Wall clock time and date at job start Tue Mar 31 2020 01:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47056 * 2 1 4 4 N 1.46500 * 109.46919 * 179.97438 * 3 2 1 5 5 C 1.36934 * 119.99964 * 179.97438 * 4 3 2 6 6 H 1.08006 * 119.99906 * 359.72201 * 5 4 3 7 7 C 1.38806 * 120.00327 * 180.02562 * 5 4 3 8 8 N 1.31621 * 120.00704 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99826 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.47060 * 89.99972 * 9 7 5 11 11 H 1.48500 * 109.47269 * 210.00048 * 9 7 5 12 12 H 1.48497 * 109.47138 * 330.00162 * 9 7 5 13 13 N 1.46504 * 109.46752 * 119.99669 * 2 1 3 14 14 C 1.34779 * 120.00059 * 298.24708 * 13 2 1 15 15 O 1.21616 * 119.99971 * 5.13021 * 14 13 2 16 16 C 1.47103 * 120.00070 * 185.12979 * 14 13 2 17 17 C 1.32986 * 119.99901 * 180.02562 * 16 14 13 18 18 C 1.51407 * 136.31977 * 359.62763 * 17 16 14 19 19 C 1.53371 * 87.52023 * 206.05889 * 18 17 16 20 20 C 1.51408 * 136.31699 * 179.97438 * 17 16 14 21 21 C 1.52999 * 109.47349 * 239.99759 * 2 1 3 22 22 C 1.52996 * 117.49858 * 12.06825 * 21 2 1 23 23 C 1.53003 * 117.49686 * 303.40987 * 21 2 1 24 24 H 1.09000 * 109.46548 * 60.00260 * 1 2 3 25 25 H 1.08999 * 109.47107 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47273 * 300.00344 * 1 2 3 27 27 H 1.08996 * 109.47361 * 59.99710 * 3 2 1 28 28 H 1.08997 * 109.46756 * 299.99520 * 3 2 1 29 29 H 0.97001 * 119.99955 * 0.02562 * 4 3 2 30 30 H 0.96992 * 120.00735 * 180.02562 * 8 7 5 31 31 H 0.96996 * 119.99987 * 118.24744 * 13 2 1 32 32 H 1.07999 * 119.99611 * 359.97438 * 16 14 13 33 33 H 1.09006 * 113.55951 * 320.64053 * 18 17 16 34 34 H 1.08993 * 113.56248 * 91.37238 * 18 17 16 35 35 H 1.08998 * 113.96972 * 220.28876 * 19 18 17 36 36 H 1.08999 * 113.60227 * 88.78997 * 19 18 17 37 37 H 1.09002 * 113.56062 * 268.62928 * 20 17 16 38 38 H 1.09002 * 113.55967 * 39.36035 * 20 17 16 39 39 H 1.08995 * 115.54764 * 157.74149 * 21 2 1 40 40 H 1.09007 * 117.49836 * 0.02562 * 22 21 2 41 41 H 1.08999 * 117.49987 * 145.02265 * 22 21 2 42 42 H 1.09003 * 117.49688 * 214.98336 * 23 21 2 43 43 H 1.09003 * 117.49976 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1897 2.6283 0.0002 6 1 3.6497 3.5637 -0.0051 7 6 5.5778 2.6284 0.0002 8 7 6.2360 3.7682 -0.0007 9 14 6.5118 1.0106 0.0016 10 1 6.7593 0.5808 -1.3982 11 1 7.8093 1.1887 0.7015 12 1 5.7092 -0.0237 0.7024 13 7 2.0183 -0.6906 1.1963 14 6 1.7221 -0.2098 2.4200 15 8 0.9734 0.7417 2.5347 16 6 2.3043 -0.8359 3.6171 17 6 2.0116 -0.3618 4.8246 18 6 1.1651 0.7619 5.3841 19 6 2.0978 0.7689 6.6016 20 6 2.3810 -0.7010 6.2532 21 6 2.0401 -0.7213 -1.2492 22 6 1.0244 -1.0298 -2.3510 23 6 1.5710 -2.1600 -1.4752 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6767 1.9564 0.8899 28 1 1.6767 1.9562 -0.8900 29 1 3.9900 0.6024 0.0006 30 1 7.2059 3.7682 -0.0010 31 1 2.5548 -1.4938 1.1076 32 1 2.9688 -1.6812 3.5152 33 1 1.2129 1.6781 4.7954 34 1 0.1438 0.4625 5.6193 35 1 1.5832 0.9045 7.5528 36 1 2.9616 1.4234 6.4858 37 1 1.6930 -1.4014 6.7266 38 1 3.4261 -0.9847 6.3773 39 1 3.0548 -0.4686 -1.5565 40 1 -0.0072 -0.7185 -2.1861 41 1 1.3710 -0.9805 -3.3832 42 1 2.2772 -2.8537 -1.9316 43 1 0.8987 -2.5925 -0.7342 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665985366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:54 Heat of formation + Delta-G solvation = 27.060978 kcal Electronic energy + Delta-G solvation = -22523.395587 eV Core-core repulsion = 19377.357881 eV Total energy + Delta-G solvation = -3146.037706 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.41185 -39.78906 -38.59929 -36.52130 -34.95883 -33.45351 -32.26021 -30.71707 -27.81197 -26.66786 -25.47312 -24.13364 -23.75998 -23.13416 -21.59697 -20.39679 -19.71599 -19.12781 -18.01382 -17.07579 -16.67189 -16.58106 -16.38890 -15.78390 -15.68974 -15.54762 -15.04017 -14.75062 -14.43718 -13.91930 -13.85975 -13.43977 -13.32554 -13.19203 -12.91752 -12.86597 -12.63747 -12.34614 -12.28787 -12.07913 -12.01647 -11.87812 -11.85575 -11.40953 -11.23035 -11.10353 -10.97035 -10.40424 -10.19583 -9.83523 -9.28292 -8.05239 -5.37879 0.45795 1.30062 1.36490 1.43774 2.16094 2.44786 2.47236 3.00485 3.24985 3.44655 3.53754 3.58913 3.72131 3.82400 3.86094 4.13113 4.17135 4.20193 4.26893 4.38527 4.61130 4.62213 4.73400 4.77461 4.82515 4.84491 4.87989 4.93513 4.96824 5.02079 5.02717 5.08874 5.25789 5.29202 5.32052 5.37384 5.42655 5.67655 5.70257 5.73723 6.17843 6.75690 7.04783 7.43432 7.79425 8.03889 9.17050 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011078 B = 0.007350 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.947824 B = 3808.794232 C = 5409.999617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.210 3.790 3 C 0.149 3.851 4 N -0.742 5.742 5 C -0.234 4.234 6 H 0.044 0.956 7 C -0.066 4.066 8 N -0.986 5.986 9 Si 0.959 3.041 10 H -0.273 1.273 11 H -0.294 1.294 12 H -0.250 1.250 13 N -0.707 5.707 14 C 0.545 3.455 15 O -0.572 6.572 16 C -0.215 4.215 17 C -0.076 4.076 18 C -0.116 4.116 19 C -0.137 4.137 20 C -0.091 4.091 21 C -0.183 4.183 22 C -0.164 4.164 23 C -0.152 4.152 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.020 0.980 28 H 0.023 0.977 29 H 0.367 0.633 30 H 0.258 0.742 31 H 0.408 0.592 32 H 0.155 0.845 33 H 0.048 0.952 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.127 0.873 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.513 -18.969 6.907 23.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.124 3.876 3 C 0.021 3.979 4 N -0.388 5.388 5 C -0.365 4.365 6 H 0.062 0.938 7 C -0.257 4.257 8 N -0.637 5.637 9 Si 0.785 3.215 10 H -0.199 1.199 11 H -0.221 1.221 12 H -0.174 1.174 13 N -0.358 5.358 14 C 0.336 3.664 15 O -0.453 6.453 16 C -0.235 4.235 17 C -0.078 4.078 18 C -0.153 4.153 19 C -0.175 4.175 20 C -0.127 4.127 21 C -0.202 4.202 22 C -0.201 4.201 23 C -0.189 4.189 24 H 0.093 0.907 25 H 0.097 0.903 26 H 0.075 0.925 27 H 0.038 0.962 28 H 0.041 0.959 29 H 0.201 0.799 30 H 0.067 0.933 31 H 0.244 0.756 32 H 0.173 0.827 33 H 0.067 0.933 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.145 0.855 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.129 0.871 41 H 0.119 0.881 42 H 0.127 0.873 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.026 -18.062 6.969 22.791 hybrid contribution 1.363 -0.073 -0.353 1.410 sum -10.662 -18.135 6.616 22.053 Atomic orbital electron populations 1.22188 0.92949 1.03012 1.02899 1.19830 0.94397 0.89918 0.83498 1.21062 0.83108 0.95750 0.97930 1.42438 1.02058 1.03617 1.90727 1.19001 0.89919 0.86253 1.41327 0.93784 1.25543 0.96971 1.00603 1.02572 1.69902 1.07116 1.26824 1.59828 0.85357 0.77803 0.79984 0.78373 1.19863 1.22086 1.17429 1.45825 1.55164 1.30171 1.04609 1.18821 0.80437 0.82815 0.84328 1.90686 1.38132 1.29260 1.87260 1.21777 1.07013 1.04281 0.90449 1.23898 0.94076 0.94636 0.95151 1.22303 0.99290 0.96942 0.96742 1.22711 0.99508 0.96799 0.98440 1.22374 1.03577 0.97594 0.89162 1.22322 1.00150 1.00450 0.97308 1.23200 0.98953 1.02346 0.95616 1.23064 1.03396 0.89726 1.02736 0.90693 0.90331 0.92533 0.96178 0.95866 0.79917 0.93322 0.75570 0.82714 0.93282 0.87346 0.87972 0.90976 0.85530 0.89375 0.89065 0.87129 0.88055 0.87301 0.87428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 7.06 71.98 0.51 -3.73 16 2 C 0.21 6.67 0.54 3.60 0.00 6.68 16 3 C 0.15 6.56 4.94 86.38 0.43 6.98 16 4 N -0.74 -37.24 4.83 -343.46 -1.66 -38.90 16 5 C -0.23 -14.38 10.47 84.03 0.88 -13.50 16 6 H 0.04 3.03 8.06 -2.91 -0.02 3.00 16 7 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 8 N -0.99 -65.82 13.97 21.65 0.30 -65.52 16 9 Si 0.96 46.58 27.73 68.60 1.90 48.49 16 10 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 12 H -0.25 -10.83 6.52 99.48 0.65 -10.18 16 13 N -0.71 -21.19 4.72 -426.46 -2.01 -23.21 16 14 C 0.55 18.67 7.17 86.57 0.62 19.29 16 15 O -0.57 -23.62 11.38 -4.08 -0.05 -23.66 16 16 C -0.21 -5.94 10.03 23.43 0.23 -5.71 16 17 C -0.08 -1.95 6.93 -17.17 -0.12 -2.07 16 18 C -0.12 -3.03 6.99 30.06 0.21 -2.82 16 19 C -0.14 -2.71 8.17 30.95 0.25 -2.46 16 20 C -0.09 -1.55 7.96 30.16 0.24 -1.31 16 21 C -0.18 -4.96 4.86 -10.79 -0.05 -5.02 16 22 C -0.16 -3.42 9.63 30.62 0.29 -3.12 16 23 C -0.15 -2.81 9.72 30.62 0.30 -2.51 16 24 H 0.07 1.91 6.81 -2.39 -0.02 1.89 16 25 H 0.08 1.76 7.00 -2.39 -0.02 1.74 16 26 H 0.06 1.89 6.12 -2.39 -0.01 1.87 16 27 H 0.02 1.03 6.22 -2.39 -0.01 1.01 16 28 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.37 17.07 4.49 -92.71 -0.42 16.65 16 30 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 31 H 0.41 9.83 8.37 -92.71 -0.78 9.06 16 32 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 33 H 0.05 1.67 7.49 -2.38 -0.02 1.66 16 34 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.09 2.95 7.09 -2.39 -0.02 2.93 16 40 H 0.11 2.11 5.88 -2.38 -0.01 2.10 16 41 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.11 1.73 7.39 -2.39 -0.02 1.71 16 Total: -1.00 -78.73 339.75 2.51 -76.22 By element: Atomic # 1 Polarization: 39.73 SS G_CDS: -0.23 Total: 39.50 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 4.26 Total: -12.90 kcal Atomic # 7 Polarization: -124.26 SS G_CDS: -3.37 Total: -127.63 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.05 Total: -23.66 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.90 Total: 48.49 kcal Total: -78.73 2.51 -76.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665985366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.277 kcal (2) G-P(sol) polarization free energy of solvation -78.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds