Wall clock time and date at job start Tue Mar 31 2020 01:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47196 * 2 1 4 4 N 1.46503 * 109.47125 * 300.00003 * 3 2 1 5 5 C 1.36932 * 120.00219 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00180 * 359.97438 * 5 4 3 7 7 C 1.38810 * 119.99966 * 179.97438 * 5 4 3 8 8 N 1.31623 * 120.00156 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99990 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46862 * 89.99974 * 9 7 5 11 11 H 1.48496 * 109.47290 * 210.00098 * 9 7 5 12 12 H 1.48503 * 109.46992 * 330.00130 * 9 7 5 13 13 N 1.46496 * 109.47224 * 239.99753 * 2 1 3 14 14 C 1.34772 * 120.00358 * 183.94575 * 13 2 1 15 15 O 1.21620 * 119.99962 * 5.19088 * 14 13 2 16 16 C 1.47101 * 120.00393 * 185.19504 * 14 13 2 17 17 C 1.32613 * 124.61830 * 179.69825 * 16 14 13 18 18 C 1.51114 * 110.75504 * 179.84143 * 17 16 14 19 19 C 1.54577 * 104.90245 * 343.80349 * 18 17 16 20 20 C 1.51106 * 124.61963 * 359.97438 * 16 14 13 21 21 C 1.53001 * 109.47091 * 119.99656 * 2 1 3 22 22 C 1.52998 * 117.51665 * 348.45718 * 21 2 1 23 23 C 1.52998 * 60.00493 * 107.47865 * 22 21 2 24 24 H 1.09003 * 109.46770 * 300.00433 * 1 2 3 25 25 H 1.09001 * 109.46686 * 60.00184 * 1 2 3 26 26 H 1.08998 * 109.47076 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47329 * 59.99617 * 3 2 1 28 28 H 1.08994 * 109.47246 * 179.97438 * 3 2 1 29 29 H 0.97003 * 119.99504 * 359.97438 * 4 3 2 30 30 H 0.97004 * 119.99797 * 180.02562 * 8 7 5 31 31 H 0.97001 * 119.99662 * 3.93997 * 13 2 1 32 32 H 1.07995 * 124.62587 * 0.02562 * 17 16 14 33 33 H 1.08997 * 110.52059 * 224.85275 * 18 17 16 34 34 H 1.09003 * 110.15421 * 102.57152 * 18 17 16 35 35 H 1.09000 * 110.98757 * 266.70872 * 19 18 17 36 36 H 1.09002 * 110.98613 * 142.91284 * 19 18 17 37 37 H 1.09006 * 110.36442 * 315.44082 * 20 16 14 38 38 H 1.09002 * 110.36558 * 77.65254 * 20 16 14 39 39 H 1.09000 * 115.55170 * 202.75367 * 21 2 1 40 40 H 1.09005 * 117.50338 * 214.97076 * 22 21 2 41 41 H 1.08997 * 117.50423 * 359.97438 * 22 21 2 42 42 H 1.08997 * 117.50018 * 252.51133 * 23 22 21 43 43 H 1.08999 * 117.50154 * 107.48182 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5517 2.1331 -1.1962 5 6 1.8830 3.4439 -1.4132 6 1 2.5039 3.9688 -0.7023 7 6 1.4207 4.0981 -2.5469 8 7 0.6635 3.4585 -3.4130 9 14 1.8719 5.8865 -2.8425 10 1 3.1350 5.9562 -3.6204 11 1 0.7845 6.5521 -3.6037 12 1 2.0552 6.5729 -1.5385 13 7 2.0184 -0.6906 -1.1961 14 6 3.3408 -0.8838 -1.3701 15 8 4.1219 -0.5702 -0.4921 16 6 3.8396 -1.4739 -2.6218 17 6 5.1184 -1.6987 -2.8916 18 6 5.2761 -2.3165 -4.2616 19 6 3.8636 -2.8213 -4.6350 20 6 2.9652 -1.9010 -3.7778 21 6 2.0401 -0.7212 1.2493 22 6 1.0222 -1.0408 2.3460 23 6 1.5801 -2.1638 1.4694 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6767 1.9564 0.8900 28 1 3.1300 1.4425 0.0005 29 1 0.9943 1.6615 -1.8349 30 1 0.3408 3.9156 -4.2054 31 1 1.3899 -1.0090 -1.8629 32 1 5.9355 -1.4739 -2.2222 33 1 5.9793 -3.1486 -4.2269 34 1 5.6115 -1.5648 -4.9762 35 1 3.7348 -3.8660 -4.3518 36 1 3.6666 -2.6796 -5.6977 37 1 2.0969 -2.4505 -3.4138 38 1 2.6488 -1.0324 -4.3553 39 1 3.0518 -0.4623 1.5615 40 1 1.3643 -0.9921 3.3799 41 1 -0.0109 -0.7369 2.1779 42 1 0.9140 -2.5989 0.7245 43 1 2.2894 -2.8539 1.9264 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665992317.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:51 Heat of formation + Delta-G solvation = 14.920777 kcal Electronic energy + Delta-G solvation = -22638.871614 eV Core-core repulsion = 19492.307470 eV Total energy + Delta-G solvation = -3146.564145 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.11073 -38.43518 -36.89777 -34.90271 -33.35618 -31.28216 -29.61653 -28.93504 -28.07845 -26.10464 -23.85064 -22.58713 -21.93425 -21.30472 -20.79765 -18.65529 -18.41257 -17.21510 -16.96881 -15.94539 -15.50028 -15.17539 -14.48927 -14.40779 -14.28331 -13.74862 -13.14889 -12.82826 -12.78434 -12.62803 -12.30150 -12.03399 -11.87065 -11.80621 -11.56526 -11.25421 -11.18313 -11.14162 -11.01575 -10.86085 -10.77706 -10.56148 -10.21027 -10.10543 -9.84294 -9.60784 -9.22764 -8.81309 -8.75909 -8.44790 -6.82247 -5.71572 -2.97528 1.67247 3.46928 3.51119 3.52375 3.54086 3.77257 4.20504 4.57658 4.61919 4.66228 4.87642 4.98394 5.14827 5.17348 5.27997 5.37187 5.42467 5.51832 5.64742 5.66313 5.71804 5.76107 5.80595 5.81326 5.83965 5.96774 5.99297 6.06525 6.20759 6.26543 6.28062 6.33029 6.47388 6.58093 6.62588 6.67595 6.71716 6.96303 7.16788 7.76890 8.04296 8.48217 8.75680 9.59615 10.17750 10.53828 11.51698 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011547 B = 0.006866 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.268815 B = 4076.900245 C = 5762.947549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.200 3.800 3 C 0.146 3.854 4 N -0.726 5.726 5 C -0.230 4.230 6 H 0.068 0.932 7 C -0.016 4.016 8 N -0.936 5.936 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 N -0.704 5.704 14 C 0.575 3.425 15 O -0.540 6.540 16 C -0.179 4.179 17 C -0.090 4.090 18 C -0.104 4.104 19 C -0.122 4.122 20 C -0.092 4.092 21 C -0.140 4.140 22 C -0.184 4.184 23 C -0.175 4.175 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.025 0.975 28 H 0.038 0.962 29 H 0.382 0.618 30 H 0.253 0.747 31 H 0.396 0.604 32 H 0.135 0.865 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.266 -15.699 2.146 16.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.115 3.885 3 C 0.018 3.982 4 N -0.370 5.370 5 C -0.361 4.361 6 H 0.086 0.914 7 C -0.211 4.211 8 N -0.586 5.586 9 Si 0.736 3.264 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.208 1.208 13 N -0.354 5.354 14 C 0.363 3.637 15 O -0.419 6.419 16 C -0.182 4.182 17 C -0.109 4.109 18 C -0.141 4.141 19 C -0.159 4.159 20 C -0.130 4.130 21 C -0.160 4.160 22 C -0.221 4.221 23 C -0.212 4.212 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.216 0.784 30 H 0.063 0.937 31 H 0.230 0.770 32 H 0.152 0.848 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.133 0.867 40 H 0.108 0.892 41 H 0.118 0.882 42 H 0.107 0.893 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.858 -15.272 2.798 15.787 hybrid contribution -0.201 0.841 -0.783 1.166 sum 2.657 -14.432 2.015 14.812 Atomic orbital electron populations 1.22129 0.93638 1.01258 1.04173 1.20014 0.93415 0.92335 0.82763 1.20999 0.97845 0.88287 0.91056 1.42254 1.61242 1.10452 1.23066 1.19242 1.24941 0.87655 1.04269 0.91375 1.24670 1.00803 0.98168 0.97493 1.69648 1.39784 1.36045 1.13127 0.86208 0.77359 0.85136 0.77651 1.21900 1.21873 1.20833 1.45840 1.06931 1.59071 1.23545 1.17750 0.82319 0.77652 0.86003 1.90714 1.56093 1.51600 1.43473 1.21918 0.96444 1.04190 0.95648 1.23916 0.96520 0.94348 0.96137 1.21438 0.97951 1.00125 0.94617 1.22406 0.94390 0.99164 0.99972 1.21262 0.97701 0.99670 0.94332 1.22597 0.99766 0.97174 0.96450 1.23140 0.99519 1.03583 0.95882 1.22780 1.03655 0.91704 1.03041 0.90700 0.90654 0.92893 0.95690 0.94455 0.78422 0.93745 0.76987 0.84752 0.90679 0.89882 0.91153 0.90680 0.91162 0.89612 0.86696 0.89250 0.88217 0.89286 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 7.04 37.16 0.26 -2.08 16 2 C 0.20 3.43 0.54 -131.82 -0.07 3.36 16 3 C 0.15 3.20 5.02 -4.04 -0.02 3.18 16 4 N -0.73 -18.58 5.17 -59.91 -0.31 -18.89 16 5 C -0.23 -6.61 9.99 -15.06 -0.15 -6.76 16 6 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 7 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 8 N -0.94 -28.18 13.06 55.49 0.72 -27.45 16 9 Si 0.90 22.96 29.55 -169.99 -5.02 17.93 16 10 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 11 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 13 N -0.70 -11.65 4.70 -48.78 -0.23 -11.88 16 14 C 0.57 10.40 7.20 -12.67 -0.09 10.31 16 15 O -0.54 -11.32 13.58 5.26 0.07 -11.24 16 16 C -0.18 -2.73 6.09 -102.73 -0.63 -3.36 16 17 C -0.09 -1.23 10.43 -36.01 -0.38 -1.61 16 18 C -0.10 -1.10 6.80 -26.85 -0.18 -1.28 16 19 C -0.12 -1.21 7.16 -25.08 -0.18 -1.39 16 20 C -0.09 -1.15 6.06 -26.86 -0.16 -1.31 16 21 C -0.14 -2.19 4.05 -90.62 -0.37 -2.56 16 22 C -0.18 -2.34 9.61 -26.73 -0.26 -2.60 16 23 C -0.17 -2.26 9.81 -26.73 -0.26 -2.53 16 24 H 0.07 1.10 6.84 -51.93 -0.36 0.75 16 25 H 0.07 1.30 6.86 -51.93 -0.36 0.94 16 26 H 0.05 0.67 7.01 -51.93 -0.36 0.30 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.92 6.64 -51.93 -0.34 0.57 16 29 H 0.38 9.95 6.35 -40.82 -0.26 9.69 16 30 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.40 5.79 7.46 -40.82 -0.30 5.48 16 32 H 0.13 1.87 8.03 -52.49 -0.42 1.45 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.76 7.77 -51.93 -0.40 0.36 16 38 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.12 2.05 7.17 -51.93 -0.37 1.68 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.10 1.20 5.87 -51.93 -0.31 0.89 16 42 H 0.09 1.09 7.42 -51.93 -0.39 0.71 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 341.40 15.07 5.14 5.14 Total: -1.00 -32.55 341.40 -9.00 -41.55 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -6.80 Total: 14.02 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -2.58 Total: -9.18 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.19 Total: -58.22 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.07 Total: -11.24 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.55 -9.00 -41.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665992317.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.471 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds