Wall clock time and date at job start Tue Mar 31 2020 00:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32990 * 119.99933 * 2 1 4 4 C 1.47101 * 119.99760 * 172.96265 * 3 2 1 5 5 O 1.21616 * 120.00178 * 354.03299 * 4 3 2 6 6 N 1.34779 * 120.00047 * 174.03262 * 4 3 2 7 7 C 1.46506 * 119.99896 * 179.97438 * 6 4 3 8 8 C 1.53004 * 109.46859 * 180.02562 * 7 6 4 9 9 H 1.09000 * 109.47121 * 295.00112 * 8 7 6 10 10 N 1.46497 * 109.46970 * 55.00216 * 8 7 6 11 11 C 1.36940 * 119.99957 * 205.00115 * 10 8 7 12 12 H 1.08002 * 119.99825 * 359.97438 * 11 10 8 13 13 C 1.38804 * 120.00324 * 180.02562 * 11 10 8 14 14 N 1.31618 * 119.99994 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 120.00154 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47044 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.46607 * 120.00068 * 15 13 11 18 18 H 1.48497 * 109.47023 * 240.00015 * 15 13 11 19 19 C 1.52996 * 109.46922 * 174.99937 * 8 7 6 20 20 C 1.52997 * 117.50125 * 248.74664 * 19 8 7 21 21 C 1.53002 * 117.50009 * 180.08631 * 19 8 7 22 22 C 1.50698 * 119.99822 * 180.02562 * 2 1 3 23 23 C 1.53002 * 117.49815 * 1.64079 * 22 2 1 24 24 C 1.52996 * 60.00113 * 252.51356 * 23 22 2 25 25 H 1.08995 * 109.47698 * 89.99559 * 1 2 3 26 26 H 1.08996 * 109.47109 * 210.00451 * 1 2 3 27 27 H 1.09006 * 109.46864 * 329.99912 * 1 2 3 28 28 H 1.07995 * 120.00228 * 352.95584 * 3 2 1 29 29 H 0.96998 * 119.99979 * 359.97438 * 6 4 3 30 30 H 1.08993 * 109.47006 * 300.00349 * 7 6 4 31 31 H 1.09003 * 109.46838 * 60.00143 * 7 6 4 32 32 H 0.96997 * 120.00396 * 24.99875 * 10 8 7 33 33 H 0.97001 * 119.99985 * 180.02562 * 14 13 11 34 34 H 1.09008 * 115.54780 * 34.41942 * 19 8 7 35 35 H 1.09000 * 117.49836 * 0.02562 * 20 19 8 36 36 H 1.08995 * 117.50056 * 145.02214 * 20 19 8 37 37 H 1.09002 * 117.50171 * 214.98511 * 21 19 8 38 38 H 1.09004 * 117.49175 * 0.02562 * 21 19 8 39 39 H 1.09002 * 115.55225 * 147.35113 * 22 2 1 40 40 H 1.09002 * 117.50101 * 0.02562 * 23 22 2 41 41 H 1.09003 * 117.49789 * 145.02034 * 23 22 2 42 42 H 1.09006 * 117.49777 * 252.51115 * 24 23 22 43 43 H 1.09001 * 117.51622 * 107.48228 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6346 1.1565 0.1561 5 8 4.2243 0.1196 0.3934 6 7 4.3214 2.3099 0.0360 7 6 5.7782 2.3147 0.1921 8 6 6.3058 3.7393 0.0100 9 1 6.1244 4.0659 -1.0140 10 7 5.6159 4.6380 0.9387 11 6 5.5130 5.9728 0.6506 12 1 5.9408 6.3630 -0.2611 13 6 4.8598 6.8245 1.5307 14 7 4.3389 6.3491 2.6420 15 14 4.7200 8.6454 1.1380 16 1 5.3838 8.9241 -0.1608 17 1 3.2868 9.0249 1.0536 18 1 5.3788 9.4348 2.2095 19 6 7.8087 3.7668 0.2953 20 6 8.2760 4.5053 1.5512 21 6 8.5275 5.1115 0.1683 22 6 2.2605 -1.3051 -0.0006 23 6 1.4388 -2.5952 -0.0400 24 6 2.1540 -2.1828 1.2481 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6381 2.0835 -0.1147 29 1 3.8513 3.1369 -0.1536 30 1 6.0381 1.9559 1.1879 31 1 6.2260 1.6624 -0.5576 32 1 5.2320 4.2877 1.7576 33 1 3.8821 6.9442 3.2569 34 1 8.3591 2.8723 0.0033 35 1 7.5126 4.9712 2.1743 36 1 9.1339 4.0970 2.0852 37 1 9.5508 5.1018 -0.2070 38 1 7.9294 5.9766 -0.1182 39 1 3.2126 -1.2981 -0.5311 40 1 0.3532 -2.4999 -0.0660 41 1 1.8503 -3.4371 -0.5968 42 1 3.0360 -2.7535 1.5389 43 1 1.5392 -1.8161 2.0701 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690144450.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:01 Heat of formation + Delta-G solvation = 25.037272 kcal Electronic energy + Delta-G solvation = -21639.394941 eV Core-core repulsion = 18493.269480 eV Total energy + Delta-G solvation = -3146.125460 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.86942 -39.33393 -38.45021 -35.81776 -35.02120 -34.29726 -32.57140 -30.14776 -28.62701 -25.69107 -24.74951 -23.63723 -23.16067 -22.94422 -21.61240 -20.69424 -19.64241 -19.07971 -17.96649 -17.15961 -16.81774 -16.37742 -16.18321 -16.00697 -15.55239 -15.22426 -14.87227 -14.51131 -14.33875 -13.91519 -13.88337 -13.61411 -13.11872 -12.93773 -12.88662 -12.65275 -12.56980 -12.43674 -12.17266 -12.09904 -11.92381 -11.65736 -11.59060 -11.28928 -11.04529 -10.90520 -10.62606 -10.44809 -10.03441 -9.64407 -8.98943 -7.88099 -5.15809 0.41197 1.48414 1.51158 1.58359 2.34624 2.44670 2.58901 3.08927 3.13694 3.46946 3.65483 3.87841 3.90392 4.00639 4.07563 4.19578 4.27235 4.29802 4.33498 4.46770 4.51548 4.59332 4.65021 4.70625 4.75692 4.82764 4.94211 4.96232 4.98279 5.10429 5.18367 5.25071 5.27271 5.29924 5.43349 5.48391 5.64883 5.66774 5.67665 5.68871 6.31961 6.73397 7.38353 7.40251 8.10958 8.36732 9.34588 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018683 B = 0.004198 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.353251 B = 6667.728706 C = 7777.233972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.003 3.997 3 C -0.245 4.245 4 C 0.535 3.465 5 O -0.579 6.579 6 N -0.711 5.711 7 C 0.131 3.869 8 C 0.193 3.807 9 H 0.059 0.941 10 N -0.720 5.720 11 C -0.218 4.218 12 H 0.076 0.924 13 C -0.066 4.066 14 N -0.965 5.965 15 Si 0.957 3.043 16 H -0.268 1.268 17 H -0.298 1.298 18 H -0.302 1.302 19 C -0.169 4.169 20 C -0.173 4.173 21 C -0.169 4.169 22 C -0.140 4.140 23 C -0.162 4.162 24 C -0.165 4.165 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.140 0.860 29 H 0.408 0.592 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.373 0.627 33 H 0.247 0.753 34 H 0.114 0.886 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.117 0.883 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.662 -13.562 -7.489 16.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.001 3.999 3 C -0.266 4.266 4 C 0.327 3.673 5 O -0.462 6.462 6 N -0.361 5.361 7 C 0.006 3.994 8 C 0.084 3.916 9 H 0.077 0.923 10 N -0.359 5.359 11 C -0.350 4.350 12 H 0.094 0.906 13 C -0.259 4.259 14 N -0.616 5.616 15 Si 0.789 3.211 16 H -0.192 1.192 17 H -0.225 1.225 18 H -0.230 1.230 19 C -0.190 4.190 20 C -0.211 4.211 21 C -0.206 4.206 22 C -0.158 4.158 23 C -0.199 4.199 24 C -0.202 4.202 25 H 0.115 0.885 26 H 0.106 0.894 27 H 0.096 0.904 28 H 0.157 0.843 29 H 0.244 0.756 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.206 0.794 33 H 0.056 0.944 34 H 0.132 0.868 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.135 0.865 41 H 0.122 0.878 42 H 0.107 0.893 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.212 -14.088 -7.441 16.480 hybrid contribution -0.080 1.740 0.538 1.823 sum -4.292 -12.348 -6.903 14.784 Atomic orbital electron populations 1.21086 0.88537 1.04254 1.04289 1.22120 0.96880 0.92459 0.88465 1.22447 0.92281 1.00010 1.11882 1.18996 0.88946 0.82958 0.76445 1.90683 1.71995 1.32385 1.51140 1.45919 1.08144 1.10629 1.71454 1.21386 0.80194 0.96973 1.00798 1.20120 0.89448 0.88149 0.93927 0.92290 1.42521 1.65590 1.04497 1.23339 1.19469 1.27274 0.85109 1.03118 0.90579 1.25310 1.02180 1.01086 0.97316 1.69812 1.44000 1.34927 1.12864 0.85302 0.76637 0.81968 0.77237 1.19214 1.22532 1.23042 1.23059 0.97043 0.95898 1.03050 1.22767 1.02226 1.04717 0.91354 1.22844 1.00606 0.96693 1.00421 1.21368 1.00473 0.89417 1.04518 1.23233 0.99898 0.96947 0.99816 1.22828 1.02959 1.02581 0.91868 0.88539 0.89420 0.90381 0.84251 0.75586 0.93480 0.90582 0.79430 0.94418 0.86786 0.90488 0.89127 0.87980 0.90293 0.87752 0.86465 0.87791 0.89339 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.49 71.24 0.68 -1.29 16 2 C 0.00 0.07 5.80 -17.62 -0.10 -0.04 16 3 C -0.25 -6.92 9.62 23.43 0.23 -6.69 16 4 C 0.54 18.53 7.67 86.57 0.66 19.19 16 5 O -0.58 -22.51 13.31 -4.08 -0.05 -22.57 16 6 N -0.71 -24.48 5.38 -466.69 -2.51 -26.99 16 7 C 0.13 4.51 5.22 86.38 0.45 4.96 16 8 C 0.19 7.05 2.86 44.99 0.13 7.18 16 9 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 10 N -0.72 -32.57 3.08 -322.95 -0.99 -33.56 16 11 C -0.22 -10.93 8.16 84.03 0.69 -10.25 16 12 H 0.08 3.72 6.91 -2.91 -0.02 3.70 16 13 C -0.07 -3.57 5.50 84.86 0.47 -3.11 16 14 N -0.96 -56.28 13.06 21.65 0.28 -56.00 16 15 Si 0.96 44.43 29.55 68.60 2.03 46.46 16 16 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 18 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 19 C -0.17 -5.68 5.70 -10.79 -0.06 -5.74 16 20 C -0.17 -6.42 9.74 30.62 0.30 -6.12 16 21 C -0.17 -5.75 9.87 30.62 0.30 -5.45 16 22 C -0.14 -3.52 4.35 -11.54 -0.05 -3.57 16 23 C -0.16 -2.86 9.79 30.59 0.30 -2.56 16 24 C -0.17 -3.74 10.23 30.59 0.31 -3.42 16 25 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.09 1.11 6.37 -2.39 -0.02 1.10 16 27 H 0.08 1.19 8.07 -2.38 -0.02 1.17 16 28 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 29 H 0.41 14.22 8.12 -92.71 -0.75 13.47 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.37 19.01 7.80 -92.71 -0.72 18.28 16 33 H 0.25 14.23 8.31 -92.71 -0.77 13.45 16 34 H 0.11 3.24 8.11 -2.38 -0.02 3.22 16 35 H 0.08 3.56 6.68 -2.39 -0.02 3.54 16 36 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 38 H 0.08 3.08 6.22 -2.39 -0.01 3.06 16 39 H 0.10 3.26 6.24 -2.39 -0.01 3.24 16 40 H 0.12 1.54 6.31 -2.39 -0.02 1.52 16 41 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 43 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -61.97 350.13 2.59 -59.38 By element: Atomic # 1 Polarization: 50.65 SS G_CDS: -0.46 Total: 50.19 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 4.30 Total: -16.91 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -3.22 Total: -116.56 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.05 Total: -22.57 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -61.97 2.59 -59.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690144450.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.419 kcal (2) G-P(sol) polarization free energy of solvation -61.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds