Wall clock time and date at job start Tue Mar 31 2020 00:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32872 * 1 3 3 C 1.47108 * 120.00389 * 2 1 4 4 C 1.50701 * 120.00060 * 359.97438 * 3 2 1 5 5 C 1.32872 * 120.00389 * 179.97438 * 3 2 1 6 6 C 1.50696 * 120.00302 * 173.48194 * 5 3 2 7 7 C 1.50698 * 109.47146 * 239.67014 * 6 5 3 8 8 O 1.21283 * 120.00442 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00134 * 180.02562 * 7 6 5 10 10 C 1.46504 * 120.00235 * 4.73847 * 9 7 6 11 11 C 1.46503 * 120.00442 * 184.73959 * 9 7 6 12 12 C 1.53008 * 109.47051 * 92.59892 * 11 9 7 13 13 H 1.09000 * 112.73546 * 316.51432 * 12 11 9 14 14 C 1.53496 * 113.46520 * 87.32971 * 12 11 9 15 15 C 1.53495 * 83.34168 * 140.84815 * 14 12 11 16 16 N 1.47063 * 113.46638 * 185.76912 * 12 11 9 17 17 C 1.36938 * 136.06014 * 38.06264 * 16 12 11 18 18 H 1.07994 * 119.99949 * 342.65845 * 17 16 12 19 19 C 1.38807 * 120.00064 * 162.66433 * 17 16 12 20 20 N 1.31620 * 120.00101 * 168.64168 * 19 17 16 21 21 Si 1.86802 * 120.00005 * 348.63702 * 19 17 16 22 22 H 1.48500 * 109.47161 * 84.66159 * 21 19 17 23 23 H 1.48502 * 109.47424 * 204.66555 * 21 19 17 24 24 H 1.48507 * 109.47310 * 324.66216 * 21 19 17 25 25 H 1.08000 * 119.99692 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.00445 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.99692 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47486 * 264.69235 * 4 3 2 29 29 H 1.09006 * 109.46717 * 24.69746 * 4 3 2 30 30 H 1.08997 * 109.47173 * 144.68665 * 4 3 2 31 31 H 1.07998 * 119.99516 * 353.48636 * 5 3 2 32 32 H 1.08993 * 109.47427 * 119.66690 * 6 5 3 33 33 H 1.09007 * 109.47097 * 359.66566 * 6 5 3 34 34 H 1.09000 * 109.46859 * 89.99598 * 10 9 7 35 35 H 1.08997 * 109.47603 * 210.00565 * 10 9 7 36 36 H 1.08998 * 109.46708 * 330.00504 * 10 9 7 37 37 H 1.08991 * 109.47271 * 212.60025 * 11 9 7 38 38 H 1.08995 * 109.46706 * 332.60258 * 11 9 7 39 39 H 1.09004 * 114.20613 * 254.43494 * 14 12 11 40 40 H 1.08996 * 114.20401 * 27.26251 * 14 12 11 41 41 H 1.09003 * 113.46881 * 219.15196 * 15 14 12 42 42 H 1.09002 * 113.52068 * 88.72109 * 15 14 12 43 43 H 0.97005 * 119.99738 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2739 0.0000 4 6 1.3109 2.5791 -0.0006 5 6 3.3931 1.2739 0.0005 6 6 4.1467 2.5705 -0.1476 7 6 5.0197 2.5068 -1.3743 8 8 5.0294 1.5068 -2.0605 9 7 5.7905 3.5607 -1.7084 10 6 5.8595 4.7271 -0.8247 11 6 6.5594 3.5399 -2.9553 12 6 5.7372 4.1858 -4.0723 13 1 4.6949 3.8667 -4.0667 14 6 5.9111 5.7086 -4.1571 15 6 5.8757 5.4490 -5.6695 16 7 6.3715 4.0917 -5.3958 17 6 7.1027 3.1535 -6.0743 18 1 7.5657 2.3385 -5.5381 19 6 7.2488 3.2503 -7.4513 20 7 8.1243 2.4909 -8.0751 21 14 6.2028 4.4581 -8.4190 22 1 6.8420 5.7982 -8.3928 23 1 6.0832 3.9940 -9.8246 24 1 4.8514 4.5422 -7.8089 25 1 -0.5399 0.9353 -0.0004 26 1 -0.5401 -0.9352 -0.0004 27 1 1.8687 -0.9353 0.0004 28 1 1.2120 2.9411 -1.0239 29 1 0.3205 2.4270 0.4285 30 1 1.8553 3.3131 0.5935 31 1 3.9329 0.3447 0.1070 32 1 4.7685 2.7320 0.7328 33 1 3.4384 3.3930 -0.2481 34 1 6.6705 4.5931 -0.1089 35 1 6.0431 5.6225 -1.4185 36 1 4.9161 4.8335 -0.2892 37 1 7.4872 4.0955 -2.8193 38 1 6.7893 2.5087 -3.2231 39 1 5.0605 6.2772 -3.7812 40 1 6.8709 6.0699 -3.7880 41 1 6.5792 6.0629 -6.2319 42 1 4.8704 5.4672 -6.0906 43 1 8.2267 2.5588 -9.0374 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691054740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:31 Heat of formation + Delta-G solvation = 40.221830 kcal Electronic energy + Delta-G solvation = -21711.003981 eV Core-core repulsion = 18565.536973 eV Total energy + Delta-G solvation = -3145.467009 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.17001 -39.96299 -37.81568 -36.44896 -34.45326 -33.47805 -30.83260 -30.30954 -29.23029 -27.67889 -26.95542 -25.24186 -24.22774 -21.99803 -21.15296 -20.00847 -18.88184 -18.75845 -18.00478 -17.59482 -17.09516 -17.06214 -16.27786 -15.73268 -15.49690 -15.06349 -14.88884 -14.55301 -14.21468 -14.10085 -13.95709 -13.68747 -13.58159 -13.42091 -13.25768 -13.04735 -12.69508 -12.58078 -12.49881 -12.24726 -12.03219 -11.94508 -11.77710 -11.72205 -11.40134 -11.19217 -11.02766 -10.79107 -9.61656 -9.11862 -9.10713 -8.16974 -5.48830 0.42116 1.25952 1.33657 1.41451 1.67211 1.95856 2.26272 2.39014 3.07030 3.12773 3.60139 3.72683 3.80707 3.99890 4.16144 4.23543 4.28860 4.38568 4.40540 4.44307 4.50580 4.57884 4.60881 4.67856 4.80099 4.82920 4.89933 4.92192 4.96434 4.98326 5.00396 5.06564 5.13154 5.27555 5.46584 5.48202 5.58821 5.64326 5.78368 6.04744 6.14942 6.48586 6.52171 7.25796 7.41025 8.27845 9.04768 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019954 B = 0.003997 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.865271 B = 7002.999136 C = 7457.067194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.147 4.147 3 C -0.109 4.109 4 C -0.124 4.124 5 C -0.145 4.145 6 C -0.098 4.098 7 C 0.501 3.499 8 O -0.597 6.597 9 N -0.610 5.610 10 C 0.067 3.933 11 C 0.127 3.873 12 C 0.130 3.870 13 H 0.033 0.967 14 C -0.111 4.111 15 C 0.084 3.916 16 N -0.648 5.648 17 C -0.210 4.210 18 H 0.056 0.944 19 C -0.050 4.050 20 N -0.972 5.972 21 Si 0.955 3.045 22 H -0.266 1.266 23 H -0.305 1.305 24 H -0.262 1.262 25 H 0.115 0.885 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.033 0.967 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.049 0.951 42 H 0.044 0.956 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.794 9.003 23.285 28.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.109 4.109 4 C -0.180 4.180 5 C -0.164 4.164 6 C -0.136 4.136 7 C 0.291 3.709 8 O -0.477 6.477 9 N -0.342 5.342 10 C -0.074 4.074 11 C 0.002 3.998 12 C 0.023 3.977 13 H 0.050 0.950 14 C -0.149 4.149 15 C -0.041 4.041 16 N -0.376 5.376 17 C -0.338 4.338 18 H 0.073 0.927 19 C -0.243 4.243 20 N -0.621 5.621 21 Si 0.783 3.217 22 H -0.192 1.192 23 H -0.233 1.233 24 H -0.186 1.186 25 H 0.133 0.867 26 H 0.131 0.869 27 H 0.124 0.876 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.052 0.948 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.583 8.311 22.684 27.716 hybrid contribution 0.093 -0.730 -1.449 1.625 sum -13.490 7.581 21.235 26.275 Atomic orbital electron populations 1.24649 0.95102 1.03280 0.97912 1.22011 0.96212 0.96173 1.02132 1.20855 0.93891 0.95560 1.00615 1.20975 1.00878 0.93580 1.02554 1.22791 0.94507 0.97948 1.01143 1.20817 0.98785 0.98382 0.95658 1.21492 0.80181 0.82020 0.87236 1.90731 1.67524 1.33611 1.55874 1.47970 1.45570 1.18821 1.21870 1.22221 1.04373 0.86787 0.94008 1.21377 0.94505 1.00372 0.83534 1.22605 0.94189 0.95548 0.85383 0.94984 1.23440 1.03972 0.93766 0.93711 1.22837 0.97131 0.85541 0.98550 1.46410 1.59902 1.14664 1.16616 1.18483 1.20954 1.04601 0.89727 0.92661 1.25680 1.00585 1.00964 0.97058 1.69892 1.38381 1.44623 1.09192 0.85674 0.80222 0.78974 0.76864 1.19185 1.23331 1.18641 0.86696 0.86927 0.87641 0.91844 0.90175 0.89099 0.88685 0.84979 0.85247 0.90951 0.89381 0.88007 0.88957 0.94825 0.87273 0.87768 0.93279 0.93874 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 14.12 66.64 0.94 -1.84 16 2 C -0.15 -3.04 9.83 23.42 0.23 -2.81 16 3 C -0.11 -2.26 5.98 -18.71 -0.11 -2.37 16 4 C -0.12 -1.76 8.57 71.24 0.61 -1.15 16 5 C -0.15 -3.36 8.45 24.51 0.21 -3.15 16 6 C -0.10 -1.80 4.31 29.10 0.13 -1.68 16 7 C 0.50 15.16 7.66 87.66 0.67 15.83 16 8 O -0.60 -26.07 15.55 -3.04 -0.05 -26.12 16 9 N -0.61 -16.09 2.87 -846.75 -2.43 -18.52 16 10 C 0.07 0.87 10.27 127.77 1.31 2.19 16 11 C 0.13 4.57 5.42 86.38 0.47 5.03 16 12 C 0.13 5.01 4.31 41.79 0.18 5.19 16 13 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 14 C -0.11 -3.17 7.33 30.93 0.23 -2.94 16 15 C 0.08 3.35 5.60 83.17 0.47 3.82 16 16 N -0.65 -32.26 3.40 -713.93 -2.43 -34.69 16 17 C -0.21 -12.88 11.00 84.03 0.92 -11.96 16 18 H 0.06 3.77 8.06 -2.91 -0.02 3.74 16 19 C -0.05 -3.13 5.50 84.86 0.47 -2.67 16 20 N -0.97 -64.94 13.97 21.65 0.30 -64.64 16 21 Si 0.96 48.90 25.21 68.60 1.73 50.62 16 22 H -0.27 -12.65 6.88 99.48 0.68 -11.96 16 23 H -0.31 -15.79 7.11 99.48 0.71 -15.08 16 24 H -0.26 -12.77 5.99 99.48 0.60 -12.18 16 25 H 0.12 1.51 6.05 -2.91 -0.02 1.49 16 26 H 0.11 1.48 8.06 -2.91 -0.02 1.46 16 27 H 0.11 2.25 8.06 -2.91 -0.02 2.23 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 29 H 0.08 0.91 6.17 -2.38 -0.01 0.89 16 30 H 0.09 0.86 6.65 -2.39 -0.02 0.84 16 31 H 0.09 2.52 8.05 -2.91 -0.02 2.50 16 32 H 0.13 1.56 8.05 -2.39 -0.02 1.54 16 33 H 0.13 1.64 5.10 -2.38 -0.01 1.63 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.09 0.98 7.37 -2.39 -0.02 0.97 16 36 H 0.10 0.69 6.44 -2.39 -0.02 0.67 16 37 H 0.09 2.99 7.81 -2.39 -0.02 2.98 16 38 H 0.03 1.58 7.29 -2.39 -0.02 1.56 16 39 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.10 2.61 7.93 -2.39 -0.02 2.59 16 41 H 0.05 2.00 6.84 -2.39 -0.02 1.98 16 42 H 0.04 1.73 6.84 -2.39 -0.02 1.71 16 43 H 0.26 16.53 8.31 -92.70 -0.77 15.76 16 Total: -1.00 -86.01 345.00 4.69 -81.32 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.85 Total: 10.53 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 6.72 Total: 1.49 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -4.56 Total: -117.85 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.05 Total: -26.12 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 1.73 Total: 50.62 kcal Total: -86.01 4.69 -81.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691054740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.546 kcal (2) G-P(sol) polarization free energy of solvation -86.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds