Wall clock time and date at job start Tue Mar 31 2020 00:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46982 * 110.55064 * 3 2 1 5 5 C 1.34780 * 119.99833 * 269.99666 * 4 3 2 6 6 O 1.21278 * 119.99983 * 180.02562 * 5 4 3 7 7 C 1.50702 * 119.99729 * 0.02562 * 5 4 3 8 8 C 1.52998 * 109.46705 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47131 * 179.97438 * 8 7 5 10 10 C 1.46498 * 120.00008 * 89.99993 * 4 3 2 11 11 C 1.53071 * 109.44009 * 299.79262 * 10 4 3 12 12 C 1.53201 * 109.29371 * 181.23934 * 11 10 4 13 13 N 1.46928 * 108.89275 * 305.57634 * 12 11 10 14 14 C 1.36934 * 120.63265 * 233.51651 * 13 12 11 15 15 H 1.07997 * 119.99862 * 151.82898 * 14 13 12 16 16 C 1.38806 * 120.00015 * 331.83027 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.08772 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.08448 * 16 14 13 19 19 H 1.48503 * 109.47142 * 60.00161 * 18 16 14 20 20 H 1.48498 * 109.47084 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47267 * 300.00095 * 18 16 14 22 22 C 1.46932 * 118.73342 * 53.53882 * 13 12 11 23 23 C 1.53045 * 109.46092 * 59.99907 * 10 4 3 24 24 H 4.40641 * 5.51496 * 180.02562 * 4 1 2 25 25 H 1.08994 * 109.46925 * 350.55065 * 3 2 1 26 26 H 1.09006 * 109.46830 * 230.54617 * 3 2 1 27 27 H 1.08999 * 109.46898 * 299.99422 * 7 5 4 28 28 H 1.08997 * 109.47139 * 59.99923 * 7 5 4 29 29 H 1.09007 * 109.47100 * 299.99721 * 8 7 5 30 30 H 1.09000 * 109.47553 * 59.99600 * 8 7 5 31 31 H 1.09000 * 109.47212 * 59.99411 * 9 8 7 32 32 H 1.09001 * 109.47113 * 179.97438 * 9 8 7 33 33 H 1.09007 * 109.46916 * 299.99853 * 9 8 7 34 34 H 1.08998 * 109.45866 * 179.97438 * 10 4 3 35 35 H 1.09002 * 109.39343 * 61.36176 * 11 10 4 36 36 H 1.09003 * 109.62467 * 301.25403 * 11 10 4 37 37 H 1.09000 * 109.58250 * 185.72113 * 12 11 10 38 38 H 1.08995 * 109.58477 * 65.43833 * 12 11 10 39 39 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.59017 * 66.18099 * 22 13 12 41 41 H 1.09009 * 109.58200 * 186.46074 * 22 13 12 42 42 H 1.09002 * 109.49555 * 58.67538 * 23 10 4 43 43 H 1.08992 * 109.52043 * 298.59539 * 23 10 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.4857 -1.2933 5 6 3.3592 -0.3841 -2.2980 6 8 3.7636 0.0174 -3.3685 7 6 3.1081 -1.8556 -2.0909 8 6 3.4394 -2.6152 -3.3770 9 6 3.1853 -4.1093 -3.1668 10 6 3.3776 1.9162 -1.4946 11 6 2.0741 2.6899 -1.2814 12 6 2.3255 4.1817 -1.5230 13 7 3.4377 4.6210 -0.6693 14 6 3.2922 5.6940 0.1689 15 1 3.8724 5.7516 1.0780 16 6 2.3991 6.7076 -0.1498 17 7 1.9443 6.8214 -1.3797 18 14 1.8424 7.9101 1.1668 19 1 3.0221 8.6296 1.7109 20 1 0.8950 8.8886 0.5749 21 1 1.1670 7.1680 2.2615 22 6 4.7092 3.8874 -0.7326 23 6 4.4323 2.3994 -0.4964 24 1 -1.0501 0.0001 0.0002 25 1 3.0097 -1.0129 0.1687 26 1 3.0090 0.6539 0.7936 27 1 3.7383 -2.2211 -1.2801 28 1 2.0602 -2.0131 -1.8361 29 1 2.8090 -2.2496 -4.1877 30 1 4.4873 -2.4578 -3.6324 31 1 2.1375 -4.2671 -2.9111 32 1 3.4208 -4.6504 -4.0832 33 1 3.8160 -4.4746 -2.3562 34 1 3.7351 2.0843 -2.5105 35 1 1.7275 2.5402 -0.2588 36 1 1.3171 2.3310 -1.9787 37 1 1.4282 4.7483 -1.2744 38 1 2.5820 4.3441 -2.5698 39 1 1.3204 7.5299 -1.6025 40 1 5.1612 4.0236 -1.7150 41 1 5.3857 4.2618 0.0359 42 1 5.3522 1.8315 -0.6358 43 1 4.0656 2.2543 0.5197 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671450282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:27 Heat of formation + Delta-G solvation = 12.280184 kcal Electronic energy + Delta-G solvation = -22366.710379 eV Core-core repulsion = 19220.031730 eV Total energy + Delta-G solvation = -3146.678649 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.36552 -39.11916 -37.02424 -35.42218 -34.54393 -33.43165 -32.02384 -31.39189 -28.91242 -28.18277 -26.72127 -24.02617 -23.89403 -22.46338 -20.84709 -20.64333 -19.02353 -18.64828 -18.02009 -17.27888 -16.91440 -16.72759 -15.69107 -15.58882 -15.40796 -15.04759 -14.80849 -14.58309 -14.28672 -14.23490 -14.16503 -13.76850 -13.23462 -13.05453 -12.91316 -12.66190 -12.64849 -12.56620 -12.26376 -12.05275 -11.99630 -11.94662 -11.63318 -11.56691 -11.40125 -11.29857 -11.09374 -10.70628 -10.57451 -9.80991 -8.73166 -7.88722 -5.35448 1.44425 1.47353 1.49858 1.56614 1.65923 1.93646 2.37455 2.50831 3.27094 3.52012 3.57361 3.64561 3.89249 3.99281 4.04790 4.10940 4.23791 4.30649 4.43137 4.46119 4.60130 4.63237 4.71207 4.74077 4.77705 4.83829 4.92191 5.01632 5.04748 5.08358 5.14196 5.24093 5.27373 5.28576 5.42495 5.46399 5.55992 5.61712 5.66027 6.36782 6.38932 6.72310 7.11743 7.15122 7.82046 8.35590 9.18381 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028776 B = 0.004255 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.789797 B = 6578.181053 C = 6957.652245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.231 4.231 3 C 0.212 3.788 4 N -0.601 5.601 5 C 0.506 3.494 6 O -0.588 6.588 7 C -0.130 4.130 8 C -0.110 4.110 9 C -0.145 4.145 10 C 0.152 3.848 11 C -0.119 4.119 12 C 0.183 3.817 13 N -0.608 5.608 14 C -0.264 4.264 15 H 0.073 0.927 16 C -0.052 4.052 17 N -0.938 5.938 18 Si 0.970 3.030 19 H -0.274 1.274 20 H -0.297 1.297 21 H -0.275 1.275 22 C 0.142 3.858 23 C -0.121 4.121 24 H 0.238 0.762 25 H 0.139 0.861 26 H 0.110 0.890 27 H 0.126 0.874 28 H 0.106 0.894 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.045 0.955 37 H 0.057 0.943 38 H -0.013 1.013 39 H 0.250 0.750 40 H 0.006 0.994 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.350 -21.564 4.438 22.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.232 4.232 3 C 0.091 3.909 4 N -0.332 5.332 5 C 0.297 3.703 6 O -0.468 6.468 7 C -0.169 4.169 8 C -0.148 4.148 9 C -0.202 4.202 10 C 0.049 3.951 11 C -0.159 4.159 12 C 0.056 3.944 13 N -0.331 5.331 14 C -0.394 4.394 15 H 0.091 0.909 16 C -0.248 4.248 17 N -0.584 5.584 18 Si 0.798 3.202 19 H -0.199 1.199 20 H -0.223 1.223 21 H -0.201 1.201 22 C 0.016 3.984 23 C -0.161 4.161 24 H 0.254 0.746 25 H 0.157 0.843 26 H 0.128 0.872 27 H 0.144 0.856 28 H 0.124 0.876 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.005 0.995 39 H 0.059 0.941 40 H 0.024 0.976 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.510 -21.235 3.821 21.582 hybrid contribution -0.747 1.434 -0.019 1.617 sum -0.237 -19.800 3.802 20.163 Atomic orbital electron populations 1.25659 0.96892 1.00069 0.97879 1.23894 0.95638 1.01320 1.02375 1.18735 0.83466 1.03410 0.85312 1.48248 1.64690 1.06758 1.13464 1.21655 0.75665 0.90358 0.82670 1.90674 1.47948 1.80919 1.27277 1.21823 1.05225 0.88212 1.01664 1.21273 1.01544 0.96096 0.95908 1.21743 1.02430 0.93549 1.02507 1.20814 0.95412 0.79213 0.99662 1.22212 0.96349 0.96468 1.00886 1.20479 0.92000 0.90806 0.91075 1.44318 1.08396 1.32862 1.47557 1.19530 1.22576 0.97390 0.99894 0.90930 1.25878 1.02231 0.99053 0.97597 1.70202 1.35395 1.34378 1.18450 0.85299 0.77918 0.78282 0.78693 1.19922 1.22295 1.20120 1.21027 0.88036 0.91111 0.98197 1.22174 0.98210 0.96532 0.99166 0.74575 0.84313 0.87238 0.85598 0.87574 0.93563 0.92573 0.91933 0.92243 0.91156 0.91721 0.91866 0.93665 0.92455 0.99517 0.94135 0.97559 0.91507 0.90235 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.01 19.25 74.32 1.43 -2.58 16 2 C -0.23 -5.30 11.92 31.13 0.37 -4.93 16 3 C 0.21 4.27 5.16 84.57 0.44 4.70 16 4 N -0.60 -16.70 2.37 -808.09 -1.91 -18.61 16 5 C 0.51 14.50 7.67 87.66 0.67 15.17 16 6 O -0.59 -22.63 15.31 -3.02 -0.05 -22.67 16 7 C -0.13 -2.33 4.25 29.85 0.13 -2.20 16 8 C -0.11 -2.10 5.22 30.59 0.16 -1.94 16 9 C -0.15 -1.81 9.91 71.98 0.71 -1.10 16 10 C 0.15 5.45 2.48 45.03 0.11 5.56 16 11 C -0.12 -4.81 4.75 30.69 0.15 -4.66 16 12 C 0.18 9.32 5.30 86.37 0.46 9.77 16 13 N -0.61 -31.11 3.00 -699.07 -2.09 -33.21 16 14 C -0.26 -14.55 9.58 84.03 0.81 -13.74 16 15 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 16 C -0.05 -2.95 4.92 84.86 0.42 -2.54 16 17 N -0.94 -56.81 11.20 21.65 0.24 -56.57 16 18 Si 0.97 44.92 29.59 68.60 2.03 46.94 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 20 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 C 0.14 5.98 6.52 86.36 0.56 6.55 16 23 C -0.12 -4.01 5.31 30.67 0.16 -3.85 16 24 H 0.24 3.55 7.80 -4.41 -0.03 3.52 16 25 H 0.14 1.62 6.44 -2.39 -0.02 1.61 16 26 H 0.11 2.17 6.46 -2.38 -0.02 2.15 16 27 H 0.13 1.42 7.40 -2.39 -0.02 1.40 16 28 H 0.11 1.65 7.95 -2.39 -0.02 1.63 16 29 H 0.05 1.07 8.10 -2.38 -0.02 1.06 16 30 H 0.06 1.21 8.10 -2.39 -0.02 1.19 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.06 2.75 6.90 -2.39 -0.02 2.74 16 35 H 0.06 2.49 7.01 -2.39 -0.02 2.47 16 36 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.06 3.27 6.06 -2.39 -0.01 3.25 16 38 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 39 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 40 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.07 2.65 7.93 -2.38 -0.02 2.63 16 42 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.08 2.32 6.72 -2.39 -0.02 2.30 16 Total: -1.00 -72.63 345.08 5.76 -66.87 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.97 Total: 13.03 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 6.57 Total: 4.21 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -3.77 Total: -108.39 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.05 Total: -22.67 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -72.63 5.76 -66.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671450282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.154 kcal (2) G-P(sol) polarization free energy of solvation -72.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds