Wall clock time and date at job start Tue Mar 31 2020 01:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47196 * 2 1 4 4 N 1.46503 * 109.47125 * 300.00003 * 3 2 1 5 5 C 1.36932 * 120.00219 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00180 * 359.97438 * 5 4 3 7 7 C 1.38810 * 119.99966 * 179.97438 * 5 4 3 8 8 N 1.31623 * 120.00156 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99990 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46862 * 89.99974 * 9 7 5 11 11 H 1.48496 * 109.47290 * 210.00098 * 9 7 5 12 12 H 1.48503 * 109.46992 * 330.00130 * 9 7 5 13 13 N 1.46496 * 109.47224 * 239.99753 * 2 1 3 14 14 C 1.34772 * 120.00358 * 183.94575 * 13 2 1 15 15 O 1.21620 * 119.99962 * 5.19088 * 14 13 2 16 16 C 1.47101 * 120.00393 * 185.19504 * 14 13 2 17 17 C 1.32613 * 124.61830 * 179.69825 * 16 14 13 18 18 C 1.51114 * 110.75504 * 179.84143 * 17 16 14 19 19 C 1.54577 * 104.90245 * 343.80349 * 18 17 16 20 20 C 1.51106 * 124.61963 * 359.97438 * 16 14 13 21 21 C 1.53001 * 109.47091 * 119.99656 * 2 1 3 22 22 C 1.52998 * 117.51665 * 348.45718 * 21 2 1 23 23 C 1.52998 * 60.00493 * 107.47865 * 22 21 2 24 24 H 1.09003 * 109.46770 * 300.00433 * 1 2 3 25 25 H 1.09001 * 109.46686 * 60.00184 * 1 2 3 26 26 H 1.08998 * 109.47076 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47329 * 59.99617 * 3 2 1 28 28 H 1.08994 * 109.47246 * 179.97438 * 3 2 1 29 29 H 0.97003 * 119.99504 * 359.97438 * 4 3 2 30 30 H 0.97004 * 119.99797 * 180.02562 * 8 7 5 31 31 H 0.97001 * 119.99662 * 3.93997 * 13 2 1 32 32 H 1.07995 * 124.62587 * 0.02562 * 17 16 14 33 33 H 1.08997 * 110.52059 * 224.85275 * 18 17 16 34 34 H 1.09003 * 110.15421 * 102.57152 * 18 17 16 35 35 H 1.09000 * 110.98757 * 266.70872 * 19 18 17 36 36 H 1.09002 * 110.98613 * 142.91284 * 19 18 17 37 37 H 1.09006 * 110.36442 * 315.44082 * 20 16 14 38 38 H 1.09002 * 110.36558 * 77.65254 * 20 16 14 39 39 H 1.09000 * 115.55170 * 202.75367 * 21 2 1 40 40 H 1.09005 * 117.50338 * 214.97076 * 22 21 2 41 41 H 1.08997 * 117.50423 * 359.97438 * 22 21 2 42 42 H 1.08997 * 117.50018 * 252.51133 * 23 22 21 43 43 H 1.08999 * 117.50154 * 107.48182 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5517 2.1331 -1.1962 5 6 1.8830 3.4439 -1.4132 6 1 2.5039 3.9688 -0.7023 7 6 1.4207 4.0981 -2.5469 8 7 0.6635 3.4585 -3.4130 9 14 1.8719 5.8865 -2.8425 10 1 3.1350 5.9562 -3.6204 11 1 0.7845 6.5521 -3.6037 12 1 2.0552 6.5729 -1.5385 13 7 2.0184 -0.6906 -1.1961 14 6 3.3408 -0.8838 -1.3701 15 8 4.1219 -0.5702 -0.4921 16 6 3.8396 -1.4739 -2.6218 17 6 5.1184 -1.6987 -2.8916 18 6 5.2761 -2.3165 -4.2616 19 6 3.8636 -2.8213 -4.6350 20 6 2.9652 -1.9010 -3.7778 21 6 2.0401 -0.7212 1.2493 22 6 1.0222 -1.0408 2.3460 23 6 1.5801 -2.1638 1.4694 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6767 1.9564 0.8900 28 1 3.1300 1.4425 0.0005 29 1 0.9943 1.6615 -1.8349 30 1 0.3408 3.9156 -4.2054 31 1 1.3899 -1.0090 -1.8629 32 1 5.9355 -1.4739 -2.2222 33 1 5.9793 -3.1486 -4.2269 34 1 5.6115 -1.5648 -4.9762 35 1 3.7348 -3.8660 -4.3518 36 1 3.6666 -2.6796 -5.6977 37 1 2.0969 -2.4505 -3.4138 38 1 2.6488 -1.0324 -4.3553 39 1 3.0518 -0.4623 1.5615 40 1 1.3643 -0.9921 3.3799 41 1 -0.0109 -0.7369 2.1779 42 1 0.9140 -2.5989 0.7245 43 1 2.2894 -2.8539 1.9264 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665992317.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:49 Heat of formation + Delta-G solvation = -5.624009 kcal Electronic energy + Delta-G solvation = -22639.762503 eV Core-core repulsion = 19492.307470 eV Total energy + Delta-G solvation = -3147.455033 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.44848 -39.55631 -38.12738 -36.60275 -35.02838 -33.13335 -31.16719 -30.02036 -29.08199 -27.76667 -25.68902 -23.92217 -23.01659 -22.85882 -21.72578 -20.05281 -19.70833 -19.20802 -18.12635 -17.24659 -16.83360 -16.44972 -16.27847 -15.82643 -15.61567 -15.27462 -14.99725 -14.50436 -13.92708 -13.67345 -13.57735 -13.52291 -13.29964 -12.98317 -12.86487 -12.82080 -12.57598 -12.45506 -12.17467 -12.11047 -12.03636 -12.02165 -11.96772 -11.73710 -11.36814 -11.04787 -10.98323 -10.53150 -10.01600 -9.74355 -8.97606 -7.96313 -5.22946 0.47834 1.43768 1.45267 1.53766 2.22442 2.45453 2.54207 3.08031 3.36318 3.51956 3.62646 3.69934 3.93579 4.02749 4.14819 4.19180 4.22691 4.26157 4.34023 4.35347 4.52337 4.75500 4.79193 4.84959 4.87468 4.88321 4.91868 4.97827 4.99248 5.01082 5.12949 5.18003 5.28463 5.29736 5.36787 5.38930 5.45196 5.46292 5.60223 5.70351 6.26185 6.71888 7.33597 7.39821 8.06714 8.36609 9.26455 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011547 B = 0.006866 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.268815 B = 4076.900245 C = 5762.947549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.208 3.792 3 C 0.149 3.851 4 N -0.728 5.728 5 C -0.247 4.247 6 H 0.062 0.938 7 C -0.066 4.066 8 N -0.961 5.961 9 Si 0.968 3.032 10 H -0.291 1.291 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.697 5.697 14 C 0.563 3.437 15 O -0.580 6.580 16 C -0.211 4.211 17 C -0.083 4.083 18 C -0.101 4.101 19 C -0.113 4.113 20 C -0.089 4.089 21 C -0.167 4.167 22 C -0.165 4.165 23 C -0.157 4.157 24 H 0.081 0.919 25 H 0.052 0.948 26 H 0.087 0.913 27 H 0.022 0.978 28 H 0.004 0.996 29 H 0.378 0.622 30 H 0.252 0.748 31 H 0.405 0.595 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.587 -17.200 1.698 17.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.122 3.878 3 C 0.022 3.978 4 N -0.371 5.371 5 C -0.379 4.379 6 H 0.080 0.920 7 C -0.259 4.259 8 N -0.611 5.611 9 Si 0.797 3.203 10 H -0.218 1.218 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.347 5.347 14 C 0.353 3.647 15 O -0.462 6.462 16 C -0.214 4.214 17 C -0.103 4.103 18 C -0.138 4.138 19 C -0.150 4.150 20 C -0.126 4.126 21 C -0.187 4.187 22 C -0.202 4.202 23 C -0.195 4.195 24 H 0.100 0.900 25 H 0.071 0.929 26 H 0.105 0.895 27 H 0.040 0.960 28 H 0.022 0.978 29 H 0.212 0.788 30 H 0.061 0.939 31 H 0.241 0.759 32 H 0.142 0.858 33 H 0.119 0.881 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.120 0.880 41 H 0.131 0.869 42 H 0.121 0.879 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.163 -16.791 2.357 17.094 hybrid contribution 0.101 1.318 -0.591 1.448 sum 2.264 -15.473 1.766 15.737 Atomic orbital electron populations 1.22067 0.91673 1.03206 1.03348 1.19848 0.94626 0.89441 0.83903 1.21010 0.95836 0.91545 0.89446 1.42300 1.61058 1.09758 1.24029 1.19528 1.24878 0.89119 1.04419 0.92039 1.25417 1.01061 1.02128 0.97326 1.69777 1.40550 1.37435 1.13363 0.85222 0.76890 0.80484 0.77658 1.21808 1.21446 1.19947 1.45811 1.06851 1.58386 1.23669 1.18340 0.82461 0.77247 0.86650 1.90687 1.56997 1.53470 1.45046 1.22056 0.97781 1.05900 0.95638 1.24272 0.95725 0.92714 0.97547 1.21519 0.99217 1.00855 0.92186 1.22429 0.92867 0.99398 1.00340 1.21265 0.98359 0.99667 0.93357 1.22314 0.99286 0.99879 0.97212 1.23262 0.99197 1.02068 0.95718 1.22856 1.03296 0.90370 1.02929 0.90050 0.92901 0.89467 0.95993 0.97763 0.78808 0.93912 0.75877 0.85819 0.88097 0.89374 0.89352 0.89107 0.89710 0.91527 0.89818 0.88016 0.86863 0.87928 0.88932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.25 7.04 71.98 0.51 -3.74 16 2 C 0.21 7.19 0.54 3.61 0.00 7.19 16 3 C 0.15 6.83 5.02 86.38 0.43 7.26 16 4 N -0.73 -38.45 5.17 -343.46 -1.78 -40.23 16 5 C -0.25 -14.58 9.99 84.03 0.84 -13.74 16 6 H 0.06 3.62 7.83 -2.91 -0.02 3.60 16 7 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 8 N -0.96 -58.31 13.06 21.65 0.28 -58.03 16 9 Si 0.97 47.52 29.55 68.60 2.03 49.54 16 10 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 11 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 12 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 13 N -0.70 -23.44 4.70 -426.48 -2.00 -25.44 16 14 C 0.56 21.12 7.20 86.57 0.62 21.75 16 15 O -0.58 -25.73 13.58 -4.10 -0.06 -25.79 16 16 C -0.21 -6.49 6.09 -18.57 -0.11 -6.61 16 17 C -0.08 -2.26 10.43 24.66 0.26 -2.01 16 18 C -0.10 -1.90 6.80 30.52 0.21 -1.70 16 19 C -0.11 -1.94 7.16 31.66 0.23 -1.72 16 20 C -0.09 -2.13 6.06 30.51 0.18 -1.94 16 21 C -0.17 -5.22 4.05 -10.79 -0.04 -5.26 16 22 C -0.17 -3.85 9.61 30.59 0.29 -3.56 16 23 C -0.16 -3.76 9.81 30.60 0.30 -3.46 16 24 H 0.08 2.26 6.84 -2.39 -0.02 2.25 16 25 H 0.05 1.80 6.86 -2.39 -0.02 1.78 16 26 H 0.09 1.94 7.01 -2.39 -0.02 1.93 16 27 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.00 0.23 6.64 -2.39 -0.02 0.21 16 29 H 0.38 20.27 6.35 -92.71 -0.59 19.68 16 30 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 31 H 0.41 11.79 7.46 -92.71 -0.69 11.10 16 32 H 0.12 3.57 8.03 -2.91 -0.02 3.54 16 33 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.71 7.77 -2.38 -0.02 1.69 16 38 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 39 H 0.08 3.15 7.17 -2.39 -0.02 3.14 16 40 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 41 H 0.11 2.36 5.87 -2.39 -0.01 2.35 16 42 H 0.10 2.19 7.42 -2.39 -0.02 2.17 16 43 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -72.27 341.40 2.40 -69.87 By element: Atomic # 1 Polarization: 41.31 SS G_CDS: -0.26 Total: 41.05 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 4.19 Total: -10.98 kcal Atomic # 7 Polarization: -120.20 SS G_CDS: -3.50 Total: -123.70 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.06 Total: -25.79 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.54 kcal Total: -72.27 2.40 -69.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665992317.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.250 kcal (2) G-P(sol) polarization free energy of solvation -72.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds