * 120.00330 * 174.03566 * 4 3 2 7 7 C 1.46500 * 120.00325 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.47230 * 179.97438 * 7 6 4 9 9 H 1.09007 * 110.91305 * 57.44844 * 8 7 6 10 10 C 1.55160 * 111.00370 * 181.34527 * 8 7 6 11 11 C 1.54320 * 102.93923 * 153.57736 * 10 8 7 12 12 N 1.47014 * 107.27457 * 337.80735 * 11 10 8 13 13 C 1.36937 * 125.65214 * 179.20500 * 12 11 10 14 14 H 1.08006 * 120.00295 * 179.68867 * 13 12 11 15 15 C 1.38814 * 119.99787 * 359.69541 * 13 12 11 16 16 N 1.31615 * 120.00113 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99985 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47633 * 89.99825 * 17 15 13 19 19 H 1.48500 * 109.47021 * 209.99834 * 17 15 13 20 20 H 1.48502 * 109.47178 * 329.99676 * 17 15 13 21 21 C 1.47426 * 108.70333 * 358.94307 * 12 11 10 22 22 C 1.50703 * 120.00024 * 179.97438 * 2 1 3 23 23 C 1.52998 * 117.49530 * 1.64821 * 22 2 1 24 24 C 1.52997 * 117.49531 * 293.02664 * 22 2 1 25 25 H 1.09004 * 109.47044 * 90.00087 * 1 2 3 26 26 H 1.08991 * 109.47474 * 209.99873 * 1 2 3 27 27 H 1.09004 * 109.46806 * 330.00337 * 1 2 3 28 28 H 1.08008 * 119.99574 * 352.95663 * 3 2 1 29 29 H 0.97006 * 119.99790 * 0.02562 * 6 4 3 30 30 H 1.08998 * 109.47142 * 59.99716 * 7 6 4 31 31 H 1.09003 * 109.46649 * 299.99725 * 7 6 4 32 32 H 1.09003 * 110.72142 * 271.94157 * 10 8 7 33 33 H 1.09001 * 110.71649 * 35.03596 * 10 8 7 34 34 H 1.09001 * 109.87858 * 218.39084 * 11 10 8 35 35 H 1.09003 * 109.88115 * 97.22848 * 11 10 8 36 36 H 0.96994 * 120.00444 * 180.02562 * 16 15 13 37 37 H 1.09000 * 110.37112 * 142.96532 * 21 12 11 38 38 H 1.09004 * 110.36526 * 265.17755 * 21 12 11 39 39 H 1.08997 * 115.54978 * 147.36044 * 22 2 1 40 40 H 1.08998 * 117.50350 * 359.97438 * 23 22 2 41 41 H 1.08999 * 117.49449 * 145.02796 * 23 22 2 42 42 H 1.09005 * 117.49531 * 214.97904 * 24 22 2 43 43 H 1.09000 * 117.50396 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6347 1.1566 0.1562 5 8 4.2243 0.1198 0.3936 6 7 4.3214 2.3100 0.0363 7 6 5.7782 2.3147 0.1913 8 6 6.3059 3.7391 0.0082 9 1 5.8391 4.4214 0.7187 10 6 7.8521 3.7795 0.1321 11 6 8.2343 5.0130 -0.7128 12 7 7.1299 5.2583 -1.6517 13 6 7.0721 6.2742 -2.5681 14 1 6.2152 6.3662 -3.2191 15 6 8.1149 7.1858 -2.6604 16 7 9.1590 7.0739 -1.8668 17 14 8.0364 8.5712 -3.9108 18 1 7.3846 9.7559 -3.2970 19 1 9.4123 8.9298 -4.3393 20 1 7.2499 8.1294 -5.0905 21 6 6.0978 4.2256 -1.4476 22 6 2.2605 -1.3051 0.0006 23 6 1.4388 -2.5952 -0.0379 24 6 2.1539 -2.1817 1.2500 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8901 0.5138 28 1 1.6381 2.0836 -0.1147 29 1 3.8511 3.1371 -0.1528 30 1 6.2255 1.6627 -0.5589 31 1 6.0387 1.9555 1.1869 32 1 8.1523 3.9157 1.1711 33 1 8.2958 2.8734 -0.2805 34 1 9.1529 4.8139 -1.2649 35 1 8.3692 5.8790 -0.0647 36 1 9.8875 7.7110 -1.9311 37 1 5.1029 4.6550 -1.5655 38 1 6.2405 3.4029 -2.1484 39 1 3.2127 -1.2984 -0.5298 40 1 0.3533 -2.5000 -0.0632 41 1 1.8504 -3.4376 -0.5938 42 1 3.0360 -2.7521 1.5413 43 1 1.5385 -1.8147 2.0714 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663566737.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:50 Heat of formation + Delta-G solvation = 23.927134 kcal Electronic energy + Delta-G solvation = -21252.531585 eV Core-core repulsion = 18106.357985 eV Total energy + Delta-G solvation = -3146.173600 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.88634 -38.11654 -37.34892 -34.53872 -33.55322 -32.44407 -29.91785 -28.70857 -27.78548 -25.52929 -23.98179 -22.95409 -22.45338 -20.86121 -19.93558 -19.88721 -18.58984 -17.18273 -16.67528 -16.18877 -15.62825 -14.99094 -14.84351 -14.57747 -14.18966 -13.71614 -13.59761 -13.33395 -13.10790 -12.90261 -12.49884 -12.32223 -11.98612 -11.79097 -11.65691 -11.46344 -11.36067 -10.93598 -10.89598 -10.78887 -10.53417 -10.33613 -10.12412 -9.94780 -9.85155 -9.64693 -9.44608 -9.10505 -8.73897 -8.59688 -6.82622 -5.70875 -3.04398 1.22998 3.31675 3.39829 3.40073 3.44770 3.46936 3.83860 4.38139 4.49629 4.62184 4.84292 4.91050 4.96638 5.12171 5.21038 5.25787 5.27926 5.35935 5.44082 5.44993 5.55708 5.58664 5.70595 5.73854 5.92478 5.96116 6.06735 6.09384 6.10901 6.21100 6.36182 6.42847 6.50510 6.55483 6.56652 6.73091 6.93490 7.56418 7.64317 7.69538 7.83236 8.26671 8.38899 9.22622 9.83075 10.49379 11.40950 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033785 B = 0.002980 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.561134 B = 9394.871967 C = 9955.795595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.009 4.009 3 C -0.223 4.223 4 C 0.542 3.458 5 O -0.543 6.543 6 N -0.722 5.722 7 C 0.134 3.866 8 C -0.118 4.118 9 H 0.079 0.921 10 C -0.135 4.135 11 C 0.177 3.823 12 N -0.607 5.607 13 C -0.229 4.229 14 H 0.077 0.923 15 C -0.009 4.009 16 N -0.922 5.922 17 Si 0.912 3.088 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.143 3.857 22 C -0.116 4.116 23 C -0.191 4.191 24 C -0.156 4.156 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.128 0.872 29 H 0.401 0.599 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.252 0.748 37 H 0.035 0.965 38 H 0.019 0.981 39 H 0.134 0.866 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.879 -14.574 6.087 22.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.011 4.011 3 C -0.244 4.244 4 C 0.331 3.669 5 O -0.424 6.424 6 N -0.372 5.372 7 C 0.010 3.990 8 C -0.137 4.137 9 H 0.097 0.903 10 C -0.174 4.174 11 C 0.053 3.947 12 N -0.333 5.333 13 C -0.357 4.357 14 H 0.095 0.905 15 C -0.205 4.205 16 N -0.570 5.570 17 Si 0.743 3.257 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.016 3.984 22 C -0.134 4.134 23 C -0.228 4.228 24 C -0.193 4.193 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.146 0.854 29 H 0.236 0.764 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.036 0.964 39 H 0.152 0.848 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.282 -15.103 6.181 22.357 hybrid contribution -0.144 1.354 -0.759 1.559 sum -15.425 -13.749 5.422 21.363 Atomic orbital electron populations 1.21007 0.91246 1.03188 1.03007 1.21782 0.95110 0.93395 0.90772 1.22409 0.93655 0.98672 1.09677 1.18519 0.87748 0.83487 0.77107 1.90731 1.71159 1.31413 1.49048 1.45998 1.08555 1.10331 1.72348 1.21356 0.78887 0.97344 1.01381 1.22610 0.97535 0.94170 0.99435 0.90279 1.22858 0.93348 1.00743 1.00428 1.21142 0.90892 0.92189 0.90505 1.44488 1.17629 1.29702 1.41489 1.19058 1.03237 1.02615 1.10785 0.90495 1.24809 0.96704 0.99395 0.99625 1.69963 1.08812 1.37869 1.40335 0.86116 0.76799 0.82126 0.80705 1.21620 1.21670 1.20709 1.21555 0.92943 0.91773 0.92096 1.21472 1.00587 0.87813 1.03511 1.23136 0.98990 0.98764 1.01938 1.22789 1.02608 1.02625 0.91287 0.90299 0.90885 0.90958 0.85444 0.76444 0.91511 0.91816 0.92021 0.92238 0.93947 0.93549 0.93756 0.94697 0.96352 0.84836 0.88722 0.88700 0.88549 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.87 9.49 36.00 0.34 -0.53 16 2 C -0.01 -0.09 5.80 -101.16 -0.59 -0.67 16 3 C -0.22 -2.42 9.62 -37.81 -0.36 -2.78 16 4 C 0.54 7.51 7.67 -12.67 -0.10 7.42 16 5 O -0.54 -9.02 13.31 5.26 0.07 -8.95 16 6 N -0.72 -9.56 5.40 -61.49 -0.33 -9.89 16 7 C 0.13 1.99 5.12 -4.04 -0.02 1.96 16 8 C -0.12 -1.98 3.10 -88.47 -0.27 -2.25 16 9 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 10 C -0.13 -2.49 6.42 -24.90 -0.16 -2.65 16 11 C 0.18 4.32 5.37 -3.07 -0.02 4.30 16 12 N -0.61 -15.53 3.39 -170.08 -0.58 -16.11 16 13 C -0.23 -6.40 10.28 -15.06 -0.15 -6.56 16 14 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 15 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 16 N -0.92 -27.27 10.31 55.49 0.57 -26.70 16 17 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.14 2.89 6.41 -2.53 -0.02 2.87 16 22 C -0.12 -1.28 4.35 -91.77 -0.40 -1.68 16 23 C -0.19 -1.63 9.79 -26.73 -0.26 -1.89 16 24 C -0.16 -1.53 10.23 -26.73 -0.27 -1.81 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.44 6.37 -51.93 -0.33 0.11 16 27 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 28 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 29 H 0.40 4.61 8.32 -40.82 -0.34 4.27 16 30 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16 34 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 35 H 0.05 1.24 7.38 -51.93 -0.38 0.86 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.02 0.39 8.01 -51.93 -0.42 -0.03 16 39 H 0.13 1.83 6.23 -51.93 -0.32 1.50 16 40 H 0.09 0.66 6.31 -51.93 -0.33 0.33 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -32.07 346.12 -9.57 -41.64 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.12 Total: 2.29 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -2.38 Total: -4.63 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.34 Total: -52.70 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.07 Total: -8.95 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.07 -9.57 -41.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663566737.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.565 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds