Wall clock time and date at job start Tue Mar 31 2020 00:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46982 * 110.55064 * 3 2 1 5 5 C 1.34780 * 119.99833 * 269.99666 * 4 3 2 6 6 O 1.21278 * 119.99983 * 180.02562 * 5 4 3 7 7 C 1.50702 * 119.99729 * 0.02562 * 5 4 3 8 8 C 1.52998 * 109.46705 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47131 * 179.97438 * 8 7 5 10 10 C 1.46498 * 120.00008 * 89.99993 * 4 3 2 11 11 C 1.53071 * 109.44009 * 299.79262 * 10 4 3 12 12 C 1.53201 * 109.29371 * 181.23934 * 11 10 4 13 13 N 1.46928 * 108.89275 * 305.57634 * 12 11 10 14 14 C 1.36934 * 120.63265 * 233.51651 * 13 12 11 15 15 H 1.07997 * 119.99862 * 151.82898 * 14 13 12 16 16 C 1.38806 * 120.00015 * 331.83027 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.08772 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.08448 * 16 14 13 19 19 H 1.48503 * 109.47142 * 60.00161 * 18 16 14 20 20 H 1.48498 * 109.47084 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47267 * 300.00095 * 18 16 14 22 22 C 1.46932 * 118.73342 * 53.53882 * 13 12 11 23 23 C 1.53045 * 109.46092 * 59.99907 * 10 4 3 24 24 H 4.40641 * 5.51496 * 180.02562 * 4 1 2 25 25 H 1.08994 * 109.46925 * 350.55065 * 3 2 1 26 26 H 1.09006 * 109.46830 * 230.54617 * 3 2 1 27 27 H 1.08999 * 109.46898 * 299.99422 * 7 5 4 28 28 H 1.08997 * 109.47139 * 59.99923 * 7 5 4 29 29 H 1.09007 * 109.47100 * 299.99721 * 8 7 5 30 30 H 1.09000 * 109.47553 * 59.99600 * 8 7 5 31 31 H 1.09000 * 109.47212 * 59.99411 * 9 8 7 32 32 H 1.09001 * 109.47113 * 179.97438 * 9 8 7 33 33 H 1.09007 * 109.46916 * 299.99853 * 9 8 7 34 34 H 1.08998 * 109.45866 * 179.97438 * 10 4 3 35 35 H 1.09002 * 109.39343 * 61.36176 * 11 10 4 36 36 H 1.09003 * 109.62467 * 301.25403 * 11 10 4 37 37 H 1.09000 * 109.58250 * 185.72113 * 12 11 10 38 38 H 1.08995 * 109.58477 * 65.43833 * 12 11 10 39 39 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.59017 * 66.18099 * 22 13 12 41 41 H 1.09009 * 109.58200 * 186.46074 * 22 13 12 42 42 H 1.09002 * 109.49555 * 58.67538 * 23 10 4 43 43 H 1.08992 * 109.52043 * 298.59539 * 23 10 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.4857 -1.2933 5 6 3.3592 -0.3841 -2.2980 6 8 3.7636 0.0174 -3.3685 7 6 3.1081 -1.8556 -2.0909 8 6 3.4394 -2.6152 -3.3770 9 6 3.1853 -4.1093 -3.1668 10 6 3.3776 1.9162 -1.4946 11 6 2.0741 2.6899 -1.2814 12 6 2.3255 4.1817 -1.5230 13 7 3.4377 4.6210 -0.6693 14 6 3.2922 5.6940 0.1689 15 1 3.8724 5.7516 1.0780 16 6 2.3991 6.7076 -0.1498 17 7 1.9443 6.8214 -1.3797 18 14 1.8424 7.9101 1.1668 19 1 3.0221 8.6296 1.7109 20 1 0.8950 8.8886 0.5749 21 1 1.1670 7.1680 2.2615 22 6 4.7092 3.8874 -0.7326 23 6 4.4323 2.3994 -0.4964 24 1 -1.0501 0.0001 0.0002 25 1 3.0097 -1.0129 0.1687 26 1 3.0090 0.6539 0.7936 27 1 3.7383 -2.2211 -1.2801 28 1 2.0602 -2.0131 -1.8361 29 1 2.8090 -2.2496 -4.1877 30 1 4.4873 -2.4578 -3.6324 31 1 2.1375 -4.2671 -2.9111 32 1 3.4208 -4.6504 -4.0832 33 1 3.8160 -4.4746 -2.3562 34 1 3.7351 2.0843 -2.5105 35 1 1.7275 2.5402 -0.2588 36 1 1.3171 2.3310 -1.9787 37 1 1.4282 4.7483 -1.2744 38 1 2.5820 4.3441 -2.5698 39 1 1.3204 7.5299 -1.6025 40 1 5.1612 4.0236 -1.7150 41 1 5.3857 4.2618 0.0359 42 1 5.3522 1.8315 -0.6358 43 1 4.0656 2.2543 0.5197 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671450282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:28 Heat of formation + Delta-G solvation = 30.577244 kcal Electronic energy + Delta-G solvation = -22365.916959 eV Core-core repulsion = 19220.031730 eV Total energy + Delta-G solvation = -3145.885229 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.12544 -37.55470 -35.62224 -34.50445 -33.04629 -32.08094 -30.30936 -29.65613 -27.95602 -27.09131 -24.93424 -22.57697 -22.18121 -21.31384 -19.56288 -19.19161 -17.90849 -17.00503 -16.69032 -16.00311 -15.87777 -14.84563 -14.63902 -14.10955 -13.80376 -13.65235 -13.44126 -13.32730 -13.09334 -12.89516 -12.70619 -12.40641 -12.08392 -11.86237 -11.47478 -11.32032 -11.16285 -10.94315 -10.87814 -10.71893 -10.52189 -10.40966 -10.14857 -10.14450 -10.03726 -9.76128 -9.65264 -9.41812 -8.58972 -8.37757 -6.67538 -5.78128 -3.21082 2.51083 2.78082 2.85460 3.38173 3.43968 3.44378 3.45367 4.38388 4.49815 4.57771 4.76028 4.85976 5.06810 5.27319 5.29221 5.36076 5.38059 5.44923 5.48323 5.52906 5.59020 5.65946 5.85344 5.87903 5.94341 6.02413 6.10039 6.18280 6.24918 6.34192 6.49509 6.60907 6.64856 6.78777 6.90345 6.96395 7.36680 7.52454 7.63426 7.68005 7.79611 8.31406 8.45624 9.21463 9.84831 10.41948 11.30519 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028776 B = 0.004255 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.789797 B = 6578.181053 C = 6957.652245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.203 4.203 3 C 0.216 3.784 4 N -0.604 5.604 5 C 0.512 3.488 6 O -0.539 6.539 7 C -0.141 4.141 8 C -0.110 4.110 9 C -0.152 4.152 10 C 0.144 3.856 11 C -0.141 4.141 12 C 0.174 3.826 13 N -0.592 5.592 14 C -0.254 4.254 15 H 0.065 0.935 16 C 0.003 3.997 17 N -0.902 5.902 18 Si 0.903 3.097 19 H -0.282 1.282 20 H -0.291 1.291 21 H -0.284 1.284 22 C 0.148 3.852 23 C -0.138 4.138 24 H 0.215 0.785 25 H 0.097 0.903 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.089 0.911 38 H 0.019 0.981 39 H 0.255 0.745 40 H 0.020 0.980 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.239 -19.133 2.036 19.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.205 4.205 3 C 0.093 3.907 4 N -0.335 5.335 5 C 0.301 3.699 6 O -0.416 6.416 7 C -0.181 4.181 8 C -0.148 4.148 9 C -0.209 4.209 10 C 0.042 3.958 11 C -0.182 4.182 12 C 0.048 3.952 13 N -0.315 5.315 14 C -0.384 4.384 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.732 3.268 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.021 3.979 23 C -0.179 4.179 24 H 0.232 0.768 25 H 0.115 0.885 26 H 0.124 0.876 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.037 0.963 39 H 0.065 0.935 40 H 0.038 0.962 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.386 -18.759 1.380 18.813 hybrid contribution -0.725 0.684 0.780 1.266 sum -0.339 -18.075 2.160 18.207 Atomic orbital electron populations 1.24913 0.95912 1.00777 0.98936 1.23530 0.94913 1.00546 1.01462 1.18382 0.83835 1.01136 0.87305 1.48317 1.64772 1.08484 1.11951 1.20756 0.76972 0.88548 0.83644 1.90688 1.45768 1.79876 1.25274 1.21775 1.03631 0.92099 1.00600 1.21283 1.02862 0.94126 0.96489 1.21791 1.01537 0.95900 1.01682 1.21238 0.96634 0.76868 1.01063 1.22539 0.95165 0.99530 1.00921 1.20751 0.93316 0.88198 0.92962 1.44074 1.06858 1.32687 1.47832 1.19130 1.22834 0.97002 0.99424 0.91702 1.25057 1.01771 0.97002 0.95740 1.70023 1.34587 1.33586 1.16415 0.86371 0.78448 0.80640 0.81309 1.20869 1.21640 1.21060 1.20858 0.89544 0.88919 0.98598 1.22382 0.97300 0.99366 0.98803 0.76778 0.88479 0.87585 0.89107 0.89113 0.91288 0.91238 0.92781 0.92501 0.92756 0.88576 0.92392 0.93320 0.89274 0.96256 0.93546 0.96206 0.92422 0.92771 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.24 19.25 29.55 0.57 -1.68 16 2 C -0.20 -2.61 11.92 -37.12 -0.44 -3.06 16 3 C 0.22 2.55 5.16 -6.83 -0.04 2.51 16 4 N -0.60 -8.95 2.37 -169.35 -0.40 -9.35 16 5 C 0.51 7.70 7.67 -10.98 -0.08 7.62 16 6 O -0.54 -10.23 15.31 5.56 0.09 -10.15 16 7 C -0.14 -1.48 4.25 -27.88 -0.12 -1.60 16 8 C -0.11 -1.14 5.22 -26.73 -0.14 -1.27 16 9 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 10 C 0.14 2.59 2.48 -67.87 -0.17 2.42 16 11 C -0.14 -2.82 4.75 -26.59 -0.13 -2.95 16 12 C 0.17 4.25 5.30 -3.71 -0.02 4.23 16 13 N -0.59 -14.89 3.00 -172.31 -0.52 -15.40 16 14 C -0.25 -6.97 9.58 -15.06 -0.14 -7.11 16 15 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 16 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 17 N -0.90 -26.38 11.20 55.49 0.62 -25.76 16 18 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 22 C 0.15 3.12 6.52 -3.71 -0.02 3.09 16 23 C -0.14 -2.41 5.31 -26.61 -0.14 -2.55 16 24 H 0.22 1.89 7.80 -54.09 -0.42 1.47 16 25 H 0.10 0.82 6.44 -51.93 -0.33 0.49 16 26 H 0.11 1.25 6.46 -51.93 -0.34 0.91 16 27 H 0.09 0.74 7.40 -51.93 -0.38 0.36 16 28 H 0.09 0.88 7.95 -51.93 -0.41 0.47 16 29 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 30 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 1.98 6.90 -51.93 -0.36 1.62 16 35 H 0.06 1.16 7.01 -51.93 -0.36 0.80 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 2.42 6.06 -51.93 -0.31 2.11 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 1.17 7.93 -51.92 -0.41 0.76 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.06 1.02 6.72 -51.93 -0.35 0.67 16 LS Contribution 345.08 15.07 5.20 5.20 Total: -1.00 -32.01 345.08 -7.67 -39.67 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.04 Total: 0.28 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -0.59 Total: -1.14 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.30 Total: -50.51 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.01 -7.67 -39.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671450282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.252 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds