Wall clock time and date at job start Tue Mar 31 2020 01:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47094 * 2 1 4 4 N 1.46498 * 109.47359 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00463 * 179.97438 * 4 3 2 6 6 H 1.08005 * 120.00104 * 0.02562 * 5 4 3 7 7 C 1.38815 * 120.00297 * 180.02562 * 5 4 3 8 8 N 1.31614 * 119.99850 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00046 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46858 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.46896 * 119.99560 * 9 7 5 12 12 H 1.48495 * 109.46907 * 239.99949 * 9 7 5 13 13 N 1.46501 * 109.47232 * 119.99691 * 2 1 3 14 14 C 1.34772 * 120.00037 * 298.26697 * 13 2 1 15 15 O 1.21615 * 120.00034 * 5.11962 * 14 13 2 16 16 C 1.47106 * 120.00048 * 185.12924 * 14 13 2 17 17 C 1.32608 * 124.62020 * 179.69697 * 16 14 13 18 18 C 1.51111 * 110.75806 * 179.84000 * 17 16 14 19 19 C 1.54579 * 104.90305 * 343.80763 * 18 17 16 20 20 C 1.51115 * 124.61802 * 359.97438 * 16 14 13 21 21 C 1.53000 * 109.47353 * 240.00195 * 2 1 3 22 22 C 1.52999 * 117.50073 * 11.97442 * 21 2 1 23 23 C 1.52999 * 60.00287 * 252.51753 * 22 21 2 24 24 H 1.09003 * 109.46677 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46860 * 60.00168 * 1 2 3 26 26 H 1.08998 * 109.47091 * 300.00028 * 1 2 3 27 27 H 1.09004 * 109.47130 * 299.99666 * 3 2 1 28 28 H 1.08998 * 109.47175 * 60.00023 * 3 2 1 29 29 H 0.97008 * 119.99896 * 0.02562 * 4 3 2 30 30 H 0.97004 * 119.99927 * 180.02562 * 8 7 5 31 31 H 0.96998 * 119.99737 * 118.25715 * 13 2 1 32 32 H 1.08001 * 124.62554 * 359.97438 * 17 16 14 33 33 H 1.08993 * 110.52499 * 224.84784 * 18 17 16 34 34 H 1.09008 * 110.24715 * 102.61997 * 18 17 16 35 35 H 1.09004 * 110.97753 * 266.70942 * 19 18 17 36 36 H 1.09003 * 110.98522 * 142.91009 * 19 18 17 37 37 H 1.08994 * 110.36446 * 315.44543 * 20 16 14 38 38 H 1.09001 * 110.36048 * 77.76341 * 20 16 14 39 39 H 1.08998 * 115.55381 * 157.69128 * 21 2 1 40 40 H 1.09003 * 117.49258 * 0.02562 * 22 21 2 41 41 H 1.08995 * 117.49922 * 145.02203 * 22 21 2 42 42 H 1.09005 * 117.49365 * 252.51495 * 23 22 21 43 43 H 1.08996 * 117.50363 * 107.49013 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1897 2.6284 0.0002 6 1 3.6497 3.5638 -0.0002 7 6 5.5778 2.6284 0.0002 8 7 6.2359 1.4886 0.0012 9 14 6.5118 4.2462 0.0004 10 1 5.5468 5.3749 -0.0002 11 1 7.3654 4.3248 1.2130 12 1 7.3656 4.3249 -1.2120 13 7 2.0184 -0.6905 1.1962 14 6 1.7219 -0.2100 2.4199 15 8 0.9730 0.7413 2.5346 16 6 2.3042 -0.8362 3.6170 17 6 2.0803 -0.4358 4.8612 18 6 2.8312 -1.3019 5.8458 19 6 3.2308 -2.5613 5.0434 20 6 3.2438 -2.0195 3.5959 21 6 2.0400 -0.7212 -1.2492 22 6 1.0239 -1.0316 -2.3502 23 6 1.5720 -2.1604 -1.4746 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.9900 0.6025 0.0006 30 1 7.2059 1.4886 0.0016 31 1 2.5550 -1.4937 1.1074 32 1 1.4459 0.3947 5.1339 33 1 2.1887 -1.5736 6.6832 34 1 3.7202 -0.7824 6.2038 35 1 2.4866 -3.3495 5.1583 36 1 4.2194 -2.9140 5.3373 37 1 2.8816 -2.7791 2.9032 38 1 4.2488 -1.7009 3.3193 39 1 3.0545 -0.4679 -1.5571 40 1 -0.0079 -0.7217 -2.1845 41 1 1.3697 -0.9823 -3.3826 42 1 2.2784 -2.8536 -1.9312 43 1 0.9007 -2.5933 -0.7330 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665992316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:46 Heat of formation + Delta-G solvation = 15.346528 kcal Electronic energy + Delta-G solvation = -22659.910201 eV Core-core repulsion = 19513.364519 eV Total energy + Delta-G solvation = -3146.545683 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.12762 -38.46353 -37.05882 -34.59064 -33.37680 -31.27734 -29.88747 -28.92236 -28.07862 -25.80393 -23.78697 -22.41346 -22.01655 -21.74588 -20.71023 -18.66654 -18.36530 -17.10249 -17.06410 -15.73179 -15.54247 -15.19710 -14.67324 -14.41951 -14.24789 -13.66156 -13.14707 -12.87222 -12.72358 -12.47374 -12.28104 -12.06311 -11.94572 -11.80296 -11.55645 -11.39242 -11.19663 -11.12933 -11.01388 -10.79541 -10.75665 -10.70328 -10.13692 -10.02414 -9.76984 -9.62309 -9.24581 -8.80583 -8.72530 -8.44878 -6.79047 -5.69676 -2.95274 1.67429 3.45618 3.47697 3.53479 3.55728 3.79023 4.16969 4.57951 4.66151 4.66308 4.84785 4.98539 5.12395 5.17136 5.24490 5.36558 5.42490 5.52518 5.64288 5.66591 5.74395 5.76153 5.81083 5.81931 5.86802 5.97659 6.01491 6.11222 6.20980 6.26488 6.29527 6.32395 6.48106 6.52529 6.64228 6.70968 6.77287 6.98603 7.20043 7.79136 8.05428 8.50002 8.74570 9.61513 10.20255 10.56484 11.53606 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011052 B = 0.007076 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.919676 B = 3956.303363 C = 5514.713884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.202 3.798 3 C 0.143 3.857 4 N -0.725 5.725 5 C -0.227 4.227 6 H 0.069 0.931 7 C -0.017 4.017 8 N -0.936 5.936 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 N -0.704 5.704 14 C 0.574 3.426 15 O -0.540 6.540 16 C -0.180 4.180 17 C -0.088 4.088 18 C -0.105 4.105 19 C -0.122 4.122 20 C -0.092 4.092 21 C -0.150 4.150 22 C -0.173 4.173 23 C -0.184 4.184 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.024 0.976 28 H 0.045 0.955 29 H 0.382 0.618 30 H 0.252 0.748 31 H 0.397 0.603 32 H 0.135 0.865 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.122 0.878 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.520 -11.742 4.993 15.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.116 3.884 3 C 0.015 3.985 4 N -0.370 5.370 5 C -0.359 4.359 6 H 0.087 0.913 7 C -0.212 4.212 8 N -0.586 5.586 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.221 1.221 12 H -0.220 1.220 13 N -0.354 5.354 14 C 0.362 3.638 15 O -0.419 6.419 16 C -0.183 4.183 17 C -0.108 4.108 18 C -0.141 4.141 19 C -0.159 4.159 20 C -0.129 4.129 21 C -0.168 4.168 22 C -0.210 4.210 23 C -0.221 4.221 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.042 0.958 28 H 0.063 0.937 29 H 0.216 0.784 30 H 0.062 0.938 31 H 0.231 0.769 32 H 0.153 0.847 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.140 0.860 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.012 -10.866 5.048 15.614 hybrid contribution 1.211 0.317 -0.149 1.260 sum -8.801 -10.549 4.899 14.586 Atomic orbital electron populations 1.22295 0.94860 1.01500 1.03452 1.20016 0.93015 0.93154 0.82183 1.21058 0.86462 0.91745 0.99233 1.42244 0.99187 1.06178 1.89342 1.19293 0.89028 0.86259 1.41319 0.91345 1.24669 0.96284 0.96661 1.03614 1.69659 1.06474 1.23684 1.58756 0.86142 0.79914 0.83333 0.77042 1.20643 1.22055 1.22026 1.45802 1.54713 1.29882 1.04994 1.17772 0.80435 0.82742 0.82871 1.90699 1.36804 1.27722 1.86691 1.21905 1.01659 1.00636 0.94061 1.23919 0.95670 0.97488 0.93714 1.21438 0.99832 0.95232 0.97643 1.22409 1.01769 0.97102 0.94656 1.21260 0.99316 0.94925 0.97438 1.22582 1.00779 0.96796 0.96663 1.23045 0.99208 1.02860 0.95906 1.22937 1.04018 0.91627 1.03487 0.93064 0.91739 0.90231 0.95847 0.93700 0.78399 0.93841 0.76911 0.84709 0.90677 0.89853 0.91155 0.90680 0.91158 0.89634 0.85990 0.88264 0.88915 0.88947 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 7.06 37.16 0.26 -2.23 16 2 C 0.20 3.48 0.54 -131.82 -0.07 3.41 16 3 C 0.14 3.16 4.94 -4.04 -0.02 3.14 16 4 N -0.73 -18.76 5.03 -59.91 -0.30 -19.06 16 5 C -0.23 -6.60 9.99 -15.06 -0.15 -6.75 16 6 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 7 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 8 N -0.94 -28.38 13.06 55.49 0.72 -27.65 16 9 Si 0.90 23.12 29.55 -169.99 -5.02 18.09 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 12 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 13 N -0.70 -11.75 4.71 -48.77 -0.23 -11.98 16 14 C 0.57 10.49 7.20 -12.66 -0.09 10.40 16 15 O -0.54 -11.45 13.00 5.26 0.07 -11.38 16 16 C -0.18 -2.77 6.09 -102.72 -0.63 -3.39 16 17 C -0.09 -1.23 10.43 -36.01 -0.38 -1.60 16 18 C -0.10 -1.11 6.80 -26.85 -0.18 -1.29 16 19 C -0.12 -1.21 7.16 -25.08 -0.18 -1.39 16 20 C -0.09 -1.15 6.06 -26.86 -0.16 -1.31 16 21 C -0.15 -2.35 4.87 -90.62 -0.44 -2.79 16 22 C -0.17 -2.23 9.62 -26.73 -0.26 -2.49 16 23 C -0.18 -2.26 9.71 -26.73 -0.26 -2.52 16 24 H 0.05 0.69 7.00 -51.93 -0.36 0.33 16 25 H 0.06 0.91 6.82 -51.93 -0.35 0.55 16 26 H 0.08 1.38 6.12 -51.93 -0.32 1.06 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 1.11 6.22 -51.93 -0.32 0.79 16 29 H 0.38 10.12 6.63 -40.82 -0.27 9.85 16 30 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.40 5.87 7.36 -40.82 -0.30 5.57 16 32 H 0.14 1.90 8.03 -52.49 -0.42 1.48 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.87 8.14 -51.92 -0.42 0.44 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.76 7.77 -51.93 -0.40 0.36 16 38 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.12 2.29 7.09 -51.93 -0.37 1.92 16 40 H 0.10 1.19 5.87 -51.93 -0.31 0.89 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.09 1.05 7.39 -51.93 -0.38 0.67 16 LS Contribution 340.22 15.07 5.13 5.13 Total: -1.00 -32.69 340.22 -9.02 -41.71 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -6.74 Total: 14.54 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -2.65 Total: -9.40 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.19 Total: -58.70 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.07 Total: -11.38 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.69 -9.02 -41.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665992316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.059 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds