Wall clock time and date at job start Tue Mar 31 2020 00:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32872 * 1 3 3 C 1.47108 * 120.00389 * 2 1 4 4 C 1.50701 * 120.00060 * 359.97438 * 3 2 1 5 5 C 1.32872 * 120.00389 * 179.97438 * 3 2 1 6 6 C 1.50696 * 120.00302 * 173.48194 * 5 3 2 7 7 C 1.50698 * 109.47146 * 239.67014 * 6 5 3 8 8 O 1.21283 * 120.00442 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00134 * 180.02562 * 7 6 5 10 10 C 1.46504 * 120.00235 * 4.73847 * 9 7 6 11 11 C 1.46503 * 120.00442 * 184.73959 * 9 7 6 12 12 C 1.53008 * 109.47051 * 92.59892 * 11 9 7 13 13 H 1.09000 * 112.73546 * 316.51432 * 12 11 9 14 14 C 1.53496 * 113.46520 * 87.32971 * 12 11 9 15 15 C 1.53495 * 83.34168 * 140.84815 * 14 12 11 16 16 N 1.47063 * 113.46638 * 185.76912 * 12 11 9 17 17 C 1.36938 * 136.06014 * 38.06264 * 16 12 11 18 18 H 1.07994 * 119.99949 * 342.65845 * 17 16 12 19 19 C 1.38807 * 120.00064 * 162.66433 * 17 16 12 20 20 N 1.31620 * 120.00101 * 168.64168 * 19 17 16 21 21 Si 1.86802 * 120.00005 * 348.63702 * 19 17 16 22 22 H 1.48500 * 109.47161 * 84.66159 * 21 19 17 23 23 H 1.48502 * 109.47424 * 204.66555 * 21 19 17 24 24 H 1.48507 * 109.47310 * 324.66216 * 21 19 17 25 25 H 1.08000 * 119.99692 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.00445 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.99692 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47486 * 264.69235 * 4 3 2 29 29 H 1.09006 * 109.46717 * 24.69746 * 4 3 2 30 30 H 1.08997 * 109.47173 * 144.68665 * 4 3 2 31 31 H 1.07998 * 119.99516 * 353.48636 * 5 3 2 32 32 H 1.08993 * 109.47427 * 119.66690 * 6 5 3 33 33 H 1.09007 * 109.47097 * 359.66566 * 6 5 3 34 34 H 1.09000 * 109.46859 * 89.99598 * 10 9 7 35 35 H 1.08997 * 109.47603 * 210.00565 * 10 9 7 36 36 H 1.08998 * 109.46708 * 330.00504 * 10 9 7 37 37 H 1.08991 * 109.47271 * 212.60025 * 11 9 7 38 38 H 1.08995 * 109.46706 * 332.60258 * 11 9 7 39 39 H 1.09004 * 114.20613 * 254.43494 * 14 12 11 40 40 H 1.08996 * 114.20401 * 27.26251 * 14 12 11 41 41 H 1.09003 * 113.46881 * 219.15196 * 15 14 12 42 42 H 1.09002 * 113.52068 * 88.72109 * 15 14 12 43 43 H 0.97005 * 119.99738 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2739 0.0000 4 6 1.3109 2.5791 -0.0006 5 6 3.3931 1.2739 0.0005 6 6 4.1467 2.5705 -0.1476 7 6 5.0197 2.5068 -1.3743 8 8 5.0294 1.5068 -2.0605 9 7 5.7905 3.5607 -1.7084 10 6 5.8595 4.7271 -0.8247 11 6 6.5594 3.5399 -2.9553 12 6 5.7372 4.1858 -4.0723 13 1 4.6949 3.8667 -4.0667 14 6 5.9111 5.7086 -4.1571 15 6 5.8757 5.4490 -5.6695 16 7 6.3715 4.0917 -5.3958 17 6 7.1027 3.1535 -6.0743 18 1 7.5657 2.3385 -5.5381 19 6 7.2488 3.2503 -7.4513 20 7 8.1243 2.4909 -8.0751 21 14 6.2028 4.4581 -8.4190 22 1 6.8420 5.7982 -8.3928 23 1 6.0832 3.9940 -9.8246 24 1 4.8514 4.5422 -7.8089 25 1 -0.5399 0.9353 -0.0004 26 1 -0.5401 -0.9352 -0.0004 27 1 1.8687 -0.9353 0.0004 28 1 1.2120 2.9411 -1.0239 29 1 0.3205 2.4270 0.4285 30 1 1.8553 3.3131 0.5935 31 1 3.9329 0.3447 0.1070 32 1 4.7685 2.7320 0.7328 33 1 3.4384 3.3930 -0.2481 34 1 6.6705 4.5931 -0.1089 35 1 6.0431 5.6225 -1.4185 36 1 4.9161 4.8335 -0.2892 37 1 7.4872 4.0955 -2.8193 38 1 6.7893 2.5087 -3.2231 39 1 5.0605 6.2772 -3.7812 40 1 6.8709 6.0699 -3.7880 41 1 6.5792 6.0629 -6.2319 42 1 4.8704 5.4672 -6.0906 43 1 8.2267 2.5588 -9.0374 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691054740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:31 Heat of formation + Delta-G solvation = 64.555628 kcal Electronic energy + Delta-G solvation = -21709.948789 eV Core-core repulsion = 18565.536973 eV Total energy + Delta-G solvation = -3144.411816 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.91631 -38.40989 -36.97619 -35.20610 -32.65044 -32.20446 -29.60828 -28.47582 -28.25903 -26.87098 -25.94310 -23.33288 -22.77523 -21.06626 -19.44246 -18.88382 -17.97051 -17.10787 -16.72236 -16.33565 -15.94794 -15.43294 -14.97426 -14.42976 -14.21691 -13.69055 -13.50009 -13.30049 -13.11156 -12.99786 -12.76456 -12.57675 -12.41294 -12.05114 -11.79326 -11.74243 -11.66481 -11.56845 -11.13261 -10.94568 -10.71353 -10.63210 -10.22628 -10.09536 -9.96491 -9.61436 -9.32213 -8.87610 -8.34762 -8.28936 -7.08200 -5.85914 -3.21666 1.22301 2.79887 2.88378 3.26724 3.37103 3.47344 3.48835 4.53187 4.58181 4.67380 4.74368 4.79243 4.98027 5.09651 5.15364 5.17949 5.21225 5.28559 5.31856 5.41754 5.45896 5.55952 5.64684 5.69390 5.71803 5.82047 5.83772 5.94914 6.12446 6.23024 6.25012 6.33006 6.35854 6.46722 6.52590 6.56605 6.65829 6.82600 7.06924 7.25711 7.58351 8.37727 8.42773 8.74581 9.68546 10.38064 11.31165 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019954 B = 0.003997 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.865271 B = 7002.999136 C = 7457.067194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 C -0.112 4.112 4 C -0.123 4.123 5 C -0.115 4.115 6 C -0.116 4.116 7 C 0.511 3.489 8 O -0.528 6.528 9 N -0.614 5.614 10 C 0.078 3.922 11 C 0.115 3.885 12 C 0.134 3.866 13 H 0.047 0.953 14 C -0.153 4.153 15 C 0.097 3.903 16 N -0.616 5.616 17 C -0.220 4.220 18 H 0.100 0.900 19 C 0.017 3.983 20 N -0.921 5.921 21 Si 0.886 3.114 22 H -0.286 1.286 23 H -0.299 1.299 24 H -0.272 1.272 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.041 0.959 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.387 5.066 20.860 24.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.129 4.129 3 C -0.113 4.113 4 C -0.179 4.179 5 C -0.133 4.133 6 C -0.155 4.155 7 C 0.299 3.701 8 O -0.403 6.403 9 N -0.349 5.349 10 C -0.066 4.066 11 C -0.008 4.008 12 C 0.026 3.974 13 H 0.064 0.936 14 C -0.192 4.192 15 C -0.028 4.028 16 N -0.343 5.343 17 C -0.346 4.346 18 H 0.117 0.883 19 C -0.181 4.181 20 N -0.567 5.567 21 Si 0.717 3.283 22 H -0.213 1.213 23 H -0.227 1.227 24 H -0.197 1.197 25 H 0.119 0.881 26 H 0.118 0.882 27 H 0.132 0.868 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.135 0.865 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.058 0.942 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.154 4.298 20.177 23.452 hybrid contribution -0.595 0.592 -0.825 1.177 sum -11.749 4.889 19.352 23.161 Atomic orbital electron populations 1.24381 0.95704 1.01927 1.00959 1.21863 0.95300 0.96129 0.99643 1.20527 0.93913 0.94340 1.02474 1.20891 1.00084 0.94556 1.02364 1.22789 0.93921 0.97842 0.98766 1.20840 0.99039 0.98286 0.97355 1.20480 0.80274 0.82937 0.86444 1.90756 1.65338 1.30886 1.53360 1.47885 1.46891 1.17278 1.22818 1.21803 1.01641 0.88871 0.94272 1.21775 0.93517 1.03720 0.81768 1.22406 0.95320 0.92308 0.87349 0.93570 1.23606 1.00888 0.96711 0.97957 1.22566 0.97577 0.87831 0.94831 1.46202 1.59611 1.13772 1.14754 1.18654 1.21371 1.05032 0.89530 0.88289 1.24911 0.99044 0.98143 0.95972 1.69726 1.36161 1.41723 1.09056 0.86770 0.81712 0.80680 0.79172 1.21297 1.22659 1.19706 0.88110 0.88236 0.86801 0.91319 0.91551 0.91424 0.86481 0.88264 0.88088 0.92768 0.90612 0.91425 0.90384 0.89277 0.92104 0.89839 0.92936 0.94154 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.73 14.12 28.88 0.41 -1.32 16 2 C -0.11 -1.17 9.83 -37.83 -0.37 -1.54 16 3 C -0.11 -1.22 5.98 -102.87 -0.62 -1.84 16 4 C -0.12 -1.07 8.57 36.01 0.31 -0.76 16 5 C -0.11 -1.34 8.45 -36.16 -0.31 -1.64 16 6 C -0.12 -1.21 4.31 -29.04 -0.13 -1.33 16 7 C 0.51 7.82 7.66 -10.99 -0.08 7.74 16 8 O -0.53 -10.83 15.55 5.55 0.09 -10.74 16 9 N -0.61 -8.64 2.87 -181.57 -0.52 -9.16 16 10 C 0.08 0.69 10.27 59.85 0.61 1.31 16 11 C 0.12 2.06 5.42 -4.04 -0.02 2.04 16 12 C 0.13 2.66 4.31 -72.40 -0.31 2.35 16 13 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 14 C -0.15 -2.53 7.33 -26.22 -0.19 -2.72 16 15 C 0.10 2.08 5.60 -8.52 -0.05 2.03 16 16 N -0.62 -15.29 3.40 -177.01 -0.60 -15.89 16 17 C -0.22 -6.45 11.00 -15.06 -0.17 -6.61 16 18 H 0.10 3.10 8.06 -52.49 -0.42 2.67 16 19 C 0.02 0.51 5.50 -17.43 -0.10 0.41 16 20 N -0.92 -29.42 13.97 55.49 0.78 -28.64 16 21 Si 0.89 23.33 25.21 -169.99 -4.29 19.04 16 22 H -0.29 -7.27 6.88 56.52 0.39 -6.88 16 23 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 24 H -0.27 -6.98 5.99 56.52 0.34 -6.64 16 25 H 0.10 0.81 6.05 -52.49 -0.32 0.49 16 26 H 0.10 0.75 8.06 -52.49 -0.42 0.33 16 27 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.49 6.17 -51.93 -0.32 0.17 16 30 H 0.07 0.48 6.65 -51.93 -0.35 0.13 16 31 H 0.12 1.43 8.05 -52.49 -0.42 1.00 16 32 H 0.10 0.78 8.05 -51.93 -0.42 0.36 16 33 H 0.10 0.87 5.10 -51.93 -0.26 0.60 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.65 7.37 -51.93 -0.38 0.26 16 36 H 0.07 0.44 6.44 -51.93 -0.33 0.11 16 37 H 0.08 1.30 7.81 -51.93 -0.41 0.89 16 38 H 0.09 1.94 7.29 -51.93 -0.38 1.56 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.27 7.93 -51.93 -0.41 0.86 16 41 H 0.05 1.15 6.84 -51.93 -0.35 0.79 16 42 H 0.04 0.88 6.84 -51.93 -0.36 0.52 16 43 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 LS Contribution 345.00 15.07 5.20 5.20 Total: -1.00 -35.63 345.00 -7.24 -42.87 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.88 Total: -0.79 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -1.01 Total: -1.89 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.35 Total: -53.69 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -4.29 Total: 19.04 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.63 -7.24 -42.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691054740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.424 kcal (2) G-P(sol) polarization free energy of solvation -35.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds