Wall clock time and date at job start Tue Mar 31 2020 00:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32876 * 1 3 3 C 1.47117 * 120.00140 * 2 1 4 4 C 1.50699 * 120.00059 * 358.65071 * 3 2 1 5 5 C 1.32870 * 119.99947 * 178.65326 * 3 2 1 6 6 C 1.50694 * 120.00012 * 356.32930 * 5 3 2 7 7 C 1.50698 * 109.47175 * 117.38035 * 6 5 3 8 8 O 1.21277 * 119.99933 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00132 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00211 * 179.97438 * 9 7 6 11 11 C 1.53010 * 109.47151 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46733 * 180.02562 * 11 10 9 13 13 C 1.36938 * 119.99731 * 269.99913 * 12 11 10 14 14 H 1.08000 * 119.99834 * 145.17483 * 13 12 11 15 15 C 1.38811 * 120.00126 * 325.17029 * 13 12 11 16 16 N 1.31620 * 120.00089 * 156.88252 * 15 13 12 17 17 Si 1.86795 * 120.00044 * 336.88403 * 15 13 12 18 18 H 1.48501 * 109.47462 * 95.30373 * 17 15 13 19 19 H 1.48507 * 109.47077 * 215.30565 * 17 15 13 20 20 H 1.48504 * 109.47444 * 335.30200 * 17 15 13 21 21 C 1.46500 * 120.00263 * 90.00483 * 12 11 10 22 22 C 1.52995 * 117.50205 * 183.04602 * 21 12 11 23 23 C 1.52993 * 117.50198 * 114.38185 * 21 12 11 24 24 H 1.08005 * 119.99550 * 359.97438 * 1 2 3 25 25 H 1.07993 * 120.00065 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99777 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47328 * 270.00146 * 4 3 2 28 28 H 1.09005 * 109.46804 * 30.00145 * 4 3 2 29 29 H 1.09007 * 109.47026 * 149.99744 * 4 3 2 30 30 H 1.08001 * 119.99968 * 176.32982 * 5 3 2 31 31 H 1.09000 * 109.47056 * 357.37997 * 6 5 3 32 32 H 1.08998 * 109.46998 * 237.37999 * 6 5 3 33 33 H 0.97008 * 120.00249 * 359.97438 * 9 7 6 34 34 H 1.09000 * 109.46873 * 60.00267 * 10 9 7 35 35 H 1.08998 * 109.47336 * 300.00174 * 10 9 7 36 36 H 1.09000 * 109.46906 * 60.00420 * 11 10 9 37 37 H 1.08998 * 109.47251 * 300.00359 * 11 10 9 38 38 H 0.96994 * 120.00451 * 180.02562 * 16 15 13 39 39 H 1.09003 * 115.54599 * 328.71471 * 21 12 11 40 40 H 1.08999 * 117.49583 * 359.97438 * 22 21 12 41 41 H 1.08993 * 117.49904 * 145.02029 * 22 21 12 42 42 H 1.08997 * 117.50440 * 214.98225 * 23 21 12 43 43 H 1.09003 * 117.49704 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0644 1.2741 0.0000 4 6 1.3112 2.5790 -0.0307 5 6 3.3928 1.2742 0.0270 6 6 4.1442 -0.0271 0.1412 7 6 4.9866 -0.2306 -1.0917 8 8 4.9772 0.5991 -1.9762 9 7 5.7503 -1.3346 -1.2114 10 6 6.5687 -1.5327 -2.4102 11 6 7.3327 -2.8533 -2.2936 12 7 8.1516 -3.0510 -3.4922 13 6 7.6332 -3.7109 -4.5743 14 1 7.9148 -3.4137 -5.5737 15 6 6.7459 -4.7617 -4.3868 16 7 5.9110 -5.0976 -5.3473 17 14 6.7366 -5.6993 -2.7712 18 1 5.6941 -5.1345 -1.8770 19 1 6.4425 -7.1314 -3.0316 20 1 8.0659 -5.5774 -2.1204 21 6 9.5251 -2.5430 -3.5330 22 6 10.3046 -2.7180 -4.8378 23 6 10.6561 -3.5700 -3.6157 24 1 -0.5399 0.9354 0.0004 25 1 -0.5400 -0.9352 0.0004 26 1 1.8687 -0.9353 -0.0004 27 1 1.1506 2.8815 -1.0655 28 1 0.3485 2.4546 0.4651 29 1 1.8899 3.3447 0.4861 30 1 3.9341 2.2068 -0.0328 31 1 3.4348 -0.8491 0.2363 32 1 4.7879 0.0010 1.0204 33 1 5.7581 -1.9981 -0.5037 34 1 7.2778 -0.7104 -2.5060 35 1 5.9248 -1.5615 -3.2892 36 1 6.6240 -3.6758 -2.1976 37 1 7.9767 -2.8241 -1.4147 38 1 5.2907 -5.8316 -5.2162 39 1 9.7088 -1.6375 -2.9546 40 1 9.7956 -3.2115 -5.6658 41 1 11.0014 -1.9279 -5.1176 42 1 11.5840 -3.3401 -3.0920 43 1 10.3783 -4.6237 -3.6393 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691222343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:49 Heat of formation + Delta-G solvation = 49.089182 kcal Electronic energy + Delta-G solvation = -21273.157584 eV Core-core repulsion = 18128.075092 eV Total energy + Delta-G solvation = -3145.082491 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.50817 -37.46475 -36.94476 -34.90516 -33.24679 -32.12626 -31.35127 -30.10962 -27.91362 -25.48767 -24.19282 -22.47554 -21.88689 -21.42099 -20.31222 -19.67172 -17.74387 -17.08791 -16.23125 -16.05287 -15.90139 -15.62398 -15.22547 -14.76208 -14.28929 -13.82312 -13.71048 -13.36067 -13.10653 -12.70512 -12.60968 -12.43746 -12.26208 -12.09407 -11.90696 -11.72239 -11.51216 -10.89586 -10.78441 -10.71575 -10.62358 -10.48244 -10.08858 -9.92369 -9.65245 -9.50680 -9.45737 -8.70896 -8.54933 -8.31519 -6.90242 -6.08820 -3.49223 1.25101 2.86584 2.93537 3.17090 3.37934 3.42390 3.54823 4.40814 4.54414 4.71711 4.74966 4.82819 4.89606 5.07485 5.19953 5.22828 5.37549 5.41104 5.48918 5.56545 5.65107 5.70797 5.73909 5.77292 5.88200 5.94266 6.02855 6.13756 6.26224 6.34429 6.38534 6.41642 6.55648 6.60184 6.70285 6.82139 6.84087 6.90429 7.06430 7.79099 7.93116 8.29647 8.51091 8.86989 9.59985 9.96554 11.05943 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020105 B = 0.003902 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.387193 B = 7174.707577 C = 7945.734071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.123 4.123 3 C -0.111 4.111 4 C -0.115 4.115 5 C -0.114 4.114 6 C -0.122 4.122 7 C 0.511 3.489 8 O -0.540 6.540 9 N -0.728 5.728 10 C 0.100 3.900 11 C 0.131 3.869 12 N -0.569 5.569 13 C -0.273 4.273 14 H 0.087 0.913 15 C 0.038 3.962 16 N -0.892 5.892 17 Si 0.875 3.125 18 H -0.286 1.286 19 H -0.300 1.300 20 H -0.267 1.267 21 C 0.119 3.881 22 C -0.187 4.187 23 C -0.222 4.222 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.117 0.883 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.395 0.605 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.265 0.735 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.423 9.370 14.264 17.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.141 4.141 3 C -0.111 4.111 4 C -0.171 4.171 5 C -0.132 4.132 6 C -0.162 4.162 7 C 0.296 3.704 8 O -0.416 6.416 9 N -0.380 5.380 10 C -0.025 4.025 11 C 0.004 3.996 12 N -0.287 5.287 13 C -0.401 4.401 14 H 0.105 0.895 15 C -0.164 4.164 16 N -0.532 5.532 17 Si 0.706 3.294 18 H -0.214 1.214 19 H -0.228 1.228 20 H -0.192 1.192 21 C 0.010 3.990 22 C -0.225 4.225 23 C -0.263 4.263 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.135 0.865 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.137 0.863 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.228 0.772 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.570 9.840 13.508 17.326 hybrid contribution -0.018 -1.150 1.060 1.564 sum -4.588 8.690 14.568 17.572 Atomic orbital electron populations 1.24412 0.95720 1.01976 1.00250 1.22009 0.95412 0.96442 1.00252 1.20548 0.94001 0.94335 1.02254 1.20776 0.99907 0.94115 1.02320 1.22754 0.93845 0.97637 0.98965 1.20941 0.99417 0.98438 0.97367 1.20513 0.79933 0.81643 0.88298 1.90701 1.65298 1.43649 1.41999 1.46134 1.46198 1.22866 1.22769 1.22224 0.94022 0.99363 0.86918 1.21330 0.93853 0.94631 0.89754 1.43532 1.06619 1.64010 1.14569 1.18795 1.24237 1.10305 0.86801 0.89520 1.25414 0.97232 0.96982 0.96728 1.69866 1.19778 1.29672 1.33929 0.86988 0.78260 0.79251 0.84944 1.21417 1.22837 1.19188 1.21150 0.82740 0.95737 0.99327 1.23082 1.03196 1.02649 0.93585 1.23388 1.00575 0.99007 1.03346 0.88118 0.88169 0.86490 0.91351 0.91710 0.91698 0.86293 0.88099 0.88016 0.77157 0.92173 0.90593 0.92283 0.93407 0.92540 0.88944 0.87820 0.90320 0.90716 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 14.12 28.88 0.41 -1.36 16 2 C -0.12 -1.34 9.30 -37.83 -0.35 -1.70 16 3 C -0.11 -1.25 5.98 -102.87 -0.62 -1.87 16 4 C -0.11 -1.05 9.53 36.01 0.34 -0.71 16 5 C -0.11 -1.35 8.43 -36.16 -0.30 -1.65 16 6 C -0.12 -1.38 5.97 -29.04 -0.17 -1.55 16 7 C 0.51 8.12 7.82 -10.99 -0.09 8.04 16 8 O -0.54 -10.96 16.03 5.56 0.09 -10.87 16 9 N -0.73 -11.39 5.56 -60.29 -0.33 -11.73 16 10 C 0.10 1.93 6.00 -4.04 -0.02 1.91 16 11 C 0.13 2.65 4.67 -4.04 -0.02 2.63 16 12 N -0.57 -13.03 2.46 -165.66 -0.41 -13.44 16 13 C -0.27 -7.37 9.09 -15.06 -0.14 -7.50 16 14 H 0.09 2.53 6.68 -52.49 -0.35 2.18 16 15 C 0.04 1.05 5.31 -17.43 -0.09 0.96 16 16 N -0.89 -26.61 13.97 55.49 0.78 -25.84 16 17 Si 0.88 21.22 24.97 -169.99 -4.25 16.97 16 18 H -0.29 -6.56 6.65 56.52 0.38 -6.19 16 19 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 C 0.12 2.35 6.56 -67.94 -0.45 1.90 16 22 C -0.19 -3.52 9.80 -26.70 -0.26 -3.79 16 23 C -0.22 -4.13 10.36 -26.70 -0.28 -4.41 16 24 H 0.10 0.84 6.13 -52.48 -0.32 0.52 16 25 H 0.10 0.83 8.06 -52.49 -0.42 0.41 16 26 H 0.12 1.23 5.80 -52.49 -0.30 0.92 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.50 6.39 -51.93 -0.33 0.17 16 29 H 0.06 0.52 8.07 -51.93 -0.42 0.11 16 30 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.10 1.01 5.26 -51.93 -0.27 0.73 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.40 4.96 8.47 -40.82 -0.35 4.62 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 36 H 0.06 1.30 2.96 -51.93 -0.15 1.15 16 37 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 40 H 0.10 2.21 6.37 -51.93 -0.33 1.88 16 41 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 LS Contribution 350.57 15.07 5.28 5.28 Total: -1.00 -32.23 350.57 -7.52 -39.75 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.64 Total: 8.96 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -2.04 Total: -9.10 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.03 Total: -51.00 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.25 Total: 16.97 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.23 -7.52 -39.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691222343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.835 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds