Wall clock time and date at job start Tue Mar 31 2020 00:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32990 * 119.99933 * 2 1 4 4 C 1.47101 * 119.99760 * 172.96265 * 3 2 1 5 5 O 1.21616 * 120.00178 * 354.03299 * 4 3 2 6 6 N 1.34779 * 120.00047 * 174.03262 * 4 3 2 7 7 C 1.46506 * 119.99896 * 179.97438 * 6 4 3 8 8 C 1.53004 * 109.46859 * 180.02562 * 7 6 4 9 9 H 1.09000 * 109.47121 * 295.00112 * 8 7 6 10 10 N 1.46497 * 109.46970 * 55.00216 * 8 7 6 11 11 C 1.36940 * 119.99957 * 205.00115 * 10 8 7 12 12 H 1.08002 * 119.99825 * 359.97438 * 11 10 8 13 13 C 1.38804 * 120.00324 * 180.02562 * 11 10 8 14 14 N 1.31618 * 119.99994 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 120.00154 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47044 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.46607 * 120.00068 * 15 13 11 18 18 H 1.48497 * 109.47023 * 240.00015 * 15 13 11 19 19 C 1.52996 * 109.46922 * 174.99937 * 8 7 6 20 20 C 1.52997 * 117.50125 * 248.74664 * 19 8 7 21 21 C 1.53002 * 117.50009 * 180.08631 * 19 8 7 22 22 C 1.50698 * 119.99822 * 180.02562 * 2 1 3 23 23 C 1.53002 * 117.49815 * 1.64079 * 22 2 1 24 24 C 1.52996 * 60.00113 * 252.51356 * 23 22 2 25 25 H 1.08995 * 109.47698 * 89.99559 * 1 2 3 26 26 H 1.08996 * 109.47109 * 210.00451 * 1 2 3 27 27 H 1.09006 * 109.46864 * 329.99912 * 1 2 3 28 28 H 1.07995 * 120.00228 * 352.95584 * 3 2 1 29 29 H 0.96998 * 119.99979 * 359.97438 * 6 4 3 30 30 H 1.08993 * 109.47006 * 300.00349 * 7 6 4 31 31 H 1.09003 * 109.46838 * 60.00143 * 7 6 4 32 32 H 0.96997 * 120.00396 * 24.99875 * 10 8 7 33 33 H 0.97001 * 119.99985 * 180.02562 * 14 13 11 34 34 H 1.09008 * 115.54780 * 34.41942 * 19 8 7 35 35 H 1.09000 * 117.49836 * 0.02562 * 20 19 8 36 36 H 1.08995 * 117.50056 * 145.02214 * 20 19 8 37 37 H 1.09002 * 117.50171 * 214.98511 * 21 19 8 38 38 H 1.09004 * 117.49175 * 0.02562 * 21 19 8 39 39 H 1.09002 * 115.55225 * 147.35113 * 22 2 1 40 40 H 1.09002 * 117.50101 * 0.02562 * 23 22 2 41 41 H 1.09003 * 117.49789 * 145.02034 * 23 22 2 42 42 H 1.09006 * 117.49777 * 252.51115 * 24 23 22 43 43 H 1.09001 * 117.51622 * 107.48228 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6346 1.1565 0.1561 5 8 4.2243 0.1196 0.3934 6 7 4.3214 2.3099 0.0360 7 6 5.7782 2.3147 0.1921 8 6 6.3058 3.7393 0.0100 9 1 6.1244 4.0659 -1.0140 10 7 5.6159 4.6380 0.9387 11 6 5.5130 5.9728 0.6506 12 1 5.9408 6.3630 -0.2611 13 6 4.8598 6.8245 1.5307 14 7 4.3389 6.3491 2.6420 15 14 4.7200 8.6454 1.1380 16 1 5.3838 8.9241 -0.1608 17 1 3.2868 9.0249 1.0536 18 1 5.3788 9.4348 2.2095 19 6 7.8087 3.7668 0.2953 20 6 8.2760 4.5053 1.5512 21 6 8.5275 5.1115 0.1683 22 6 2.2605 -1.3051 -0.0006 23 6 1.4388 -2.5952 -0.0400 24 6 2.1540 -2.1828 1.2481 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6381 2.0835 -0.1147 29 1 3.8513 3.1369 -0.1536 30 1 6.0381 1.9559 1.1879 31 1 6.2260 1.6624 -0.5576 32 1 5.2320 4.2877 1.7576 33 1 3.8821 6.9442 3.2569 34 1 8.3591 2.8723 0.0033 35 1 7.5126 4.9712 2.1743 36 1 9.1339 4.0970 2.0852 37 1 9.5508 5.1018 -0.2070 38 1 7.9294 5.9766 -0.1182 39 1 3.2126 -1.2981 -0.5311 40 1 0.3532 -2.4999 -0.0660 41 1 1.8503 -3.4371 -0.5968 42 1 3.0360 -2.7535 1.5389 43 1 1.5392 -1.8161 2.0701 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690144450.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:02 Heat of formation + Delta-G solvation = 40.509814 kcal Electronic energy + Delta-G solvation = -21638.724001 eV Core-core repulsion = 18493.269480 eV Total energy + Delta-G solvation = -3145.454521 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.59606 -37.96437 -37.24779 -34.36878 -33.31883 -33.20729 -30.84704 -28.69245 -27.46883 -24.05924 -23.29219 -22.40399 -22.22062 -21.49039 -20.30386 -19.24190 -18.38530 -17.31248 -16.72012 -15.94278 -15.28682 -15.05089 -14.69002 -14.58285 -14.12430 -13.65423 -13.48975 -13.32480 -13.08557 -12.81333 -12.70712 -12.24790 -12.01737 -11.55385 -11.31157 -11.24908 -11.13419 -10.90295 -10.84752 -10.72045 -10.50844 -10.33528 -10.09331 -9.68830 -9.50296 -9.23762 -9.12848 -8.98164 -8.84946 -8.40833 -7.06719 -5.84186 -3.14185 1.49068 3.37767 3.44570 3.46341 3.60026 3.73931 4.02333 4.49641 4.59527 4.64426 4.85598 5.03463 5.13915 5.15554 5.39771 5.45475 5.46231 5.50718 5.57278 5.60475 5.61637 5.75341 5.79303 5.86113 5.90754 6.00963 6.07927 6.10743 6.12298 6.30622 6.39070 6.46134 6.49400 6.65832 6.67553 6.79030 6.96884 7.05487 7.28451 7.65585 8.08529 8.33024 8.71680 9.45424 9.99780 10.36044 11.37342 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018683 B = 0.004198 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.353251 B = 6667.728706 C = 7777.233972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.018 4.018 3 C -0.214 4.214 4 C 0.541 3.459 5 O -0.552 6.552 6 N -0.709 5.709 7 C 0.121 3.879 8 C 0.191 3.809 9 H 0.056 0.944 10 N -0.717 5.717 11 C -0.239 4.239 12 H 0.072 0.928 13 C -0.008 4.008 14 N -0.928 5.928 15 Si 0.902 3.098 16 H -0.281 1.281 17 H -0.292 1.292 18 H -0.292 1.292 19 C -0.177 4.177 20 C -0.163 4.163 21 C -0.176 4.176 22 C -0.111 4.111 23 C -0.194 4.194 24 C -0.156 4.156 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.128 0.872 29 H 0.410 0.590 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.386 0.614 33 H 0.255 0.745 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.133 0.867 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.194 -12.450 -5.995 14.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.020 4.020 3 C -0.235 4.235 4 C 0.330 3.670 5 O -0.434 6.434 6 N -0.360 5.360 7 C -0.004 4.004 8 C 0.081 3.919 9 H 0.074 0.926 10 N -0.359 5.359 11 C -0.370 4.370 12 H 0.090 0.910 13 C -0.205 4.205 14 N -0.576 5.576 15 Si 0.733 3.267 16 H -0.206 1.206 17 H -0.220 1.220 18 H -0.219 1.219 19 C -0.199 4.199 20 C -0.200 4.200 21 C -0.213 4.213 22 C -0.129 4.129 23 C -0.230 4.230 24 C -0.194 4.194 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.146 0.854 29 H 0.246 0.754 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.221 0.779 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.136 0.864 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.120 0.880 39 H 0.150 0.850 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.768 -12.966 -5.897 14.734 hybrid contribution -0.266 1.530 0.120 1.558 sum -4.035 -11.436 -5.777 13.433 Atomic orbital electron populations 1.20982 0.91401 1.03156 1.02740 1.21715 0.94997 0.93309 0.91935 1.22466 0.93907 0.98637 1.08462 1.18491 0.87699 0.83567 0.77223 1.90698 1.71175 1.31690 1.49803 1.45907 1.08303 1.10526 1.71230 1.21532 0.79681 0.97850 1.01324 1.19995 0.88868 0.88210 0.94854 0.92580 1.42477 1.65304 1.04781 1.23314 1.19218 1.29746 0.84114 1.03915 0.91023 1.24706 1.00986 0.97839 0.96938 1.69671 1.42022 1.34208 1.11671 0.86202 0.77254 0.85818 0.77406 1.20592 1.21961 1.21929 1.23073 0.97871 0.94798 1.04160 1.22908 1.02278 1.03714 0.91106 1.22852 0.99319 0.97608 1.01502 1.21433 1.00369 0.87748 1.03341 1.23126 0.98973 0.98863 1.02078 1.22776 1.02514 1.02695 0.91367 0.90569 0.91052 0.90928 0.85419 0.75416 0.91828 0.92043 0.77914 0.93523 0.89664 0.86360 0.91317 0.91043 0.87952 0.84952 0.88812 0.88898 0.88673 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 9.49 36.01 0.34 -0.83 16 2 C -0.02 -0.22 5.80 -101.17 -0.59 -0.81 16 3 C -0.21 -3.03 9.62 -37.81 -0.36 -3.39 16 4 C 0.54 9.19 7.67 -12.66 -0.10 9.09 16 5 O -0.55 -10.49 13.31 5.26 0.07 -10.42 16 6 N -0.71 -12.02 5.38 -61.49 -0.33 -12.35 16 7 C 0.12 2.08 5.22 -4.04 -0.02 2.06 16 8 C 0.19 3.55 2.86 -67.93 -0.19 3.36 16 9 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 10 N -0.72 -16.01 3.08 -53.43 -0.16 -16.18 16 11 C -0.24 -5.96 8.16 -15.06 -0.12 -6.08 16 12 H 0.07 1.77 6.91 -52.49 -0.36 1.41 16 13 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 14 N -0.93 -26.31 13.06 55.49 0.72 -25.58 16 15 Si 0.90 21.32 29.55 -169.99 -5.02 16.30 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 C -0.18 -3.12 5.70 -90.62 -0.52 -3.64 16 20 C -0.16 -3.08 9.74 -26.70 -0.26 -3.34 16 21 C -0.18 -3.16 9.87 -26.69 -0.26 -3.42 16 22 C -0.11 -1.45 4.35 -91.77 -0.40 -1.84 16 23 C -0.19 -1.96 9.79 -26.73 -0.26 -2.22 16 24 C -0.16 -1.86 10.23 -26.73 -0.27 -2.13 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.59 6.37 -51.93 -0.33 0.26 16 27 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 28 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.41 7.01 8.12 -40.82 -0.33 6.68 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.39 9.54 7.80 -40.82 -0.32 9.22 16 33 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.09 1.35 8.11 -51.92 -0.42 0.93 16 35 H 0.12 2.67 6.68 -51.93 -0.35 2.33 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.10 2.05 6.22 -51.93 -0.32 1.73 16 39 H 0.13 2.02 6.24 -51.93 -0.32 1.70 16 40 H 0.09 0.81 6.31 -51.93 -0.33 0.48 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 350.13 15.07 5.28 5.28 Total: -1.00 -28.10 350.13 -9.43 -37.53 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: -6.86 Total: 18.94 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -3.11 Total: -13.52 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.23 Total: -54.11 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.07 Total: -10.42 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.10 -9.43 -37.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690144450.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.042 kcal (2) G-P(sol) polarization free energy of solvation -28.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds