Wall clock time and date at job start Tue Mar 31 2020 01:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47094 * 2 1 4 4 N 1.46498 * 109.47359 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00463 * 179.97438 * 4 3 2 6 6 H 1.08005 * 120.00104 * 0.02562 * 5 4 3 7 7 C 1.38815 * 120.00297 * 180.02562 * 5 4 3 8 8 N 1.31614 * 119.99850 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00046 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46858 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.46896 * 119.99560 * 9 7 5 12 12 H 1.48495 * 109.46907 * 239.99949 * 9 7 5 13 13 N 1.46501 * 109.47232 * 119.99691 * 2 1 3 14 14 C 1.34772 * 120.00037 * 298.26697 * 13 2 1 15 15 O 1.21615 * 120.00034 * 5.11962 * 14 13 2 16 16 C 1.47106 * 120.00048 * 185.12924 * 14 13 2 17 17 C 1.32608 * 124.62020 * 179.69697 * 16 14 13 18 18 C 1.51111 * 110.75806 * 179.84000 * 17 16 14 19 19 C 1.54579 * 104.90305 * 343.80763 * 18 17 16 20 20 C 1.51115 * 124.61802 * 359.97438 * 16 14 13 21 21 C 1.53000 * 109.47353 * 240.00195 * 2 1 3 22 22 C 1.52999 * 117.50073 * 11.97442 * 21 2 1 23 23 C 1.52999 * 60.00287 * 252.51753 * 22 21 2 24 24 H 1.09003 * 109.46677 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46860 * 60.00168 * 1 2 3 26 26 H 1.08998 * 109.47091 * 300.00028 * 1 2 3 27 27 H 1.09004 * 109.47130 * 299.99666 * 3 2 1 28 28 H 1.08998 * 109.47175 * 60.00023 * 3 2 1 29 29 H 0.97008 * 119.99896 * 0.02562 * 4 3 2 30 30 H 0.97004 * 119.99927 * 180.02562 * 8 7 5 31 31 H 0.96998 * 119.99737 * 118.25715 * 13 2 1 32 32 H 1.08001 * 124.62554 * 359.97438 * 17 16 14 33 33 H 1.08993 * 110.52499 * 224.84784 * 18 17 16 34 34 H 1.09008 * 110.24715 * 102.61997 * 18 17 16 35 35 H 1.09004 * 110.97753 * 266.70942 * 19 18 17 36 36 H 1.09003 * 110.98522 * 142.91009 * 19 18 17 37 37 H 1.08994 * 110.36446 * 315.44543 * 20 16 14 38 38 H 1.09001 * 110.36048 * 77.76341 * 20 16 14 39 39 H 1.08998 * 115.55381 * 157.69128 * 21 2 1 40 40 H 1.09003 * 117.49258 * 0.02562 * 22 21 2 41 41 H 1.08995 * 117.49922 * 145.02203 * 22 21 2 42 42 H 1.09005 * 117.49365 * 252.51495 * 23 22 21 43 43 H 1.08996 * 117.50363 * 107.49013 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1897 2.6284 0.0002 6 1 3.6497 3.5638 -0.0002 7 6 5.5778 2.6284 0.0002 8 7 6.2359 1.4886 0.0012 9 14 6.5118 4.2462 0.0004 10 1 5.5468 5.3749 -0.0002 11 1 7.3654 4.3248 1.2130 12 1 7.3656 4.3249 -1.2120 13 7 2.0184 -0.6905 1.1962 14 6 1.7219 -0.2100 2.4199 15 8 0.9730 0.7413 2.5346 16 6 2.3042 -0.8362 3.6170 17 6 2.0803 -0.4358 4.8612 18 6 2.8312 -1.3019 5.8458 19 6 3.2308 -2.5613 5.0434 20 6 3.2438 -2.0195 3.5959 21 6 2.0400 -0.7212 -1.2492 22 6 1.0239 -1.0316 -2.3502 23 6 1.5720 -2.1604 -1.4746 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.9900 0.6025 0.0006 30 1 7.2059 1.4886 0.0016 31 1 2.5550 -1.4937 1.1074 32 1 1.4459 0.3947 5.1339 33 1 2.1887 -1.5736 6.6832 34 1 3.7202 -0.7824 6.2038 35 1 2.4866 -3.3495 5.1583 36 1 4.2194 -2.9140 5.3373 37 1 2.8816 -2.7791 2.9032 38 1 4.2488 -1.7009 3.3193 39 1 3.0545 -0.4679 -1.5571 40 1 -0.0079 -0.7217 -2.1845 41 1 1.3697 -0.9823 -3.3826 42 1 2.2784 -2.8536 -1.9312 43 1 0.9007 -2.5933 -0.7330 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665992316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:44 Heat of formation + Delta-G solvation = -5.394488 kcal Electronic energy + Delta-G solvation = -22660.809599 eV Core-core repulsion = 19513.364519 eV Total energy + Delta-G solvation = -3147.445081 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.48112 -39.59992 -38.26608 -36.37630 -34.99607 -33.11682 -31.48585 -29.98579 -29.08081 -27.59597 -25.32427 -24.22358 -23.22926 -22.87972 -21.64300 -20.13069 -19.58883 -19.22716 -18.22186 -16.99736 -16.87537 -16.47881 -16.27713 -15.98458 -15.64022 -15.27593 -14.98027 -14.29095 -13.87452 -13.75313 -13.66141 -13.56543 -13.25134 -13.09179 -12.87688 -12.83984 -12.56868 -12.47781 -12.22157 -12.06363 -12.04827 -12.00816 -11.96265 -11.77665 -11.25053 -11.08683 -10.93738 -10.55784 -10.02767 -9.74912 -8.95996 -7.96569 -5.22838 0.46972 1.42588 1.43268 1.53565 2.16827 2.46064 2.53901 3.04570 3.35611 3.56202 3.64045 3.68796 3.88017 3.94621 4.13320 4.17222 4.22519 4.24456 4.34640 4.45462 4.62212 4.76882 4.80509 4.84757 4.85442 4.89115 4.89676 4.96994 4.99833 5.01934 5.10909 5.17959 5.27564 5.31964 5.37683 5.42261 5.44080 5.47769 5.60483 5.70647 6.25839 6.71761 7.32949 7.37118 8.07413 8.36563 9.26454 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011052 B = 0.007076 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.919676 B = 3956.303363 C = 5514.713884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.209 3.791 3 C 0.145 3.855 4 N -0.728 5.728 5 C -0.245 4.245 6 H 0.062 0.938 7 C -0.069 4.069 8 N -0.961 5.961 9 Si 0.969 3.031 10 H -0.274 1.274 11 H -0.292 1.292 12 H -0.288 1.288 13 N -0.697 5.697 14 C 0.561 3.439 15 O -0.580 6.580 16 C -0.212 4.212 17 C -0.082 4.082 18 C -0.101 4.101 19 C -0.113 4.113 20 C -0.089 4.089 21 C -0.177 4.177 22 C -0.162 4.162 23 C -0.155 4.155 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.020 0.980 28 H 0.016 0.984 29 H 0.377 0.623 30 H 0.251 0.749 31 H 0.406 0.594 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.873 -13.481 5.277 17.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.123 3.877 3 C 0.017 3.983 4 N -0.371 5.371 5 C -0.377 4.377 6 H 0.080 0.920 7 C -0.261 4.261 8 N -0.612 5.612 9 Si 0.798 3.202 10 H -0.199 1.199 11 H -0.219 1.219 12 H -0.215 1.215 13 N -0.347 5.347 14 C 0.351 3.649 15 O -0.463 6.463 16 C -0.215 4.215 17 C -0.101 4.101 18 C -0.138 4.138 19 C -0.150 4.150 20 C -0.126 4.126 21 C -0.196 4.196 22 C -0.199 4.199 23 C -0.192 4.192 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.034 0.966 29 H 0.210 0.790 30 H 0.060 0.940 31 H 0.242 0.758 32 H 0.142 0.858 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.131 0.869 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.376 -12.627 5.319 17.188 hybrid contribution 1.285 0.913 -0.225 1.592 sum -9.091 -11.714 5.095 15.679 Atomic orbital electron populations 1.22203 0.92990 1.02967 1.02926 1.19851 0.94194 0.90325 0.83293 1.21081 0.84439 0.95380 0.97386 1.42285 1.00629 1.05087 1.89070 1.19576 0.89739 0.87109 1.41249 0.92015 1.25430 0.96991 0.99988 1.03741 1.69793 1.06508 1.25443 1.59480 0.85142 0.78453 0.79706 0.76893 1.19883 1.21936 1.21458 1.45784 1.54382 1.29894 1.04595 1.18378 0.80004 0.82402 0.84082 1.90670 1.38706 1.29528 1.87350 1.22050 1.03492 1.02611 0.93316 1.24280 0.94562 0.96937 0.94370 1.21520 0.99890 0.94857 0.97545 1.22432 1.03319 0.97013 0.92247 1.21266 0.97329 0.94136 0.99895 1.22255 0.99918 1.00195 0.97278 1.23181 0.98921 1.02207 0.95568 1.23030 1.03398 0.89935 1.02853 0.90464 0.90441 0.92580 0.96261 0.96648 0.78953 0.93998 0.75844 0.85781 0.88047 0.89413 0.89279 0.89093 0.89645 0.91574 0.89568 0.86939 0.88148 0.87613 0.87493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.58 7.06 71.98 0.51 -4.07 16 2 C 0.21 7.31 0.54 3.60 0.00 7.31 16 3 C 0.14 6.69 4.94 86.38 0.43 7.11 16 4 N -0.73 -39.15 5.03 -343.45 -1.73 -40.88 16 5 C -0.24 -14.61 9.99 84.04 0.84 -13.77 16 6 H 0.06 3.68 7.83 -2.91 -0.02 3.66 16 7 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 8 N -0.96 -59.23 13.06 21.65 0.28 -58.94 16 9 Si 0.97 48.10 29.55 68.60 2.03 50.13 16 10 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 12 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 13 N -0.70 -23.64 4.71 -426.48 -2.01 -25.65 16 14 C 0.56 21.21 7.20 86.57 0.62 21.83 16 15 O -0.58 -25.85 13.00 -4.08 -0.05 -25.90 16 16 C -0.21 -6.57 6.09 -18.56 -0.11 -6.68 16 17 C -0.08 -2.25 10.43 24.66 0.26 -2.00 16 18 C -0.10 -1.92 6.80 30.52 0.21 -1.72 16 19 C -0.11 -1.94 7.16 31.66 0.23 -1.71 16 20 C -0.09 -2.13 6.06 30.51 0.18 -1.94 16 21 C -0.18 -5.49 4.87 -10.79 -0.05 -5.54 16 22 C -0.16 -3.80 9.62 30.59 0.29 -3.51 16 23 C -0.16 -3.41 9.71 30.60 0.30 -3.11 16 24 H 0.08 1.90 7.00 -2.39 -0.02 1.89 16 25 H 0.08 2.09 6.82 -2.38 -0.02 2.07 16 26 H 0.06 1.98 6.12 -2.39 -0.01 1.96 16 27 H 0.02 0.90 8.14 -2.38 -0.02 0.89 16 28 H 0.02 0.81 6.22 -2.39 -0.01 0.80 16 29 H 0.38 20.80 6.63 -92.70 -0.61 20.18 16 30 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.41 12.01 7.36 -92.71 -0.68 11.33 16 32 H 0.12 3.60 8.03 -2.91 -0.02 3.58 16 33 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.72 7.77 -2.39 -0.02 1.70 16 38 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.09 3.33 7.09 -2.39 -0.02 3.31 16 40 H 0.11 2.36 5.87 -2.39 -0.01 2.35 16 41 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 43 H 0.11 2.06 7.39 -2.39 -0.02 2.04 16 Total: -1.00 -73.01 340.22 2.41 -70.60 By element: Atomic # 1 Polarization: 42.35 SS G_CDS: -0.28 Total: 42.07 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 4.17 Total: -11.42 kcal Atomic # 7 Polarization: -122.02 SS G_CDS: -3.46 Total: -125.47 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.05 Total: -25.90 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -73.01 2.41 -70.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665992316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.202 kcal (2) G-P(sol) polarization free energy of solvation -73.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds