Wall clock time and date at job start Tue Mar 31 2020 00:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33000 * 120.00260 * 2 1 4 4 C 1.47095 * 120.00386 * 172.95528 * 3 2 1 5 5 O 1.21617 * 119.99907 * 354.03929 * 4 3 2 6 6 N 1.34771 * 120.00330 * 174.03566 * 4 3 2 7 7 C 1.46500 * 120.00325 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.47230 * 179.97438 * 7 6 4 9 9 H 1.09007 * 110.91305 * 57.44844 * 8 7 6 10 10 C 1.55160 * 111.00370 * 181.34527 * 8 7 6 11 11 C 1.54320 * 102.93923 * 153.57736 * 10 8 7 12 12 N 1.47014 * 107.27457 * 337.80735 * 11 10 8 13 13 C 1.36937 * 125.65214 * 179.20500 * 12 11 10 14 14 H 1.08006 * 120.00295 * 179.68867 * 13 12 11 15 15 C 1.38814 * 119.99787 * 359.69541 * 13 12 11 16 16 N 1.31615 * 120.00113 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99985 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47633 * 89.99825 * 17 15 13 19 19 H 1.48500 * 109.47021 * 209.99834 * 17 15 13 20 20 H 1.48502 * 109.47178 * 329.99676 * 17 15 13 21 21 C 1.47426 * 108.70333 * 358.94307 * 12 11 10 22 22 C 1.50703 * 120.00024 * 179.97438 * 2 1 3 23 23 C 1.52998 * 117.49530 * 1.64821 * 22 2 1 24 24 C 1.52997 * 117.49531 * 293.02664 * 22 2 1 25 25 H 1.09004 * 109.47044 * 90.00087 * 1 2 3 26 26 H 1.08991 * 109.47474 * 209.99873 * 1 2 3 27 27 H 1.09004 * 109.46806 * 330.00337 * 1 2 3 28 28 H 1.08008 * 119.99574 * 352.95663 * 3 2 1 29 29 H 0.97006 * 119.99790 * 0.02562 * 6 4 3 30 30 H 1.08998 * 109.47142 * 59.99716 * 7 6 4 31 31 H 1.09003 * 109.46649 * 299.99725 * 7 6 4 32 32 H 1.09003 * 110.72142 * 271.94157 * 10 8 7 33 33 H 1.09001 * 110.71649 * 35.03596 * 10 8 7 34 34 H 1.09001 * 109.87858 * 218.39084 * 11 10 8 35 35 H 1.09003 * 109.88115 * 97.22848 * 11 10 8 36 36 H 0.96994 * 120.00444 * 180.02562 * 16 15 13 37 37 H 1.09000 * 110.37112 * 142.96532 * 21 12 11 38 38 H 1.09004 * 110.36526 * 265.17755 * 21 12 11 39 39 H 1.08997 * 115.54978 * 147.36044 * 22 2 1 40 40 H 1.08998 * 117.50350 * 359.97438 * 23 22 2 41 41 H 1.08999 * 117.49449 * 145.02796 * 23 22 2 42 42 H 1.09005 * 117.49531 * 214.97904 * 24 22 2 43 43 H 1.09000 * 117.50396 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6347 1.1566 0.1562 5 8 4.2243 0.1198 0.3936 6 7 4.3214 2.3100 0.0363 7 6 5.7782 2.3147 0.1913 8 6 6.3059 3.7391 0.0082 9 1 5.8391 4.4214 0.7187 10 6 7.8521 3.7795 0.1321 11 6 8.2343 5.0130 -0.7128 12 7 7.1299 5.2583 -1.6517 13 6 7.0721 6.2742 -2.5681 14 1 6.2152 6.3662 -3.2191 15 6 8.1149 7.1858 -2.6604 16 7 9.1590 7.0739 -1.8668 17 14 8.0364 8.5712 -3.9108 18 1 7.3846 9.7559 -3.2970 19 1 9.4123 8.9298 -4.3393 20 1 7.2499 8.1294 -5.0905 21 6 6.0978 4.2256 -1.4476 22 6 2.2605 -1.3051 0.0006 23 6 1.4388 -2.5952 -0.0379 24 6 2.1539 -2.1817 1.2500 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8901 0.5138 28 1 1.6381 2.0836 -0.1147 29 1 3.8511 3.1371 -0.1528 30 1 6.2255 1.6627 -0.5589 31 1 6.0387 1.9555 1.1869 32 1 8.1523 3.9157 1.1711 33 1 8.2958 2.8734 -0.2805 34 1 9.1529 4.8139 -1.2649 35 1 8.3692 5.8790 -0.0647 36 1 9.8875 7.7110 -1.9311 37 1 5.1029 4.6550 -1.5655 38 1 6.2405 3.4029 -2.1484 39 1 3.2127 -1.2984 -0.5298 40 1 0.3533 -2.5000 -0.0632 41 1 1.8504 -3.4376 -0.5938 42 1 3.0360 -2.7521 1.5413 43 1 1.5385 -1.8147 2.0714 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663566737.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:49 Heat of formation + Delta-G solvation = 4.395684 kcal Electronic energy + Delta-G solvation = -21253.378532 eV Core-core repulsion = 18106.357985 eV Total energy + Delta-G solvation = -3147.020547 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.92619 -39.43930 -38.49048 -35.94583 -34.39422 -34.16024 -31.67499 -30.11745 -28.82090 -27.22859 -25.43522 -24.00474 -23.17594 -22.18524 -21.52596 -21.30279 -19.55406 -18.83419 -17.92426 -17.29113 -16.86416 -16.62340 -16.01528 -15.86628 -15.65431 -15.12027 -14.66655 -14.27645 -14.07266 -13.89774 -13.87505 -13.80977 -13.38156 -13.11668 -13.01275 -12.78483 -12.62647 -12.47051 -12.17708 -12.02773 -11.89989 -11.83629 -11.64282 -11.53914 -11.46802 -11.27230 -10.71216 -10.48897 -10.08448 -9.67263 -8.90553 -7.85395 -5.21202 0.40678 1.45643 1.47807 1.56448 2.32043 2.37209 2.49419 3.08592 3.32870 3.60843 3.64914 3.78769 3.92078 4.02510 4.03107 4.07504 4.19718 4.28759 4.44806 4.46754 4.61531 4.68078 4.71782 4.76395 4.80695 4.83950 4.91535 4.98600 5.05360 5.07540 5.12376 5.25455 5.28354 5.38988 5.45012 5.47249 5.56582 5.66808 5.68289 5.77179 6.19623 6.68650 7.09903 7.36032 7.77572 8.42237 9.25314 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033785 B = 0.002980 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.561134 B = 9394.871967 C = 9955.795595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.001 3.999 3 C -0.242 4.242 4 C 0.536 3.464 5 O -0.578 6.578 6 N -0.718 5.718 7 C 0.147 3.853 8 C -0.095 4.095 9 H 0.089 0.911 10 C -0.123 4.123 11 C 0.184 3.816 12 N -0.630 5.630 13 C -0.243 4.243 14 H 0.084 0.916 15 C -0.069 4.069 16 N -0.953 5.953 17 Si 0.980 3.020 18 H -0.284 1.284 19 H -0.296 1.296 20 H -0.268 1.268 21 C 0.139 3.861 22 C -0.142 4.142 23 C -0.169 4.169 24 C -0.162 4.162 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.154 0.846 29 H 0.411 0.589 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.003 0.997 35 H 0.013 0.987 36 H 0.246 0.754 37 H 0.049 0.951 38 H 0.016 0.984 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.811 -15.181 6.263 24.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.001 4.001 3 C -0.262 4.262 4 C 0.327 3.673 5 O -0.460 6.460 6 N -0.369 5.369 7 C 0.023 3.977 8 C -0.115 4.115 9 H 0.107 0.893 10 C -0.162 4.162 11 C 0.058 3.942 12 N -0.356 5.356 13 C -0.372 4.372 14 H 0.102 0.898 15 C -0.262 4.262 16 N -0.602 5.602 17 Si 0.808 3.192 18 H -0.211 1.211 19 H -0.222 1.222 20 H -0.193 1.193 21 C 0.014 3.986 22 C -0.160 4.160 23 C -0.205 4.205 24 C -0.199 4.199 25 H 0.110 0.890 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.172 0.828 29 H 0.247 0.753 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.021 0.979 35 H 0.032 0.968 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.033 0.967 39 H 0.118 0.882 40 H 0.136 0.864 41 H 0.117 0.883 42 H 0.105 0.895 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.259 -15.721 6.354 24.918 hybrid contribution 0.759 1.450 -0.832 1.837 sum -17.500 -14.270 5.521 23.246 Atomic orbital electron populations 1.21088 0.88428 1.04491 1.04181 1.22132 0.96942 0.92436 0.88566 1.22480 0.91789 1.00290 1.11677 1.19080 0.89096 0.82846 0.76277 1.90726 1.72121 1.32533 1.50670 1.45914 1.07787 1.10899 1.72306 1.21077 0.79962 0.95317 1.01351 1.22411 0.96296 0.95522 0.97228 0.89263 1.22724 0.94702 0.98153 1.00612 1.20910 0.89663 0.93495 0.90095 1.44824 1.19233 1.30274 1.41260 1.19488 1.03322 1.03176 1.11190 0.89823 1.25691 0.96572 1.02100 1.01824 1.70193 1.09389 1.38629 1.42013 0.85055 0.76440 0.79035 0.78666 1.21050 1.22249 1.19323 1.21722 0.92238 0.90447 0.94168 1.21394 1.00369 0.89763 1.04476 1.23230 0.99962 0.97105 1.00238 1.22833 1.02834 1.02407 0.91789 0.88950 0.89715 0.89567 0.82831 0.75280 0.92750 0.91123 0.89628 0.91234 0.97873 0.96828 0.94433 0.93259 0.96656 0.88160 0.86388 0.88324 0.89533 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 9.49 71.24 0.68 -0.57 16 2 C 0.00 0.02 5.80 -17.61 -0.10 -0.08 16 3 C -0.24 -4.79 9.62 23.43 0.23 -4.56 16 4 C 0.54 14.38 7.67 86.57 0.66 15.04 16 5 O -0.58 -19.28 13.31 -4.09 -0.05 -19.34 16 6 N -0.72 -17.94 5.40 -466.72 -2.52 -20.46 16 7 C 0.15 4.16 5.12 86.38 0.44 4.60 16 8 C -0.09 -3.06 3.10 -9.40 -0.03 -3.08 16 9 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 10 C -0.12 -4.47 6.42 31.78 0.20 -4.26 16 11 C 0.18 9.19 5.37 86.73 0.47 9.66 16 12 N -0.63 -32.59 3.39 -692.01 -2.35 -34.94 16 13 C -0.24 -13.71 10.28 84.03 0.86 -12.85 16 14 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 15 C -0.07 -3.98 5.49 84.86 0.47 -3.52 16 16 N -0.95 -58.22 10.31 21.65 0.22 -58.00 16 17 Si 0.98 46.03 29.55 68.60 2.03 48.05 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 21 C 0.14 5.52 6.41 86.85 0.56 6.08 16 22 C -0.14 -3.02 4.35 -11.54 -0.05 -3.07 16 23 C -0.17 -2.52 9.79 30.59 0.30 -2.22 16 24 C -0.16 -2.99 10.23 30.59 0.31 -2.68 16 25 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.08 0.67 6.37 -2.39 -0.02 0.65 16 27 H 0.09 0.66 8.07 -2.38 -0.02 0.64 16 28 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 29 H 0.41 8.58 8.32 -92.70 -0.77 7.81 16 30 H 0.05 1.69 8.10 -2.39 -0.02 1.68 16 31 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.07 2.39 8.04 -2.39 -0.02 2.37 16 34 H 0.00 0.17 7.51 -2.39 -0.02 0.15 16 35 H 0.01 0.75 7.38 -2.39 -0.02 0.74 16 36 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 37 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.02 0.64 8.01 -2.38 -0.02 0.62 16 39 H 0.10 2.84 6.23 -2.39 -0.01 2.82 16 40 H 0.12 1.21 6.31 -2.39 -0.02 1.20 16 41 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -71.90 346.12 2.54 -69.36 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.22 Total: 16.83 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 4.99 Total: -1.51 kcal Atomic # 7 Polarization: -108.75 SS G_CDS: -4.65 Total: -113.40 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.05 Total: -19.34 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -71.90 2.54 -69.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663566737.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.754 kcal (2) G-P(sol) polarization free energy of solvation -71.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds