Wall clock time and date at job start Tue Mar 31 2020 00:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47116 * 119.99454 * 2 1 4 4 C 1.50697 * 120.00377 * 359.97438 * 3 2 1 5 5 C 1.32871 * 119.99454 * 180.02562 * 3 2 1 6 6 C 1.50709 * 119.99869 * 173.83657 * 5 3 2 7 7 C 1.50697 * 109.47253 * 233.87706 * 6 5 3 8 8 O 1.21288 * 120.00100 * 0.02562 * 7 6 5 9 9 N 1.34768 * 120.00187 * 180.02562 * 7 6 5 10 10 C 1.46506 * 120.00061 * 359.97438 * 9 7 6 11 11 C 1.46505 * 120.00309 * 180.02562 * 9 7 6 12 12 C 1.52999 * 109.46997 * 95.29210 * 11 9 7 13 13 H 1.08998 * 112.74088 * 43.64124 * 12 11 9 14 14 C 1.53497 * 113.51933 * 272.84835 * 12 11 9 15 15 C 1.53754 * 83.25827 * 218.97693 * 14 12 11 16 16 N 1.47064 * 113.46502 * 174.38883 * 12 11 9 17 17 C 1.36939 * 136.05917 * 321.92146 * 16 12 11 18 18 H 1.07997 * 120.00228 * 355.79831 * 17 16 12 19 19 C 1.38812 * 120.00076 * 176.07637 * 17 16 12 20 20 N 1.31624 * 120.00122 * 359.72058 * 19 17 16 21 21 Si 1.86799 * 119.99935 * 179.72589 * 19 17 16 22 22 H 1.48498 * 109.47134 * 89.99923 * 21 19 17 23 23 H 1.48508 * 109.46862 * 209.99451 * 21 19 17 24 24 H 1.48497 * 109.47320 * 329.99534 * 21 19 17 25 25 H 1.08002 * 120.00142 * 0.02562 * 1 2 3 26 26 H 1.07997 * 119.99804 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.00142 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47412 * 265.13822 * 4 3 2 29 29 H 1.08999 * 109.46851 * 25.13763 * 4 3 2 30 30 H 1.09006 * 109.46969 * 145.14080 * 4 3 2 31 31 H 1.08004 * 120.00377 * 353.83728 * 5 3 2 32 32 H 1.09004 * 109.46840 * 113.87732 * 6 5 3 33 33 H 1.08996 * 109.47152 * 353.87928 * 6 5 3 34 34 H 1.08998 * 109.47252 * 267.93299 * 10 9 7 35 35 H 1.08999 * 109.46523 * 27.93463 * 10 9 7 36 36 H 1.09001 * 109.47139 * 147.92888 * 10 9 7 37 37 H 1.08997 * 109.47017 * 335.29162 * 11 9 7 38 38 H 1.08997 * 109.47025 * 215.29329 * 11 9 7 39 39 H 1.09006 * 114.20714 * 332.73609 * 14 12 11 40 40 H 1.09003 * 114.20654 * 105.36121 * 14 12 11 41 41 H 1.09000 * 113.46467 * 271.50517 * 15 14 12 42 42 H 1.09001 * 113.55337 * 140.98617 * 15 14 12 43 43 H 0.96996 * 119.99953 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 1.3106 2.5792 -0.0006 5 6 3.3929 1.2741 -0.0005 6 6 4.1463 2.5718 -0.1406 7 6 5.1224 2.4651 -1.2838 8 8 5.1985 1.4366 -1.9223 9 7 5.9109 3.5123 -1.5967 10 6 5.8187 4.7547 -0.8259 11 6 6.8594 3.4087 -2.7084 12 6 6.2245 3.9844 -3.9758 13 1 5.6966 4.9207 -3.7947 14 6 5.3990 2.9603 -4.7670 15 6 6.0188 3.6699 -5.9820 16 7 7.1486 4.0446 -5.1183 17 6 8.4757 4.3299 -5.2992 18 1 9.0769 4.6552 -4.4631 19 6 9.0468 4.2065 -6.5583 20 7 8.3141 3.8100 -7.5774 21 14 10.8553 4.6031 -6.8066 22 1 11.6649 3.3768 -6.5920 23 1 11.0676 5.1007 -8.1896 24 1 11.2710 5.6469 -5.8356 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8687 -0.9353 0.0004 28 1 1.2048 2.9372 -1.0246 29 1 0.3231 2.4287 0.4356 30 1 1.8591 3.3156 0.5869 31 1 3.9330 0.3442 0.0995 32 1 4.6886 2.7785 0.7821 33 1 3.4430 3.3808 -0.3378 34 1 5.1039 5.4257 -1.3023 35 1 5.4862 4.5297 0.1874 36 1 6.7974 5.2331 -0.7893 37 1 7.1136 2.3616 -2.8728 38 1 7.7632 3.9686 -2.4682 39 1 5.7226 1.9278 -4.6352 40 1 4.3205 3.0889 -4.6751 41 1 5.4366 4.5233 -6.3298 42 1 6.2955 2.9909 -6.7886 43 1 8.7133 3.7235 -8.4571 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691054739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:27 Heat of formation + Delta-G solvation = 39.089044 kcal Electronic energy + Delta-G solvation = -21650.101859 eV Core-core repulsion = 18504.585729 eV Total energy + Delta-G solvation = -3145.516130 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.09228 -39.68411 -37.76970 -36.39814 -34.28679 -33.41296 -30.58344 -29.92093 -29.13128 -27.65571 -26.88462 -25.40765 -23.97239 -21.91729 -21.03497 -19.95245 -18.77413 -18.74741 -17.93857 -17.39936 -16.89186 -16.84846 -16.21219 -15.82584 -15.36240 -15.07417 -14.75839 -14.26677 -14.07091 -13.89093 -13.77631 -13.60387 -13.44859 -13.31768 -12.98614 -12.95678 -12.67747 -12.57514 -12.41069 -12.25789 -12.21766 -11.79596 -11.70482 -11.67091 -11.35522 -11.21775 -10.86718 -10.72712 -9.56517 -9.07181 -8.91031 -7.88718 -5.24164 0.46621 1.44635 1.48031 1.55821 1.73043 1.99749 2.27854 2.49653 3.31014 3.43291 3.74227 3.80811 3.87953 4.04231 4.22887 4.33100 4.34149 4.39598 4.41390 4.47576 4.50480 4.61959 4.69118 4.79274 4.83506 4.86063 4.93354 4.98919 5.01069 5.04048 5.07810 5.17825 5.22307 5.48958 5.51051 5.53150 5.63061 5.73831 5.82646 5.94116 6.08454 6.52892 6.89486 7.29414 7.60558 8.61854 9.28576 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030997 B = 0.003466 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.094400 B = 8076.141558 C = 8471.324210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.144 4.144 3 C -0.109 4.109 4 C -0.124 4.124 5 C -0.141 4.141 6 C -0.100 4.100 7 C 0.506 3.494 8 O -0.582 6.582 9 N -0.612 5.612 10 C 0.070 3.930 11 C 0.129 3.871 12 C 0.139 3.861 13 H 0.057 0.943 14 C -0.133 4.133 15 C 0.143 3.857 16 N -0.629 5.629 17 C -0.223 4.223 18 H 0.090 0.910 19 C -0.072 4.072 20 N -0.956 5.956 21 Si 0.982 3.018 22 H -0.287 1.287 23 H -0.296 1.296 24 H -0.263 1.263 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.107 0.893 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.021 0.979 42 H 0.039 0.961 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.076 0.685 20.857 25.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.110 4.110 4 C -0.181 4.181 5 C -0.160 4.160 6 C -0.139 4.139 7 C 0.296 3.704 8 O -0.462 6.462 9 N -0.345 5.345 10 C -0.072 4.072 11 C 0.004 3.996 12 C 0.032 3.968 13 H 0.075 0.925 14 C -0.171 4.171 15 C 0.017 3.983 16 N -0.355 5.355 17 C -0.351 4.351 18 H 0.108 0.892 19 C -0.265 4.265 20 N -0.605 5.605 21 Si 0.809 3.191 22 H -0.214 1.214 23 H -0.222 1.222 24 H -0.188 1.188 25 H 0.132 0.868 26 H 0.130 0.870 27 H 0.125 0.875 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.149 0.851 33 H 0.142 0.858 34 H 0.085 0.915 35 H 0.124 0.876 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.039 0.961 42 H 0.057 0.943 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.711 0.229 20.369 24.555 hybrid contribution 1.205 -0.077 -1.011 1.575 sum -12.506 0.152 19.358 23.047 Atomic orbital electron populations 1.24640 0.95173 1.03202 0.98104 1.21997 0.96117 0.96136 1.01979 1.20821 0.93831 0.95461 1.00847 1.20968 1.00784 0.93653 1.02646 1.22778 0.94374 0.97808 1.01018 1.20821 0.97385 0.98445 0.97255 1.21313 0.81133 0.82378 0.85614 1.90700 1.69420 1.31295 1.54788 1.47966 1.38722 1.15364 1.32426 1.22130 1.03702 0.84647 0.96719 1.21412 0.91500 1.00834 0.85814 1.22499 0.89765 0.95692 0.88808 0.92525 1.23389 0.98259 0.97888 0.97556 1.22128 0.86701 0.95130 0.94332 1.45926 1.03780 1.81364 1.04462 1.19325 0.83585 1.37344 0.94867 0.89220 1.25710 1.02515 1.02713 0.95552 1.70049 1.36342 1.54143 0.99975 0.85034 0.79289 0.77894 0.76843 1.21430 1.22244 1.18786 0.86839 0.86969 0.87490 0.91573 0.90310 0.89526 0.88425 0.85140 0.85773 0.91474 0.87594 0.90655 0.92630 0.90812 0.91990 0.90868 0.96086 0.94259 0.94404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 14.11 66.64 0.94 -1.64 16 2 C -0.14 -2.74 9.83 23.43 0.23 -2.51 16 3 C -0.11 -2.11 5.98 -18.71 -0.11 -2.22 16 4 C -0.12 -1.67 8.52 71.23 0.61 -1.06 16 5 C -0.14 -3.05 8.45 24.51 0.21 -2.85 16 6 C -0.10 -1.80 4.28 29.10 0.12 -1.67 16 7 C 0.51 14.52 7.67 87.66 0.67 15.19 16 8 O -0.58 -22.82 15.54 -3.06 -0.05 -22.86 16 9 N -0.61 -16.68 2.87 -846.75 -2.43 -19.12 16 10 C 0.07 1.14 10.32 127.77 1.32 2.46 16 11 C 0.13 4.76 5.46 86.38 0.47 5.23 16 12 C 0.14 5.84 4.30 41.79 0.18 6.02 16 13 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 14 C -0.13 -5.76 8.03 31.02 0.25 -5.51 16 15 C 0.14 7.38 7.51 83.27 0.63 8.00 16 16 N -0.63 -33.48 3.65 -713.40 -2.60 -36.08 16 17 C -0.22 -12.68 10.55 84.03 0.89 -11.79 16 18 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 19 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 20 N -0.96 -59.98 11.43 21.65 0.25 -59.73 16 21 Si 0.98 46.52 29.55 68.60 2.03 48.55 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 24 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 25 H 0.11 1.37 6.06 -2.91 -0.02 1.35 16 26 H 0.11 1.33 8.06 -2.91 -0.02 1.31 16 27 H 0.11 2.08 8.06 -2.91 -0.02 2.05 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 0.85 6.19 -2.39 -0.01 0.84 16 30 H 0.09 0.83 6.72 -2.38 -0.02 0.81 16 31 H 0.10 2.44 8.05 -2.91 -0.02 2.42 16 32 H 0.13 1.52 7.41 -2.38 -0.02 1.50 16 33 H 0.12 1.65 5.78 -2.39 -0.01 1.64 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.11 0.95 6.36 -2.39 -0.02 0.94 16 36 H 0.07 1.21 7.97 -2.39 -0.02 1.19 16 37 H 0.06 2.42 7.00 -2.39 -0.02 2.40 16 38 H 0.07 2.66 7.98 -2.39 -0.02 2.64 16 39 H 0.06 2.94 7.94 -2.38 -0.02 2.92 16 40 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 41 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.04 2.29 6.94 -2.39 -0.02 2.27 16 43 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -76.22 352.27 5.04 -71.18 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.97 Total: 14.17 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 6.87 Total: 3.89 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -4.79 Total: -114.93 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.05 Total: -22.86 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -76.22 5.04 -71.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691054739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.272 kcal (2) G-P(sol) polarization free energy of solvation -76.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds