Wall clock time and date at job start Tue Mar 31 2020 00:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47116 * 119.99454 * 2 1 4 4 C 1.50697 * 120.00377 * 359.97438 * 3 2 1 5 5 C 1.32871 * 119.99454 * 180.02562 * 3 2 1 6 6 C 1.50709 * 119.99869 * 173.83657 * 5 3 2 7 7 C 1.50697 * 109.47253 * 233.87706 * 6 5 3 8 8 O 1.21288 * 120.00100 * 0.02562 * 7 6 5 9 9 N 1.34768 * 120.00187 * 180.02562 * 7 6 5 10 10 C 1.46506 * 120.00061 * 359.97438 * 9 7 6 11 11 C 1.46505 * 120.00309 * 180.02562 * 9 7 6 12 12 C 1.52999 * 109.46997 * 95.29210 * 11 9 7 13 13 H 1.08998 * 112.74088 * 43.64124 * 12 11 9 14 14 C 1.53497 * 113.51933 * 272.84835 * 12 11 9 15 15 C 1.53754 * 83.25827 * 218.97693 * 14 12 11 16 16 N 1.47064 * 113.46502 * 174.38883 * 12 11 9 17 17 C 1.36939 * 136.05917 * 321.92146 * 16 12 11 18 18 H 1.07997 * 120.00228 * 355.79831 * 17 16 12 19 19 C 1.38812 * 120.00076 * 176.07637 * 17 16 12 20 20 N 1.31624 * 120.00122 * 359.72058 * 19 17 16 21 21 Si 1.86799 * 119.99935 * 179.72589 * 19 17 16 22 22 H 1.48498 * 109.47134 * 89.99923 * 21 19 17 23 23 H 1.48508 * 109.46862 * 209.99451 * 21 19 17 24 24 H 1.48497 * 109.47320 * 329.99534 * 21 19 17 25 25 H 1.08002 * 120.00142 * 0.02562 * 1 2 3 26 26 H 1.07997 * 119.99804 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.00142 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47412 * 265.13822 * 4 3 2 29 29 H 1.08999 * 109.46851 * 25.13763 * 4 3 2 30 30 H 1.09006 * 109.46969 * 145.14080 * 4 3 2 31 31 H 1.08004 * 120.00377 * 353.83728 * 5 3 2 32 32 H 1.09004 * 109.46840 * 113.87732 * 6 5 3 33 33 H 1.08996 * 109.47152 * 353.87928 * 6 5 3 34 34 H 1.08998 * 109.47252 * 267.93299 * 10 9 7 35 35 H 1.08999 * 109.46523 * 27.93463 * 10 9 7 36 36 H 1.09001 * 109.47139 * 147.92888 * 10 9 7 37 37 H 1.08997 * 109.47017 * 335.29162 * 11 9 7 38 38 H 1.08997 * 109.47025 * 215.29329 * 11 9 7 39 39 H 1.09006 * 114.20714 * 332.73609 * 14 12 11 40 40 H 1.09003 * 114.20654 * 105.36121 * 14 12 11 41 41 H 1.09000 * 113.46467 * 271.50517 * 15 14 12 42 42 H 1.09001 * 113.55337 * 140.98617 * 15 14 12 43 43 H 0.96996 * 119.99953 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 1.3106 2.5792 -0.0006 5 6 3.3929 1.2741 -0.0005 6 6 4.1463 2.5718 -0.1406 7 6 5.1224 2.4651 -1.2838 8 8 5.1985 1.4366 -1.9223 9 7 5.9109 3.5123 -1.5967 10 6 5.8187 4.7547 -0.8259 11 6 6.8594 3.4087 -2.7084 12 6 6.2245 3.9844 -3.9758 13 1 5.6966 4.9207 -3.7947 14 6 5.3990 2.9603 -4.7670 15 6 6.0188 3.6699 -5.9820 16 7 7.1486 4.0446 -5.1183 17 6 8.4757 4.3299 -5.2992 18 1 9.0769 4.6552 -4.4631 19 6 9.0468 4.2065 -6.5583 20 7 8.3141 3.8100 -7.5774 21 14 10.8553 4.6031 -6.8066 22 1 11.6649 3.3768 -6.5920 23 1 11.0676 5.1007 -8.1896 24 1 11.2710 5.6469 -5.8356 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8687 -0.9353 0.0004 28 1 1.2048 2.9372 -1.0246 29 1 0.3231 2.4287 0.4356 30 1 1.8591 3.3156 0.5869 31 1 3.9330 0.3442 0.0995 32 1 4.6886 2.7785 0.7821 33 1 3.4430 3.3808 -0.3378 34 1 5.1039 5.4257 -1.3023 35 1 5.4862 4.5297 0.1874 36 1 6.7974 5.2331 -0.7893 37 1 7.1136 2.3616 -2.8728 38 1 7.7632 3.9686 -2.4682 39 1 5.7226 1.9278 -4.6352 40 1 4.3205 3.0889 -4.6751 41 1 5.4366 4.5233 -6.3298 42 1 6.2955 2.9909 -6.7886 43 1 8.7133 3.7235 -8.4571 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691054739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:28 Heat of formation + Delta-G solvation = 59.301433 kcal Electronic energy + Delta-G solvation = -21649.225384 eV Core-core repulsion = 18504.585729 eV Total energy + Delta-G solvation = -3144.639655 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.84117 -37.96782 -36.93726 -35.15014 -32.64463 -32.11975 -29.47223 -28.15118 -27.82994 -26.84073 -25.82470 -23.34293 -22.42132 -20.96427 -19.12346 -18.86950 -17.97803 -17.06077 -16.69553 -16.17606 -15.75516 -15.34337 -14.68373 -14.29683 -13.93596 -13.78910 -13.62242 -13.26131 -13.06022 -12.78271 -12.64638 -12.47102 -12.07152 -11.95766 -11.72861 -11.59536 -11.43738 -11.02503 -10.97590 -10.78670 -10.71083 -10.63300 -10.35878 -9.79721 -9.72078 -9.62572 -9.36686 -8.74263 -8.31814 -8.22834 -6.81692 -5.71333 -3.05069 1.22158 2.82231 2.90466 3.30806 3.41047 3.45158 3.47389 4.48110 4.53827 4.67450 4.74521 5.06187 5.09546 5.16686 5.17133 5.30431 5.32856 5.42333 5.46604 5.52319 5.55592 5.67308 5.69466 5.71385 5.84802 5.94625 6.07306 6.14665 6.22983 6.35559 6.47048 6.55946 6.59015 6.72353 6.81787 6.84197 6.88201 7.31492 7.52801 7.65022 7.66453 8.04633 8.43169 9.07325 9.74909 10.70799 11.45278 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030997 B = 0.003466 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.094400 B = 8076.141558 C = 8471.324210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 C -0.115 4.115 4 C -0.122 4.122 5 C -0.113 4.113 6 C -0.116 4.116 7 C 0.513 3.487 8 O -0.530 6.530 9 N -0.613 5.613 10 C 0.078 3.922 11 C 0.115 3.885 12 C 0.131 3.869 13 H 0.039 0.961 14 C -0.155 4.155 15 C 0.147 3.853 16 N -0.601 5.601 17 C -0.218 4.218 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.917 5.917 21 Si 0.911 3.089 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.282 1.282 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.020 0.980 42 H 0.075 0.925 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.965 -1.045 18.224 22.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.129 4.129 3 C -0.115 4.115 4 C -0.179 4.179 5 C -0.131 4.131 6 C -0.156 4.156 7 C 0.301 3.699 8 O -0.406 6.406 9 N -0.347 5.347 10 C -0.066 4.066 11 C -0.008 4.008 12 C 0.023 3.977 13 H 0.056 0.944 14 C -0.194 4.194 15 C 0.022 3.978 16 N -0.327 5.327 17 C -0.345 4.345 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.564 5.564 21 Si 0.742 3.258 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.208 1.208 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.132 0.868 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.136 0.864 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.037 0.963 42 H 0.093 0.907 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.578 -1.536 17.664 21.739 hybrid contribution 1.008 0.514 -0.242 1.158 sum -11.570 -1.022 17.422 20.939 Atomic orbital electron populations 1.24378 0.95710 1.01914 1.01043 1.21862 0.95283 0.96118 0.99614 1.20523 0.93892 0.94324 1.02758 1.20884 1.00066 0.94554 1.02368 1.22820 0.93861 0.97892 0.98549 1.20845 0.98179 0.98288 0.98267 1.20399 0.81094 0.83342 0.85104 1.90717 1.67871 1.29226 1.52779 1.47912 1.39801 1.13586 1.33397 1.21790 1.02863 0.86596 0.95311 1.21918 0.90550 1.03172 0.85175 1.22421 0.91072 0.95328 0.88878 0.94354 1.23662 0.96878 0.99127 0.99684 1.22165 0.86198 0.95360 0.94123 1.45609 1.03653 1.81277 1.02163 1.18867 0.82327 1.38760 0.94559 0.90370 1.24793 0.98012 1.01974 0.95641 1.69839 1.34545 1.52230 0.99812 0.86136 0.84679 0.77911 0.77099 1.21497 1.21676 1.20758 0.88107 0.88271 0.86836 0.91297 0.91589 0.91455 0.86406 0.88239 0.88166 0.92604 0.91382 0.91008 0.89362 0.91112 0.90036 0.93467 0.96257 0.90675 0.93694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.64 14.11 28.88 0.41 -1.23 16 2 C -0.11 -1.10 9.83 -37.83 -0.37 -1.47 16 3 C -0.11 -1.20 5.98 -102.87 -0.62 -1.81 16 4 C -0.12 -1.02 8.52 36.00 0.31 -0.72 16 5 C -0.11 -1.28 8.45 -36.15 -0.31 -1.58 16 6 C -0.12 -1.21 4.28 -29.03 -0.12 -1.33 16 7 C 0.51 7.72 7.67 -10.99 -0.08 7.63 16 8 O -0.53 -10.20 15.54 5.55 0.09 -10.12 16 9 N -0.61 -8.98 2.87 -181.57 -0.52 -9.51 16 10 C 0.08 0.79 10.32 59.85 0.62 1.41 16 11 C 0.11 2.15 5.46 -4.04 -0.02 2.12 16 12 C 0.13 2.79 4.30 -72.40 -0.31 2.48 16 13 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 14 C -0.16 -3.35 8.03 -26.08 -0.21 -3.56 16 15 C 0.15 3.70 7.51 -8.37 -0.06 3.64 16 16 N -0.60 -15.82 3.65 -176.84 -0.64 -16.46 16 17 C -0.22 -6.15 10.55 -15.06 -0.16 -6.30 16 18 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 20 N -0.92 -27.89 11.43 55.49 0.63 -27.26 16 21 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H 0.10 0.76 6.06 -52.49 -0.32 0.45 16 26 H 0.10 0.70 8.06 -52.49 -0.42 0.28 16 27 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.47 6.19 -51.93 -0.32 0.15 16 30 H 0.07 0.47 6.72 -51.93 -0.35 0.12 16 31 H 0.12 1.41 8.05 -52.48 -0.42 0.99 16 32 H 0.10 0.79 7.41 -51.93 -0.38 0.41 16 33 H 0.10 0.89 5.78 -51.93 -0.30 0.59 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.48 6.36 -51.93 -0.33 0.15 16 36 H 0.07 0.71 7.97 -51.93 -0.41 0.29 16 37 H 0.09 1.87 7.00 -51.93 -0.36 1.51 16 38 H 0.07 1.31 7.98 -51.93 -0.41 0.89 16 39 H 0.08 1.87 7.94 -51.93 -0.41 1.46 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 2.09 6.94 -51.93 -0.36 1.73 16 43 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 352.27 15.07 5.31 5.31 Total: -1.00 -33.66 352.27 -8.09 -41.75 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -6.90 Total: -0.03 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.03 Total: -1.04 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.53 Total: -53.23 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.66 -8.09 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691054739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.053 kcal (2) G-P(sol) polarization free energy of solvation -33.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds