Wall clock time and date at job start Tue Mar 31 2020 00:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32864 * 1 3 3 C 1.47119 * 119.99997 * 2 1 4 4 C 1.50697 * 120.00134 * 0.02562 * 3 2 1 5 5 C 1.32874 * 120.00004 * 179.97438 * 3 2 1 6 6 C 1.50698 * 120.00093 * 174.79532 * 5 3 2 7 7 C 1.50696 * 109.47385 * 236.49314 * 6 5 3 8 8 O 1.21278 * 120.00273 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99947 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00164 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47122 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46641 * 179.97438 * 11 10 9 13 13 C 1.36940 * 120.00169 * 269.99706 * 12 11 10 14 14 H 1.07991 * 120.00083 * 142.15885 * 13 12 11 15 15 C 1.38815 * 119.99609 * 322.15801 * 13 12 11 16 16 N 1.31613 * 120.00115 * 341.35437 * 15 13 12 17 17 Si 1.86803 * 119.99438 * 161.35761 * 15 13 12 18 18 H 1.48501 * 109.47274 * 90.00246 * 17 15 13 19 19 H 1.48500 * 109.46647 * 209.99809 * 17 15 13 20 20 H 1.48498 * 109.47132 * 329.99805 * 17 15 13 21 21 C 1.46504 * 119.99757 * 90.00472 * 12 11 10 22 22 C 1.53005 * 117.49511 * 183.43427 * 21 12 11 23 23 C 1.52998 * 117.49922 * 114.77747 * 21 12 11 24 24 H 1.07999 * 119.99764 * 179.97438 * 1 2 3 25 25 H 1.08002 * 119.99768 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.00227 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.46862 * 264.46707 * 4 3 2 28 28 H 1.09000 * 109.46825 * 24.46508 * 4 3 2 29 29 H 1.08997 * 109.47269 * 144.46022 * 4 3 2 30 30 H 1.08001 * 119.99872 * 354.80308 * 5 3 2 31 31 H 1.09005 * 109.46792 * 116.48840 * 6 5 3 32 32 H 1.09001 * 109.46964 * 356.49457 * 6 5 3 33 33 H 0.97005 * 119.99910 * 359.97438 * 9 7 6 34 34 H 1.08994 * 109.46993 * 59.99716 * 10 9 7 35 35 H 1.09006 * 109.46585 * 299.99793 * 10 9 7 36 36 H 1.09000 * 109.46913 * 59.99940 * 11 10 9 37 37 H 1.08995 * 109.46816 * 299.99528 * 11 10 9 38 38 H 0.97008 * 119.99569 * 185.03533 * 16 15 13 39 39 H 1.08999 * 115.54768 * 329.09900 * 21 12 11 40 40 H 1.09001 * 117.49947 * 359.97438 * 22 21 12 41 41 H 1.09000 * 117.49535 * 145.01669 * 22 21 12 42 42 H 1.09008 * 117.49383 * 214.97651 * 23 21 12 43 43 H 1.08995 * 117.49803 * 359.97119 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3286 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 1.3108 2.5792 0.0006 5 6 3.3930 1.2741 0.0005 6 6 4.1465 2.5738 -0.1179 7 6 5.0774 2.5088 -1.3012 8 8 5.1247 1.5057 -1.9812 9 7 5.8582 3.5650 -1.6032 10 6 6.7627 3.5021 -2.7538 11 6 7.5279 4.8216 -2.8739 12 7 8.4328 4.7584 -4.0242 13 6 9.7119 4.2959 -3.8646 14 1 10.1657 3.6872 -4.6324 15 6 10.4250 4.6097 -2.7156 16 7 10.0473 5.6205 -1.9622 17 14 11.9207 3.5971 -2.2392 18 1 13.1355 4.1883 -2.8556 19 1 12.0665 3.5950 -0.7613 20 1 11.7490 2.2033 -2.7217 21 6 7.9695 5.1900 -5.3453 22 6 8.9344 5.0245 -6.5211 23 6 8.6401 6.4189 -5.9624 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8687 -0.9353 -0.0004 27 1 1.2146 2.9436 -1.0221 28 1 0.3192 2.4260 0.4265 29 1 1.8535 3.3118 0.5979 30 1 3.9329 0.3426 0.0857 31 1 4.7248 2.7425 0.7906 32 1 3.4399 3.3921 -0.2560 33 1 5.8206 4.3672 -1.0590 34 1 6.1841 3.3341 -3.6621 35 1 7.4690 2.6833 -2.6163 36 1 8.1065 4.9900 -1.9656 37 1 6.8213 5.6400 -3.0116 38 1 10.5863 5.8856 -1.2004 39 1 6.9072 5.0444 -5.5416 40 1 9.9140 4.5949 -6.3117 41 1 8.5068 4.7705 -7.4911 42 1 8.0191 7.0818 -6.5650 43 1 9.4257 6.9065 -5.3853 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691222344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:51 Heat of formation + Delta-G solvation = 20.134751 kcal Electronic energy + Delta-G solvation = -21070.855832 eV Core-core repulsion = 17924.517782 eV Total energy + Delta-G solvation = -3146.338050 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.72903 -38.84350 -37.81430 -36.25836 -34.95458 -33.47782 -32.61198 -30.18577 -28.97868 -27.40868 -26.12906 -23.55515 -22.91728 -22.24447 -21.58557 -20.99399 -18.76448 -18.49408 -17.80835 -17.33529 -16.99966 -16.94453 -16.23267 -16.19865 -15.65089 -15.04659 -14.74347 -14.59309 -14.45662 -14.09609 -13.77497 -13.72407 -13.27628 -13.23526 -12.86653 -12.65086 -12.55576 -12.46108 -12.27999 -12.12768 -11.92944 -11.73395 -11.68918 -11.39123 -11.36381 -10.99933 -10.84552 -10.54070 -10.01231 -9.11428 -8.46286 -7.89597 -5.50094 0.43671 1.41192 1.45279 1.53708 1.69577 2.04457 2.37146 2.51924 3.13595 3.39444 3.57889 3.74925 3.93952 4.03715 4.29247 4.32353 4.37132 4.39806 4.45777 4.46927 4.54117 4.60415 4.62885 4.80244 4.83049 4.90800 4.94322 5.00774 5.04190 5.14160 5.23935 5.33516 5.48689 5.49819 5.55123 5.60494 5.65833 5.78508 5.80045 6.05386 6.45613 6.66434 7.12100 7.33536 7.79887 8.30560 9.08265 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020616 B = 0.003421 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.841435 B = 8182.428114 C = 8915.672132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.146 4.146 3 C -0.108 4.108 4 C -0.125 4.125 5 C -0.143 4.143 6 C -0.104 4.104 7 C 0.507 3.493 8 O -0.594 6.594 9 N -0.714 5.714 10 C 0.120 3.880 11 C 0.146 3.854 12 N -0.567 5.567 13 C -0.267 4.267 14 H 0.055 0.945 15 C -0.027 4.027 16 N -0.912 5.912 17 Si 0.953 3.047 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.278 1.278 21 C 0.098 3.902 22 C -0.185 4.185 23 C -0.210 4.210 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.108 0.892 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.414 0.586 34 H 0.043 0.957 35 H 0.028 0.972 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.255 0.745 39 H 0.110 0.890 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.103 0.897 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.011 -2.556 5.200 17.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.108 4.108 4 C -0.181 4.181 5 C -0.161 4.161 6 C -0.143 4.143 7 C 0.295 3.705 8 O -0.475 6.475 9 N -0.366 5.366 10 C -0.006 4.006 11 C 0.020 3.980 12 N -0.285 5.285 13 C -0.397 4.397 14 H 0.073 0.927 15 C -0.225 4.225 16 N -0.555 5.555 17 Si 0.781 3.219 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.009 4.009 22 C -0.223 4.223 23 C -0.251 4.251 24 H 0.132 0.868 25 H 0.132 0.868 26 H 0.126 0.874 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.116 0.884 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.250 0.750 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.127 0.873 40 H 0.092 0.908 41 H 0.127 0.873 42 H 0.121 0.879 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.919 -3.226 4.921 17.913 hybrid contribution 1.463 -0.304 0.336 1.531 sum -15.456 -3.530 5.257 16.703 Atomic orbital electron populations 1.24654 0.95062 1.03303 0.97788 1.21989 0.96179 0.96007 1.02205 1.20846 0.93711 0.95640 1.00570 1.20980 1.00821 0.93600 1.02743 1.22739 0.94483 0.97582 1.01345 1.20806 0.98210 0.98860 0.96445 1.21330 0.80657 0.82162 0.86363 1.90663 1.69450 1.33153 1.54260 1.45966 1.40994 1.18136 1.31459 1.21787 0.90944 1.00608 0.87307 1.20967 0.91467 0.91855 0.93736 1.43407 1.09292 1.72430 1.03345 1.19138 0.91396 1.25177 1.03987 0.92731 1.25804 1.00057 0.97121 0.99538 1.69934 1.39573 1.26476 1.19547 0.85510 0.80166 0.79123 0.77115 1.20848 1.21291 1.20363 1.21525 0.95064 0.98869 0.85487 1.23048 1.01270 1.00299 0.97731 1.23254 1.04895 0.91615 1.05296 0.86761 0.86789 0.87407 0.91353 0.90102 0.89764 0.88431 0.85673 0.85360 0.74976 0.93883 0.95371 0.89988 0.93541 0.93517 0.87272 0.90750 0.87269 0.87859 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 14.12 66.64 0.94 -1.60 16 2 C -0.15 -2.85 9.83 23.43 0.23 -2.62 16 3 C -0.11 -2.22 5.98 -18.71 -0.11 -2.33 16 4 C -0.13 -1.85 8.57 71.23 0.61 -1.23 16 5 C -0.14 -3.42 8.45 24.51 0.21 -3.21 16 6 C -0.10 -2.22 5.82 29.10 0.17 -2.06 16 7 C 0.51 16.34 7.82 87.66 0.69 17.03 16 8 O -0.59 -25.11 16.03 -3.02 -0.05 -25.16 16 9 N -0.71 -22.78 5.56 -463.06 -2.57 -25.35 16 10 C 0.12 4.89 6.00 86.38 0.52 5.41 16 11 C 0.15 6.42 5.44 86.38 0.47 6.89 16 12 N -0.57 -27.46 2.76 -678.02 -1.87 -29.33 16 13 C -0.27 -14.29 8.55 84.03 0.72 -13.58 16 14 H 0.06 2.98 6.65 -2.92 -0.02 2.97 16 15 C -0.03 -1.47 5.02 84.86 0.43 -1.04 16 16 N -0.91 -50.38 11.31 21.65 0.24 -50.14 16 17 Si 0.95 44.14 29.60 68.60 2.03 46.17 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 19 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 C 0.10 4.07 6.56 44.99 0.30 4.37 16 22 C -0.19 -7.07 9.80 30.62 0.30 -6.77 16 23 C -0.21 -8.18 10.36 30.62 0.32 -7.86 16 24 H 0.11 1.33 8.06 -2.91 -0.02 1.30 16 25 H 0.11 1.38 6.04 -2.91 -0.02 1.36 16 26 H 0.11 2.14 8.06 -2.91 -0.02 2.11 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 0.94 6.16 -2.39 -0.01 0.93 16 29 H 0.08 0.99 6.66 -2.39 -0.02 0.97 16 30 H 0.10 2.65 8.05 -2.91 -0.02 2.62 16 31 H 0.13 2.10 8.14 -2.38 -0.02 2.08 16 32 H 0.13 2.02 5.71 -2.39 -0.01 2.00 16 33 H 0.41 10.49 8.47 -92.70 -0.79 9.70 16 34 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.08 4.06 5.42 -2.39 -0.01 4.05 16 37 H 0.05 1.86 8.07 -2.39 -0.02 1.84 16 38 H 0.26 13.65 8.32 -92.70 -0.77 12.87 16 39 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 40 H 0.07 3.19 6.43 -2.39 -0.02 3.18 16 41 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 42 H 0.10 3.31 8.14 -2.38 -0.02 3.29 16 43 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -67.56 356.15 3.77 -63.80 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.21 Total: 28.61 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 5.78 Total: -8.60 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -4.20 Total: -104.83 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.05 Total: -25.16 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -67.56 3.77 -63.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691222344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.930 kcal (2) G-P(sol) polarization free energy of solvation -67.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds