Wall clock time and date at job start Tue Mar 31 2020 01:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47056 * 2 1 4 4 N 1.46500 * 109.46919 * 179.97438 * 3 2 1 5 5 C 1.36934 * 119.99964 * 179.97438 * 4 3 2 6 6 H 1.08006 * 119.99906 * 359.72201 * 5 4 3 7 7 C 1.38806 * 120.00327 * 180.02562 * 5 4 3 8 8 N 1.31621 * 120.00704 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99826 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.47060 * 89.99972 * 9 7 5 11 11 H 1.48500 * 109.47269 * 210.00048 * 9 7 5 12 12 H 1.48497 * 109.47138 * 330.00162 * 9 7 5 13 13 N 1.46504 * 109.46752 * 119.99669 * 2 1 3 14 14 C 1.34779 * 120.00059 * 298.24708 * 13 2 1 15 15 O 1.21616 * 119.99971 * 5.13021 * 14 13 2 16 16 C 1.47103 * 120.00070 * 185.12979 * 14 13 2 17 17 C 1.32986 * 119.99901 * 180.02562 * 16 14 13 18 18 C 1.51407 * 136.31977 * 359.62763 * 17 16 14 19 19 C 1.53371 * 87.52023 * 206.05889 * 18 17 16 20 20 C 1.51408 * 136.31699 * 179.97438 * 17 16 14 21 21 C 1.52999 * 109.47349 * 239.99759 * 2 1 3 22 22 C 1.52996 * 117.49858 * 12.06825 * 21 2 1 23 23 C 1.53003 * 117.49686 * 303.40987 * 21 2 1 24 24 H 1.09000 * 109.46548 * 60.00260 * 1 2 3 25 25 H 1.08999 * 109.47107 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47273 * 300.00344 * 1 2 3 27 27 H 1.08996 * 109.47361 * 59.99710 * 3 2 1 28 28 H 1.08997 * 109.46756 * 299.99520 * 3 2 1 29 29 H 0.97001 * 119.99955 * 0.02562 * 4 3 2 30 30 H 0.96992 * 120.00735 * 180.02562 * 8 7 5 31 31 H 0.96996 * 119.99987 * 118.24744 * 13 2 1 32 32 H 1.07999 * 119.99611 * 359.97438 * 16 14 13 33 33 H 1.09006 * 113.55951 * 320.64053 * 18 17 16 34 34 H 1.08993 * 113.56248 * 91.37238 * 18 17 16 35 35 H 1.08998 * 113.96972 * 220.28876 * 19 18 17 36 36 H 1.08999 * 113.60227 * 88.78997 * 19 18 17 37 37 H 1.09002 * 113.56062 * 268.62928 * 20 17 16 38 38 H 1.09002 * 113.55967 * 39.36035 * 20 17 16 39 39 H 1.08995 * 115.54764 * 157.74149 * 21 2 1 40 40 H 1.09007 * 117.49836 * 0.02562 * 22 21 2 41 41 H 1.08999 * 117.49987 * 145.02265 * 22 21 2 42 42 H 1.09003 * 117.49688 * 214.98336 * 23 21 2 43 43 H 1.09003 * 117.49976 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1897 2.6283 0.0002 6 1 3.6497 3.5637 -0.0051 7 6 5.5778 2.6284 0.0002 8 7 6.2360 3.7682 -0.0007 9 14 6.5118 1.0106 0.0016 10 1 6.7593 0.5808 -1.3982 11 1 7.8093 1.1887 0.7015 12 1 5.7092 -0.0237 0.7024 13 7 2.0183 -0.6906 1.1963 14 6 1.7221 -0.2098 2.4200 15 8 0.9734 0.7417 2.5347 16 6 2.3043 -0.8359 3.6171 17 6 2.0116 -0.3618 4.8246 18 6 1.1651 0.7619 5.3841 19 6 2.0978 0.7689 6.6016 20 6 2.3810 -0.7010 6.2532 21 6 2.0401 -0.7213 -1.2492 22 6 1.0244 -1.0298 -2.3510 23 6 1.5710 -2.1600 -1.4752 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6767 1.9564 0.8899 28 1 1.6767 1.9562 -0.8900 29 1 3.9900 0.6024 0.0006 30 1 7.2059 3.7682 -0.0010 31 1 2.5548 -1.4938 1.1076 32 1 2.9688 -1.6812 3.5152 33 1 1.2129 1.6781 4.7954 34 1 0.1438 0.4625 5.6193 35 1 1.5832 0.9045 7.5528 36 1 2.9616 1.4234 6.4858 37 1 1.6930 -1.4014 6.7266 38 1 3.4261 -0.9847 6.3773 39 1 3.0548 -0.4686 -1.5565 40 1 -0.0072 -0.7185 -2.1861 41 1 1.3710 -0.9805 -3.3832 42 1 2.2772 -2.8537 -1.9316 43 1 0.8987 -2.5925 -0.7342 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665985366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:55 Heat of formation + Delta-G solvation = 49.643518 kcal Electronic energy + Delta-G solvation = -22522.416334 eV Core-core repulsion = 19377.357881 eV Total energy + Delta-G solvation = -3145.058454 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.14023 -38.76582 -37.45051 -34.75727 -33.42769 -31.63586 -30.70688 -29.47669 -26.09369 -25.75430 -24.13029 -22.91894 -22.28030 -21.80741 -20.49520 -18.94220 -18.09263 -17.61938 -16.87115 -15.88979 -15.48109 -15.25351 -14.69900 -14.60646 -14.32053 -14.11632 -13.67151 -13.01938 -12.77818 -12.47271 -12.35626 -12.22600 -12.01918 -12.00269 -11.67040 -11.63117 -11.12720 -10.98881 -10.94842 -10.86316 -10.73726 -10.41235 -10.25293 -10.19439 -9.88621 -9.52541 -9.20296 -9.07666 -8.76337 -8.55160 -7.10301 -5.69370 -3.02503 1.56258 3.32780 3.37776 3.39089 3.45895 3.70461 4.00670 4.44578 4.51460 4.63717 4.71374 4.76827 4.99338 5.08832 5.09956 5.20429 5.33192 5.36886 5.49423 5.58306 5.61936 5.62759 5.69067 5.72925 5.80650 5.89528 5.95935 6.01170 6.05207 6.15251 6.18608 6.23216 6.36063 6.37546 6.54466 6.60777 6.71592 6.90790 7.09932 7.95465 8.09061 8.49738 8.68460 9.29897 10.02105 10.23535 11.49739 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011078 B = 0.007350 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.947824 B = 3808.794232 C = 5409.999617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.200 3.800 3 C 0.149 3.851 4 N -0.750 5.750 5 C -0.232 4.232 6 H 0.089 0.911 7 C 0.001 3.999 8 N -0.937 5.937 9 Si 0.882 3.118 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.279 1.279 13 N -0.714 5.714 14 C 0.558 3.442 15 O -0.534 6.534 16 C -0.194 4.194 17 C -0.067 4.067 18 C -0.104 4.104 19 C -0.143 4.143 20 C -0.109 4.109 21 C -0.155 4.155 22 C -0.169 4.169 23 C -0.183 4.183 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.032 0.968 29 H 0.358 0.642 30 H 0.257 0.743 31 H 0.395 0.605 32 H 0.127 0.873 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.379 -14.715 6.354 19.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.114 3.886 3 C 0.021 3.979 4 N -0.395 5.395 5 C -0.362 4.362 6 H 0.107 0.893 7 C -0.194 4.194 8 N -0.586 5.586 9 Si 0.713 3.287 10 H -0.213 1.213 11 H -0.219 1.219 12 H -0.205 1.205 13 N -0.364 5.364 14 C 0.347 3.653 15 O -0.412 6.412 16 C -0.214 4.214 17 C -0.069 4.069 18 C -0.141 4.141 19 C -0.180 4.180 20 C -0.146 4.146 21 C -0.174 4.174 22 C -0.207 4.207 23 C -0.220 4.220 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.100 0.900 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.191 0.809 30 H 0.068 0.932 31 H 0.228 0.772 32 H 0.145 0.855 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.133 0.867 40 H 0.120 0.880 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.864 -13.759 6.426 19.271 hybrid contribution 1.418 -1.570 -0.187 2.124 sum -10.446 -15.329 6.239 19.571 Atomic orbital electron populations 1.22277 0.94506 1.01575 1.03633 1.20053 0.93414 0.93039 0.82070 1.21029 0.85034 0.91800 1.00020 1.42598 1.00803 1.05030 1.91085 1.19083 0.89460 0.85946 1.41753 0.89328 1.24634 0.96065 0.96064 1.02658 1.69696 1.06802 1.23735 1.58382 0.86575 0.79775 0.84812 0.77580 1.21270 1.21870 1.20487 1.45856 1.55322 1.29994 1.05201 1.18197 0.80801 0.83146 0.83115 1.90694 1.36356 1.27539 1.86654 1.21632 1.05606 1.02875 0.91327 1.23352 0.94907 0.95083 0.93532 1.22181 0.97672 0.98539 0.95714 1.22730 1.00596 0.96230 0.98452 1.22338 1.02172 0.97791 0.92262 1.22562 1.00564 0.97170 0.97073 1.23067 0.99278 1.02513 0.95814 1.22966 1.04062 0.91430 1.03572 0.91650 0.93026 0.90044 0.92922 0.95029 0.80897 0.93242 0.77161 0.85541 0.89197 0.88815 0.90655 0.89570 0.88475 0.90593 0.86662 0.88029 0.88800 0.88977 0.88841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 7.06 37.16 0.26 -2.06 16 2 C 0.20 3.24 0.54 -131.82 -0.07 3.17 16 3 C 0.15 3.15 4.94 -4.04 -0.02 3.13 16 4 N -0.75 -18.41 4.83 -59.91 -0.29 -18.70 16 5 C -0.23 -6.84 10.47 -15.06 -0.16 -7.00 16 6 H 0.09 2.83 8.06 -52.48 -0.42 2.40 16 7 C 0.00 0.02 5.50 -17.43 -0.10 -0.07 16 8 N -0.94 -30.27 13.97 55.49 0.78 -29.50 16 9 Si 0.88 22.55 27.73 -169.99 -4.71 17.84 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 12 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 13 N -0.71 -11.11 4.72 -48.77 -0.23 -11.34 16 14 C 0.56 9.55 7.17 -12.66 -0.09 9.46 16 15 O -0.53 -10.52 11.38 5.26 0.06 -10.46 16 16 C -0.19 -2.80 10.03 -37.81 -0.38 -3.18 16 17 C -0.07 -0.90 6.93 -100.48 -0.70 -1.60 16 18 C -0.10 -1.36 6.99 -27.56 -0.19 -1.55 16 19 C -0.14 -1.52 8.17 -26.19 -0.21 -1.74 16 20 C -0.11 -1.10 7.96 -27.39 -0.22 -1.32 16 21 C -0.15 -2.25 4.86 -90.62 -0.44 -2.69 16 22 C -0.17 -2.02 9.63 -26.70 -0.26 -2.28 16 23 C -0.18 -2.06 9.72 -26.69 -0.26 -2.32 16 24 H 0.06 0.87 6.81 -51.93 -0.35 0.51 16 25 H 0.05 0.65 7.00 -51.93 -0.36 0.28 16 26 H 0.08 1.34 6.12 -51.93 -0.32 1.02 16 27 H 0.05 1.25 6.22 -51.93 -0.32 0.93 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.36 8.47 4.49 -40.82 -0.18 8.29 16 30 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 31 H 0.39 5.26 8.37 -40.82 -0.34 4.92 16 32 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 33 H 0.09 1.42 7.49 -51.93 -0.39 1.03 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.12 1.95 7.09 -51.93 -0.37 1.58 16 40 H 0.10 1.13 5.88 -51.92 -0.31 0.83 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.09 0.98 7.39 -51.93 -0.38 0.60 16 LS Contribution 339.75 15.07 5.12 5.12 Total: -1.00 -33.95 339.75 -8.83 -42.79 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -6.72 Total: 14.32 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -2.83 Total: -10.06 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 0.26 Total: -59.54 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.06 Total: -10.46 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.71 Total: 17.84 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.95 -8.83 -42.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665985366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.430 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds