Wall clock time and date at job start Tue Mar 31 2020 00:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32990 * 119.99823 * 2 1 4 4 C 1.47107 * 119.99603 * 172.34242 * 3 2 1 5 5 O 1.21609 * 120.00139 * 354.00182 * 4 3 2 6 6 N 1.34774 * 119.99703 * 174.00067 * 4 3 2 7 7 C 1.46502 * 119.99962 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.47439 * 179.97438 * 7 6 4 9 9 H 1.09005 * 112.84833 * 314.67412 * 8 7 6 10 10 C 1.53790 * 113.61007 * 85.86148 * 8 7 6 11 11 C 1.53961 * 87.01568 * 139.95530 * 10 8 7 12 12 H 1.08997 * 113.66566 * 220.06789 * 11 10 8 13 13 N 1.46504 * 113.61277 * 89.19961 * 11 10 8 14 14 C 1.36938 * 119.99637 * 107.46838 * 13 11 10 15 15 H 1.07997 * 120.00372 * 359.97438 * 14 13 11 16 16 C 1.38808 * 119.99478 * 179.97438 * 14 13 11 17 17 N 1.31618 * 120.00450 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99738 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47223 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47215 * 120.00123 * 18 16 14 21 21 H 1.48498 * 109.47236 * 240.00286 * 18 16 14 22 22 C 1.53774 * 113.61629 * 183.46843 * 8 7 6 23 23 C 1.50698 * 119.99505 * 179.97438 * 2 1 3 24 24 C 1.53002 * 117.50128 * 288.02267 * 23 2 1 25 25 C 1.52994 * 117.50449 * 356.64780 * 23 2 1 26 26 H 1.09000 * 109.47093 * 270.00115 * 1 2 3 27 27 H 1.08996 * 109.47290 * 30.00138 * 1 2 3 28 28 H 1.08999 * 109.47461 * 150.00298 * 1 2 3 29 29 H 1.08002 * 120.00532 * 352.33492 * 3 2 1 30 30 H 0.97006 * 120.00413 * 359.97438 * 6 4 3 31 31 H 1.08996 * 109.47136 * 300.00422 * 7 6 4 32 32 H 1.09008 * 109.47014 * 60.00019 * 7 6 4 33 33 H 1.08992 * 113.61450 * 254.53063 * 10 8 7 34 34 H 1.08996 * 113.61384 * 25.43805 * 10 8 7 35 35 H 0.97000 * 119.99970 * 287.46455 * 13 11 10 36 36 H 0.96996 * 120.00021 * 180.02562 * 17 16 14 37 37 H 1.09000 * 113.61937 * 334.57329 * 22 8 7 38 38 H 1.09005 * 113.61398 * 105.47619 * 22 8 7 39 39 H 1.09002 * 115.56005 * 142.34122 * 23 2 1 40 40 H 1.09010 * 117.49601 * 0.02562 * 24 23 2 41 41 H 1.08998 * 117.50244 * 214.98145 * 24 23 2 42 42 H 1.09002 * 117.50267 * 145.01701 * 25 23 2 43 43 H 1.09001 * 117.49440 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6331 1.1574 0.1698 5 8 4.2204 0.1220 0.4188 6 7 4.3210 2.3100 0.0493 7 6 5.7762 2.3158 0.2189 8 6 6.3059 3.7390 0.0320 9 1 5.8768 4.2397 -0.8359 10 6 6.2632 4.5856 1.3152 11 6 7.6349 5.1449 0.8958 12 1 8.3305 5.2660 1.7262 13 7 7.5484 6.3364 0.0478 14 6 7.8772 7.5644 0.5568 15 1 8.1999 7.6546 1.5835 16 6 7.7957 8.6932 -0.2468 17 7 7.4030 8.5833 -1.4982 18 14 8.2436 10.3685 0.4477 19 1 8.6516 10.2225 1.8681 20 1 9.3683 10.9436 -0.3331 21 1 7.0677 11.2711 0.3603 22 6 7.8384 3.8407 0.1068 23 6 2.2604 -1.3051 0.0006 24 6 2.2499 -2.1264 1.2915 25 6 1.4403 -2.5943 0.0805 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6392 2.0829 -0.1247 30 1 3.8527 3.1359 -0.1497 31 1 6.0268 1.9629 1.2192 32 1 6.2310 1.6589 -0.5227 33 1 5.4691 5.3321 1.3195 34 1 6.2942 3.9937 2.2300 35 1 7.2582 6.2554 -0.8743 36 1 7.3464 9.3721 -2.0599 37 1 8.3010 3.0448 0.6906 38 1 8.3142 3.9868 -0.8630 39 1 3.1697 -1.3235 -0.6002 40 1 1.6977 -1.7228 2.1403 41 1 3.1523 -2.6851 1.5399 42 1 1.8100 -3.4608 -0.4678 43 1 0.3558 -2.4984 0.1322 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691135356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:07 Heat of formation + Delta-G solvation = 10.496149 kcal Electronic energy + Delta-G solvation = -20866.122525 eV Core-core repulsion = 17719.366514 eV Total energy + Delta-G solvation = -3146.756011 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.99082 -39.99634 -38.54260 -35.93501 -34.89612 -34.30787 -32.08791 -29.67792 -28.04135 -26.44810 -25.72956 -24.31894 -23.24254 -23.01817 -21.78149 -20.07479 -19.49738 -19.19358 -17.98437 -17.22469 -16.71319 -16.36571 -16.20463 -15.86102 -15.59340 -15.22187 -14.73305 -14.69020 -14.34406 -14.01349 -13.84892 -13.69058 -13.29739 -13.15075 -12.95464 -12.91975 -12.66587 -12.44699 -12.13817 -12.11611 -12.04310 -11.71514 -11.51938 -11.48107 -11.27212 -10.96591 -10.85462 -10.49150 -10.09771 -9.69636 -9.00729 -7.96114 -5.24508 0.38597 1.47844 1.48179 1.58376 2.32337 2.35632 2.55249 3.06142 3.36607 3.62978 3.71141 3.79162 3.80317 3.94140 4.06243 4.14737 4.19240 4.25736 4.31970 4.40442 4.44540 4.68235 4.72829 4.73214 4.77416 4.86088 4.91719 4.97261 4.98261 5.08973 5.11537 5.23297 5.26751 5.30482 5.36484 5.45599 5.50928 5.58654 5.63988 5.66414 6.27777 6.66670 7.32646 7.33851 8.09481 8.32040 9.27439 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036705 B = 0.002651 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.662624 B =10559.302362 C =10981.457280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.001 3.999 3 C -0.243 4.243 4 C 0.534 3.466 5 O -0.576 6.576 6 N -0.720 5.720 7 C 0.143 3.857 8 C -0.102 4.102 9 H 0.080 0.920 10 C -0.152 4.152 11 C 0.144 3.856 12 H 0.060 0.940 13 N -0.720 5.720 14 C -0.241 4.241 15 H 0.077 0.923 16 C -0.076 4.076 17 N -0.969 5.969 18 Si 0.973 3.027 19 H -0.266 1.266 20 H -0.294 1.294 21 H -0.293 1.293 22 C -0.135 4.135 23 C -0.134 4.134 24 C -0.161 4.161 25 C -0.168 4.168 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.151 0.849 30 H 0.410 0.590 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.374 0.626 36 H 0.251 0.749 37 H 0.104 0.896 38 H 0.057 0.943 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.550 -19.920 3.867 24.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.001 4.001 3 C -0.264 4.264 4 C 0.326 3.674 5 O -0.459 6.459 6 N -0.370 5.370 7 C 0.019 3.981 8 C -0.121 4.121 9 H 0.099 0.901 10 C -0.193 4.193 11 C 0.034 3.966 12 H 0.078 0.922 13 N -0.358 5.358 14 C -0.373 4.373 15 H 0.095 0.905 16 C -0.268 4.268 17 N -0.620 5.620 18 Si 0.802 3.198 19 H -0.191 1.191 20 H -0.221 1.221 21 H -0.220 1.220 22 C -0.174 4.174 23 C -0.153 4.153 24 C -0.199 4.199 25 C -0.204 4.204 26 H 0.109 0.891 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.168 0.832 30 H 0.245 0.755 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.206 0.794 36 H 0.060 0.940 37 H 0.123 0.877 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.119 0.881 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.031 -20.477 4.177 25.172 hybrid contribution 0.329 1.630 -0.404 1.711 sum -13.703 -18.847 3.773 23.606 Atomic orbital electron populations 1.21105 0.88448 1.04714 1.03981 1.22128 0.96946 0.92450 0.88550 1.22506 0.92017 1.00180 1.11677 1.19061 0.89006 0.82940 0.76442 1.90734 1.72072 1.32641 1.50433 1.45956 1.08249 1.10845 1.71972 1.21216 0.79759 0.96031 1.01055 1.22487 0.96799 0.93973 0.98846 0.90147 1.23723 0.99903 0.98689 0.96972 1.21416 0.95577 0.86059 0.93518 0.92195 1.42314 1.79377 1.02433 1.11676 1.19709 1.35673 0.85709 0.96196 0.90541 1.25559 1.03287 1.01574 0.96411 1.69816 1.55568 1.29260 1.07371 0.85078 0.76870 0.79952 0.77888 1.19051 1.22143 1.22039 1.23342 0.94883 0.98257 1.00924 1.21243 1.00502 0.90075 1.03436 1.22807 1.02355 1.02759 0.91931 1.23262 0.99377 0.96818 1.00975 0.89080 0.89613 0.89539 0.83157 0.75483 0.91773 0.92335 0.93285 0.89205 0.79364 0.94004 0.87739 0.92394 0.88445 0.88546 0.89618 0.88136 0.86425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 9.45 71.24 0.67 -0.60 16 2 C 0.00 0.02 5.80 -17.62 -0.10 -0.08 16 3 C -0.24 -4.86 9.63 23.43 0.23 -4.64 16 4 C 0.53 14.20 7.67 86.57 0.66 14.87 16 5 O -0.58 -18.79 13.45 -4.06 -0.05 -18.85 16 6 N -0.72 -17.78 5.55 -466.71 -2.59 -20.37 16 7 C 0.14 3.80 5.50 86.38 0.47 4.28 16 8 C -0.10 -3.01 3.63 -10.27 -0.04 -3.04 16 9 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 10 C -0.15 -4.93 7.45 31.19 0.23 -4.70 16 11 C 0.14 5.56 4.57 45.58 0.21 5.77 16 12 H 0.06 2.32 8.10 -2.39 -0.02 2.30 16 13 N -0.72 -35.81 5.31 -320.15 -1.70 -37.51 16 14 C -0.24 -13.28 9.97 84.03 0.84 -12.44 16 15 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 16 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 17 N -0.97 -58.85 13.06 21.65 0.28 -58.56 16 18 Si 0.97 45.83 29.55 68.60 2.03 47.86 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 21 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 22 C -0.13 -4.21 7.39 31.12 0.23 -3.98 16 23 C -0.13 -2.78 4.12 -11.54 -0.05 -2.83 16 24 C -0.16 -3.02 10.22 30.59 0.31 -2.71 16 25 C -0.17 -2.41 9.78 30.59 0.30 -2.11 16 26 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.09 0.69 8.06 -2.39 -0.02 0.67 16 28 H 0.09 0.67 6.45 -2.39 -0.02 0.66 16 29 H 0.15 2.20 8.04 -2.91 -0.02 2.18 16 30 H 0.41 8.76 8.46 -92.70 -0.78 7.98 16 31 H 0.06 1.74 7.88 -2.39 -0.02 1.72 16 32 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.09 2.53 7.92 -2.39 -0.02 2.51 16 35 H 0.37 19.93 7.90 -92.71 -0.73 19.19 16 36 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 37 H 0.10 2.71 8.10 -2.39 -0.02 2.69 16 38 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.10 2.62 6.62 -2.39 -0.02 2.60 16 40 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.12 1.17 6.36 -2.39 -0.02 1.15 16 Total: -1.00 -67.83 354.05 1.89 -65.94 By element: Atomic # 1 Polarization: 38.10 SS G_CDS: -0.51 Total: 37.59 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 4.44 Total: -16.10 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -4.01 Total: -116.44 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.05 Total: -18.85 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -67.83 1.89 -65.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691135356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.438 kcal (2) G-P(sol) polarization free energy of solvation -67.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds