Wall clock time and date at job start Tue Mar 31 2020 00:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32876 * 1 3 3 C 1.47117 * 120.00140 * 2 1 4 4 C 1.50699 * 120.00059 * 358.65071 * 3 2 1 5 5 C 1.32870 * 119.99947 * 178.65326 * 3 2 1 6 6 C 1.50694 * 120.00012 * 356.32930 * 5 3 2 7 7 C 1.50698 * 109.47175 * 117.38035 * 6 5 3 8 8 O 1.21277 * 119.99933 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00132 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00211 * 179.97438 * 9 7 6 11 11 C 1.53010 * 109.47151 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46733 * 180.02562 * 11 10 9 13 13 C 1.36938 * 119.99731 * 269.99913 * 12 11 10 14 14 H 1.08000 * 119.99834 * 145.17483 * 13 12 11 15 15 C 1.38811 * 120.00126 * 325.17029 * 13 12 11 16 16 N 1.31620 * 120.00089 * 156.88252 * 15 13 12 17 17 Si 1.86795 * 120.00044 * 336.88403 * 15 13 12 18 18 H 1.48501 * 109.47462 * 95.30373 * 17 15 13 19 19 H 1.48507 * 109.47077 * 215.30565 * 17 15 13 20 20 H 1.48504 * 109.47444 * 335.30200 * 17 15 13 21 21 C 1.46500 * 120.00263 * 90.00483 * 12 11 10 22 22 C 1.52995 * 117.50205 * 183.04602 * 21 12 11 23 23 C 1.52993 * 117.50198 * 114.38185 * 21 12 11 24 24 H 1.08005 * 119.99550 * 359.97438 * 1 2 3 25 25 H 1.07993 * 120.00065 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99777 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47328 * 270.00146 * 4 3 2 28 28 H 1.09005 * 109.46804 * 30.00145 * 4 3 2 29 29 H 1.09007 * 109.47026 * 149.99744 * 4 3 2 30 30 H 1.08001 * 119.99968 * 176.32982 * 5 3 2 31 31 H 1.09000 * 109.47056 * 357.37997 * 6 5 3 32 32 H 1.08998 * 109.46998 * 237.37999 * 6 5 3 33 33 H 0.97008 * 120.00249 * 359.97438 * 9 7 6 34 34 H 1.09000 * 109.46873 * 60.00267 * 10 9 7 35 35 H 1.08998 * 109.47336 * 300.00174 * 10 9 7 36 36 H 1.09000 * 109.46906 * 60.00420 * 11 10 9 37 37 H 1.08998 * 109.47251 * 300.00359 * 11 10 9 38 38 H 0.96994 * 120.00451 * 180.02562 * 16 15 13 39 39 H 1.09003 * 115.54599 * 328.71471 * 21 12 11 40 40 H 1.08999 * 117.49583 * 359.97438 * 22 21 12 41 41 H 1.08993 * 117.49904 * 145.02029 * 22 21 12 42 42 H 1.08997 * 117.50440 * 214.98225 * 23 21 12 43 43 H 1.09003 * 117.49704 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0644 1.2741 0.0000 4 6 1.3112 2.5790 -0.0307 5 6 3.3928 1.2742 0.0270 6 6 4.1442 -0.0271 0.1412 7 6 4.9866 -0.2306 -1.0917 8 8 4.9772 0.5991 -1.9762 9 7 5.7503 -1.3346 -1.2114 10 6 6.5687 -1.5327 -2.4102 11 6 7.3327 -2.8533 -2.2936 12 7 8.1516 -3.0510 -3.4922 13 6 7.6332 -3.7109 -4.5743 14 1 7.9148 -3.4137 -5.5737 15 6 6.7459 -4.7617 -4.3868 16 7 5.9110 -5.0976 -5.3473 17 14 6.7366 -5.6993 -2.7712 18 1 5.6941 -5.1345 -1.8770 19 1 6.4425 -7.1314 -3.0316 20 1 8.0659 -5.5774 -2.1204 21 6 9.5251 -2.5430 -3.5330 22 6 10.3046 -2.7180 -4.8378 23 6 10.6561 -3.5700 -3.6157 24 1 -0.5399 0.9354 0.0004 25 1 -0.5400 -0.9352 0.0004 26 1 1.8687 -0.9353 -0.0004 27 1 1.1506 2.8815 -1.0655 28 1 0.3485 2.4546 0.4651 29 1 1.8899 3.3447 0.4861 30 1 3.9341 2.2068 -0.0328 31 1 3.4348 -0.8491 0.2363 32 1 4.7879 0.0010 1.0204 33 1 5.7581 -1.9981 -0.5037 34 1 7.2778 -0.7104 -2.5060 35 1 5.9248 -1.5615 -3.2892 36 1 6.6240 -3.6758 -2.1976 37 1 7.9767 -2.8241 -1.4147 38 1 5.2907 -5.8316 -5.2162 39 1 9.7088 -1.6375 -2.9546 40 1 9.7956 -3.2115 -5.6658 41 1 11.0014 -1.9279 -5.1176 42 1 11.5840 -3.3401 -3.0920 43 1 10.3783 -4.6237 -3.6393 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691222343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:48 Heat of formation + Delta-G solvation = 28.189654 kcal Electronic energy + Delta-G solvation = -21274.063855 eV Core-core repulsion = 18128.075092 eV Total energy + Delta-G solvation = -3145.988763 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.79801 -39.07876 -37.85397 -36.39018 -34.98280 -33.41472 -32.85106 -31.01459 -29.43414 -26.68084 -25.88712 -23.94398 -22.97751 -22.74252 -21.63323 -21.37595 -18.76190 -18.44791 -17.78882 -17.55871 -17.33109 -16.94701 -16.60641 -16.00810 -15.54763 -15.32998 -15.02674 -14.63207 -14.37498 -14.19575 -14.12424 -13.59107 -13.49290 -13.40347 -13.24623 -12.83215 -12.67837 -12.53976 -12.38900 -12.14182 -11.82219 -11.74172 -11.51534 -11.43878 -11.30465 -11.04395 -10.89851 -10.64260 -10.08087 -9.14300 -8.76664 -8.22249 -5.59980 0.43423 1.24580 1.40838 1.51601 1.65947 2.00917 2.33072 2.38964 3.01075 3.22936 3.31810 3.72880 3.88931 3.99719 4.08133 4.14200 4.24704 4.26505 4.37046 4.40957 4.45596 4.56011 4.60372 4.67852 4.76940 4.80019 4.89669 4.92715 4.93922 5.00808 5.10316 5.15523 5.28695 5.45021 5.47505 5.52452 5.57596 5.80770 5.90205 6.03358 6.16458 6.58633 6.92473 7.29010 7.58453 7.95650 8.97006 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020105 B = 0.003902 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.387193 B = 7174.707577 C = 7945.734071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.152 4.152 3 C -0.111 4.111 4 C -0.117 4.117 5 C -0.139 4.139 6 C -0.109 4.109 7 C 0.507 3.493 8 O -0.590 6.590 9 N -0.719 5.719 10 C 0.117 3.883 11 C 0.131 3.869 12 N -0.584 5.584 13 C -0.260 4.260 14 H 0.045 0.955 15 C -0.023 4.023 16 N -0.947 5.947 17 Si 0.943 3.057 18 H -0.262 1.262 19 H -0.313 1.313 20 H -0.253 1.253 21 C 0.102 3.898 22 C -0.191 4.191 23 C -0.204 4.204 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.119 0.881 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.136 0.864 33 H 0.414 0.586 34 H 0.060 0.940 35 H 0.026 0.974 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.263 0.737 39 H 0.126 0.874 40 H 0.066 0.934 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.960 9.864 17.824 20.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.169 4.169 3 C -0.111 4.111 4 C -0.174 4.174 5 C -0.157 4.157 6 C -0.148 4.148 7 C 0.295 3.705 8 O -0.470 6.470 9 N -0.371 5.371 10 C -0.009 4.009 11 C 0.006 3.994 12 N -0.303 5.303 13 C -0.390 4.390 14 H 0.063 0.937 15 C -0.219 4.219 16 N -0.591 5.591 17 Si 0.771 3.229 18 H -0.189 1.189 19 H -0.242 1.242 20 H -0.177 1.177 21 C -0.005 4.005 22 C -0.230 4.230 23 C -0.245 4.245 24 H 0.130 0.870 25 H 0.130 0.870 26 H 0.136 0.864 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.154 0.846 33 H 0.251 0.749 34 H 0.078 0.922 35 H 0.045 0.955 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.143 0.857 40 H 0.085 0.915 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.082 10.341 17.132 20.423 hybrid contribution -0.185 -1.202 -0.138 1.224 sum -4.267 9.140 16.994 19.762 Atomic orbital electron populations 1.24670 0.95379 1.03165 0.97736 1.22135 0.96131 0.96391 1.02267 1.20850 0.94139 0.95348 1.00786 1.20842 1.00677 0.93521 1.02311 1.22815 0.94272 0.97781 1.00851 1.20951 0.99283 0.98746 0.95800 1.21396 0.79438 0.80554 0.89074 1.90679 1.66846 1.45355 1.44150 1.45977 1.45641 1.23532 1.21990 1.21743 0.93346 0.99084 0.86758 1.21399 0.94008 0.94070 0.89941 1.43634 1.08532 1.63945 1.14220 1.18618 1.23401 1.10168 0.86809 0.93721 1.26073 0.97114 0.98080 1.00650 1.70016 1.21458 1.30757 1.36862 0.85885 0.79413 0.76704 0.80897 1.18891 1.24160 1.17711 1.21512 0.81369 0.97245 1.00391 1.23063 1.03643 1.03677 0.92571 1.23358 1.01335 0.97081 1.02684 0.87016 0.86955 0.86385 0.91871 0.90171 0.90752 0.86832 0.86481 0.84606 0.74915 0.92206 0.95494 0.93800 0.89402 0.92815 0.85664 0.91513 0.87029 0.86755 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 14.12 66.64 0.94 -1.92 16 2 C -0.15 -3.02 9.30 23.43 0.22 -2.81 16 3 C -0.11 -2.35 5.98 -18.71 -0.11 -2.46 16 4 C -0.12 -1.97 9.53 71.24 0.68 -1.29 16 5 C -0.14 -3.12 8.43 24.51 0.21 -2.92 16 6 C -0.11 -2.21 5.97 29.10 0.17 -2.03 16 7 C 0.51 15.57 7.82 87.66 0.69 16.26 16 8 O -0.59 -24.22 16.03 -3.02 -0.05 -24.27 16 9 N -0.72 -21.18 5.56 -463.05 -2.57 -23.75 16 10 C 0.12 4.46 6.00 86.38 0.52 4.98 16 11 C 0.13 5.06 4.67 86.38 0.40 5.47 16 12 N -0.58 -26.41 2.46 -678.04 -1.67 -28.08 16 13 C -0.26 -14.53 9.09 84.03 0.76 -13.77 16 14 H 0.05 2.81 6.68 -2.91 -0.02 2.79 16 15 C -0.02 -1.30 5.31 84.86 0.45 -0.85 16 16 N -0.95 -59.10 13.97 21.65 0.30 -58.80 16 17 Si 0.94 43.98 24.97 68.60 1.71 45.70 16 18 H -0.26 -11.10 6.65 99.48 0.66 -10.44 16 19 H -0.31 -15.10 7.11 99.48 0.71 -14.40 16 20 H -0.25 -11.12 7.11 99.48 0.71 -10.42 16 21 C 0.10 3.81 6.56 44.99 0.30 4.11 16 22 C -0.19 -7.05 9.80 30.62 0.30 -6.75 16 23 C -0.20 -7.06 10.36 30.62 0.32 -6.74 16 24 H 0.11 1.57 6.13 -2.91 -0.02 1.55 16 25 H 0.11 1.57 8.06 -2.91 -0.02 1.55 16 26 H 0.12 2.25 5.80 -2.91 -0.02 2.23 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.08 1.07 6.39 -2.38 -0.02 1.05 16 29 H 0.07 1.09 8.07 -2.38 -0.02 1.07 16 30 H 0.11 2.61 8.06 -2.91 -0.02 2.59 16 31 H 0.12 2.02 5.26 -2.39 -0.01 2.01 16 32 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.41 9.05 8.47 -92.70 -0.79 8.26 16 34 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.04 1.84 2.96 -2.39 -0.01 1.83 16 37 H 0.09 2.72 8.07 -2.39 -0.02 2.70 16 38 H 0.26 15.54 8.31 -92.71 -0.77 14.76 16 39 H 0.13 3.88 8.14 -2.39 -0.02 3.86 16 40 H 0.07 2.96 6.37 -2.39 -0.02 2.95 16 41 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 42 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 43 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -74.39 350.57 3.74 -70.65 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.17 Total: 29.27 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 5.84 Total: -10.72 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -3.94 Total: -110.64 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.05 Total: -24.27 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.71 Total: 45.70 kcal Total: -74.39 3.74 -70.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691222343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.843 kcal (2) G-P(sol) polarization free energy of solvation -74.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds