Wall clock time and date at job start Tue Mar 31 2020 00:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32864 * 1 3 3 C 1.47119 * 119.99997 * 2 1 4 4 C 1.50697 * 120.00134 * 0.02562 * 3 2 1 5 5 C 1.32874 * 120.00004 * 179.97438 * 3 2 1 6 6 C 1.50698 * 120.00093 * 174.79532 * 5 3 2 7 7 C 1.50696 * 109.47385 * 236.49314 * 6 5 3 8 8 O 1.21278 * 120.00273 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99947 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00164 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47122 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46641 * 179.97438 * 11 10 9 13 13 C 1.36940 * 120.00169 * 269.99706 * 12 11 10 14 14 H 1.07991 * 120.00083 * 142.15885 * 13 12 11 15 15 C 1.38815 * 119.99609 * 322.15801 * 13 12 11 16 16 N 1.31613 * 120.00115 * 341.35437 * 15 13 12 17 17 Si 1.86803 * 119.99438 * 161.35761 * 15 13 12 18 18 H 1.48501 * 109.47274 * 90.00246 * 17 15 13 19 19 H 1.48500 * 109.46647 * 209.99809 * 17 15 13 20 20 H 1.48498 * 109.47132 * 329.99805 * 17 15 13 21 21 C 1.46504 * 119.99757 * 90.00472 * 12 11 10 22 22 C 1.53005 * 117.49511 * 183.43427 * 21 12 11 23 23 C 1.52998 * 117.49922 * 114.77747 * 21 12 11 24 24 H 1.07999 * 119.99764 * 179.97438 * 1 2 3 25 25 H 1.08002 * 119.99768 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.00227 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.46862 * 264.46707 * 4 3 2 28 28 H 1.09000 * 109.46825 * 24.46508 * 4 3 2 29 29 H 1.08997 * 109.47269 * 144.46022 * 4 3 2 30 30 H 1.08001 * 119.99872 * 354.80308 * 5 3 2 31 31 H 1.09005 * 109.46792 * 116.48840 * 6 5 3 32 32 H 1.09001 * 109.46964 * 356.49457 * 6 5 3 33 33 H 0.97005 * 119.99910 * 359.97438 * 9 7 6 34 34 H 1.08994 * 109.46993 * 59.99716 * 10 9 7 35 35 H 1.09006 * 109.46585 * 299.99793 * 10 9 7 36 36 H 1.09000 * 109.46913 * 59.99940 * 11 10 9 37 37 H 1.08995 * 109.46816 * 299.99528 * 11 10 9 38 38 H 0.97008 * 119.99569 * 185.03533 * 16 15 13 39 39 H 1.08999 * 115.54768 * 329.09900 * 21 12 11 40 40 H 1.09001 * 117.49947 * 359.97438 * 22 21 12 41 41 H 1.09000 * 117.49535 * 145.01669 * 22 21 12 42 42 H 1.09008 * 117.49383 * 214.97651 * 23 21 12 43 43 H 1.08995 * 117.49803 * 359.97119 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3286 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 1.3108 2.5792 0.0006 5 6 3.3930 1.2741 0.0005 6 6 4.1465 2.5738 -0.1179 7 6 5.0774 2.5088 -1.3012 8 8 5.1247 1.5057 -1.9812 9 7 5.8582 3.5650 -1.6032 10 6 6.7627 3.5021 -2.7538 11 6 7.5279 4.8216 -2.8739 12 7 8.4328 4.7584 -4.0242 13 6 9.7119 4.2959 -3.8646 14 1 10.1657 3.6872 -4.6324 15 6 10.4250 4.6097 -2.7156 16 7 10.0473 5.6205 -1.9622 17 14 11.9207 3.5971 -2.2392 18 1 13.1355 4.1883 -2.8556 19 1 12.0665 3.5950 -0.7613 20 1 11.7490 2.2033 -2.7217 21 6 7.9695 5.1900 -5.3453 22 6 8.9344 5.0245 -6.5211 23 6 8.6401 6.4189 -5.9624 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8687 -0.9353 -0.0004 27 1 1.2146 2.9436 -1.0221 28 1 0.3192 2.4260 0.4265 29 1 1.8535 3.3118 0.5979 30 1 3.9329 0.3426 0.0857 31 1 4.7248 2.7425 0.7906 32 1 3.4399 3.3921 -0.2560 33 1 5.8206 4.3672 -1.0590 34 1 6.1841 3.3341 -3.6621 35 1 7.4690 2.6833 -2.6163 36 1 8.1065 4.9900 -1.9656 37 1 6.8213 5.6400 -3.0116 38 1 10.5863 5.8856 -1.2004 39 1 6.9072 5.0444 -5.5416 40 1 9.9140 4.5949 -6.3117 41 1 8.5068 4.7705 -7.4911 42 1 8.0191 7.0818 -6.5650 43 1 9.4257 6.9065 -5.3853 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691222344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:52 Heat of formation + Delta-G solvation = 37.616775 kcal Electronic energy + Delta-G solvation = -21070.097754 eV Core-core repulsion = 17924.517782 eV Total energy + Delta-G solvation = -3145.579972 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.39648 -37.20176 -36.87439 -34.70018 -33.20000 -32.54710 -30.83408 -29.08632 -27.67133 -26.35231 -24.32932 -22.00960 -21.37378 -21.04480 -19.97638 -19.65818 -17.94983 -17.07616 -16.26695 -15.96662 -15.55813 -15.37256 -14.87788 -14.59265 -14.12289 -13.94911 -13.67439 -13.29297 -13.06893 -12.73534 -12.62229 -12.31920 -11.94096 -11.70291 -11.60595 -11.46185 -10.99915 -10.96583 -10.77812 -10.73371 -10.62907 -10.32744 -10.15053 -9.88593 -9.63756 -9.55971 -9.28343 -8.60243 -8.48480 -8.29484 -6.55095 -5.91144 -3.48475 1.24354 2.89248 2.99148 3.29846 3.37842 3.42352 3.68806 4.39014 4.57353 4.74584 4.91956 5.00224 5.10544 5.20343 5.23294 5.29704 5.35620 5.37086 5.53938 5.57601 5.71959 5.86872 5.89741 6.04123 6.11402 6.20421 6.24481 6.29426 6.37084 6.49350 6.52849 6.58579 6.61827 6.83927 6.88268 6.98559 7.07199 7.21253 7.52440 7.76527 7.94315 8.44119 8.61490 9.07881 9.69175 10.25850 11.10450 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020616 B = 0.003421 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.841435 B = 8182.428114 C = 8915.672132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 C -0.119 4.119 4 C -0.122 4.122 5 C -0.108 4.108 6 C -0.121 4.121 7 C 0.510 3.490 8 O -0.546 6.546 9 N -0.722 5.722 10 C 0.099 3.901 11 C 0.138 3.862 12 N -0.548 5.548 13 C -0.261 4.261 14 H 0.066 0.934 15 C 0.015 3.985 16 N -0.890 5.890 17 Si 0.901 3.099 18 H -0.285 1.285 19 H -0.288 1.288 20 H -0.276 1.276 21 C 0.120 3.880 22 C -0.195 4.195 23 C -0.220 4.220 24 H 0.099 0.901 25 H 0.101 0.899 26 H 0.113 0.887 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.398 0.602 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.031 0.969 38 H 0.257 0.743 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.864 -3.176 5.058 16.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.128 4.128 3 C -0.119 4.119 4 C -0.178 4.178 5 C -0.126 4.126 6 C -0.160 4.160 7 C 0.296 3.704 8 O -0.424 6.424 9 N -0.372 5.372 10 C -0.027 4.027 11 C 0.011 3.989 12 N -0.265 5.265 13 C -0.390 4.390 14 H 0.083 0.917 15 C -0.185 4.185 16 N -0.533 5.533 17 Si 0.729 3.271 18 H -0.211 1.211 19 H -0.214 1.214 20 H -0.201 1.201 21 C 0.011 3.989 22 C -0.233 4.233 23 C -0.261 4.261 24 H 0.117 0.883 25 H 0.119 0.881 26 H 0.131 0.869 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.135 0.865 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.231 0.769 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.124 0.876 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.758 -3.872 4.768 15.986 hybrid contribution 0.936 -0.066 0.426 1.031 sum -13.822 -3.938 5.195 15.282 Atomic orbital electron populations 1.24366 0.95699 1.01877 1.01305 1.21868 0.95287 0.96138 0.99462 1.20521 0.93901 0.94315 1.03177 1.20882 1.00066 0.94607 1.02284 1.22819 0.93839 0.97942 0.98041 1.20850 0.98756 0.98206 0.98226 1.20425 0.80872 0.83394 0.85750 1.90687 1.67977 1.31376 1.52328 1.46112 1.41753 1.17093 1.32280 1.22325 0.91329 1.02978 0.86040 1.21111 0.91791 0.90756 0.95209 1.43200 1.09553 1.71931 1.01801 1.19041 0.90349 1.25501 1.04148 0.91663 1.25259 0.97743 0.96200 0.99327 1.69832 1.38727 1.25448 1.19254 0.86324 0.82558 0.80559 0.77615 1.21121 1.21372 1.20087 1.21229 0.93599 0.97808 0.86298 1.23036 1.02607 1.00945 0.96746 1.23351 1.05772 0.91366 1.05564 0.88306 0.88109 0.86868 0.91422 0.91629 0.91302 0.86457 0.87957 0.88154 0.76913 0.93310 0.91705 0.87621 0.95099 0.93268 0.89564 0.88423 0.90728 0.91224 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.69 14.12 28.88 0.41 -1.29 16 2 C -0.11 -1.13 9.83 -37.83 -0.37 -1.50 16 3 C -0.12 -1.31 5.98 -102.87 -0.62 -1.92 16 4 C -0.12 -1.08 8.57 36.00 0.31 -0.77 16 5 C -0.11 -1.31 8.45 -36.16 -0.31 -1.62 16 6 C -0.12 -1.38 5.82 -29.04 -0.17 -1.55 16 7 C 0.51 8.29 7.82 -10.99 -0.09 8.21 16 8 O -0.55 -11.25 16.03 5.56 0.09 -11.16 16 9 N -0.72 -11.68 5.56 -60.29 -0.33 -12.01 16 10 C 0.10 1.98 6.00 -4.04 -0.02 1.95 16 11 C 0.14 3.02 5.44 -4.04 -0.02 3.00 16 12 N -0.55 -13.17 2.76 -165.66 -0.46 -13.63 16 13 C -0.26 -6.85 8.55 -15.06 -0.13 -6.98 16 14 H 0.07 1.74 6.65 -52.49 -0.35 1.39 16 15 C 0.01 0.40 5.02 -17.43 -0.09 0.31 16 16 N -0.89 -24.23 11.31 55.49 0.63 -23.60 16 17 Si 0.90 21.10 29.60 -169.99 -5.03 16.07 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.12 2.54 6.56 -67.93 -0.45 2.09 16 22 C -0.20 -3.85 9.80 -26.69 -0.26 -4.11 16 23 C -0.22 -4.43 10.36 -26.69 -0.28 -4.71 16 24 H 0.10 0.71 8.06 -52.49 -0.42 0.29 16 25 H 0.10 0.78 6.04 -52.49 -0.32 0.47 16 26 H 0.11 1.10 8.06 -52.48 -0.42 0.68 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.50 6.16 -51.93 -0.32 0.18 16 29 H 0.07 0.53 6.66 -51.93 -0.35 0.18 16 30 H 0.12 1.50 8.05 -52.49 -0.42 1.08 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.10 0.94 5.71 -51.93 -0.30 0.65 16 33 H 0.40 5.30 8.47 -40.82 -0.35 4.95 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.11 2.58 5.42 -51.93 -0.28 2.30 16 37 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 38 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 39 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 40 H 0.10 2.09 6.43 -51.93 -0.33 1.76 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 43 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 356.15 15.07 5.37 5.37 Total: -1.00 -30.40 356.15 -8.61 -39.02 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -6.79 Total: 8.84 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -2.08 Total: -8.89 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: -0.17 Total: -49.24 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.40 -8.61 -39.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691222344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.632 kcal (2) G-P(sol) polarization free energy of solvation -30.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds