Wall clock time and date at job start Tue Mar 31 2020 00:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32994 * 119.99636 * 2 1 4 4 C 1.47107 * 119.99865 * 172.95602 * 3 2 1 5 5 O 1.21615 * 120.00080 * 354.04411 * 4 3 2 6 6 N 1.34776 * 119.99764 * 174.03525 * 4 3 2 7 7 C 1.46501 * 119.99577 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.46686 * 180.02562 * 7 6 4 9 9 H 1.08997 * 112.84913 * 316.18662 * 8 7 6 10 10 C 1.53951 * 113.66754 * 87.43979 * 8 7 6 11 11 C 1.53782 * 87.01781 * 139.93051 * 10 8 7 12 12 H 1.09005 * 113.61563 * 89.22741 * 11 10 8 13 13 N 1.46508 * 113.61403 * 220.04626 * 11 10 8 14 14 C 1.36929 * 119.99816 * 253.86158 * 13 11 10 15 15 H 1.07999 * 120.00299 * 0.27503 * 14 13 11 16 16 C 1.38821 * 119.99894 * 180.27372 * 14 13 11 17 17 N 1.31622 * 119.99750 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 119.99788 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47097 * 90.00024 * 18 16 14 20 20 H 1.48496 * 109.47036 * 209.99741 * 18 16 14 21 21 H 1.48506 * 109.47245 * 329.99793 * 18 16 14 22 22 C 1.53779 * 87.17334 * 334.63532 * 11 10 8 23 23 C 1.50698 * 120.00245 * 180.02562 * 2 1 3 24 24 C 1.52999 * 117.50021 * 1.67577 * 23 2 1 25 25 C 1.53007 * 117.49560 * 293.01798 * 23 2 1 26 26 H 1.08992 * 109.47398 * 89.99895 * 1 2 3 27 27 H 1.09001 * 109.46576 * 209.99428 * 1 2 3 28 28 H 1.08996 * 109.47531 * 329.99229 * 1 2 3 29 29 H 1.08003 * 120.00077 * 352.96278 * 3 2 1 30 30 H 0.97003 * 120.00113 * 0.02562 * 6 4 3 31 31 H 1.08993 * 109.47142 * 60.00427 * 7 6 4 32 32 H 1.08998 * 109.47177 * 299.99688 * 7 6 4 33 33 H 1.08995 * 113.61533 * 25.41276 * 10 8 7 34 34 H 1.08998 * 113.66559 * 254.45361 * 10 8 7 35 35 H 0.96997 * 119.99769 * 74.13469 * 13 11 10 36 36 H 0.97002 * 119.99235 * 179.97438 * 17 16 14 37 37 H 1.09009 * 113.61191 * 139.93858 * 22 11 10 38 38 H 1.08998 * 113.61823 * 270.84336 * 22 11 10 39 39 H 1.09000 * 115.55018 * 147.35259 * 23 2 1 40 40 H 1.09005 * 117.49735 * 0.02562 * 24 23 2 41 41 H 1.09000 * 117.49864 * 145.02260 * 24 23 2 42 42 H 1.08993 * 117.49857 * 214.97939 * 25 23 2 43 43 H 1.08996 * 117.49806 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6346 1.1567 0.1562 5 8 4.2243 0.1198 0.3935 6 7 4.3213 2.3102 0.0362 7 6 5.7781 2.3149 0.1913 8 6 6.3056 3.7396 0.0094 9 1 5.8484 4.2557 -0.8347 10 6 6.3121 4.5666 1.3079 11 6 7.6686 5.1273 0.8492 12 1 7.5854 6.0242 0.2354 13 7 8.6425 5.2690 1.9345 14 6 8.9474 6.5114 2.4228 15 1 8.4668 7.3864 2.0109 16 6 9.8743 6.6462 3.4474 17 7 10.1678 7.8405 3.9164 18 14 10.7061 5.1328 4.1593 19 1 11.9531 4.8516 3.4035 20 1 11.0365 5.3749 5.5867 21 1 9.7901 3.9686 4.0538 22 6 7.8403 3.8357 0.0324 23 6 2.2606 -1.3051 -0.0006 24 6 1.4391 -2.5952 -0.0408 25 6 2.1542 -2.1827 1.2482 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3632 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.6379 2.0836 -0.1146 30 1 3.8509 3.1372 -0.1528 31 1 6.2254 1.6629 -0.5589 32 1 6.0387 1.9557 1.1868 33 1 6.3735 3.9602 2.2115 34 1 5.5225 5.3166 1.3530 35 1 9.0741 4.4831 2.3045 36 1 10.8153 7.9346 4.6326 37 1 8.2824 3.9964 -0.9510 38 1 8.3201 3.0290 0.5866 39 1 3.2127 -1.2979 -0.5311 40 1 0.3535 -2.5000 -0.0673 41 1 1.8509 -3.4369 -0.5976 42 1 3.0362 -2.7533 1.5389 43 1 1.5389 -1.8164 2.0699 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691690416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:14 Heat of formation + Delta-G solvation = 12.280414 kcal Electronic energy + Delta-G solvation = -20822.276138 eV Core-core repulsion = 17675.597499 eV Total energy + Delta-G solvation = -3146.678639 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.00371 -39.99129 -38.56595 -36.06748 -34.96347 -34.30295 -32.75225 -29.76802 -28.10598 -26.48888 -25.63308 -24.21724 -23.21702 -22.45823 -21.82211 -20.84649 -19.58618 -19.30776 -18.00892 -17.31745 -16.77103 -16.39726 -16.25009 -16.05550 -15.60892 -15.26990 -14.73987 -14.56334 -14.22070 -14.00400 -13.92136 -13.87184 -13.27291 -13.18817 -13.13417 -13.04504 -12.71983 -12.49198 -12.20763 -12.13780 -11.90449 -11.72819 -11.66518 -11.57819 -11.29132 -11.11051 -10.88937 -10.49426 -10.10009 -9.68732 -9.27595 -8.03794 -5.35977 0.38449 1.36653 1.38955 1.46170 2.31418 2.34436 2.46857 3.05596 3.26594 3.58814 3.62592 3.69959 3.78665 3.92186 4.05179 4.08403 4.16501 4.24792 4.28235 4.38489 4.44490 4.55598 4.66811 4.73967 4.77406 4.82110 4.93803 4.95866 4.96318 5.02711 5.10618 5.20438 5.22825 5.26212 5.34011 5.45225 5.52636 5.66267 5.67143 5.77356 6.22366 6.68794 7.07046 7.35977 7.85456 8.03165 9.17792 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031027 B = 0.002751 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.223533 B =10175.957421 C =10503.242256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.000 4.000 3 C -0.240 4.240 4 C 0.533 3.467 5 O -0.581 6.581 6 N -0.715 5.715 7 C 0.140 3.860 8 C -0.097 4.097 9 H 0.120 0.880 10 C -0.155 4.155 11 C 0.146 3.854 12 H 0.079 0.921 13 N -0.745 5.745 14 C -0.231 4.231 15 H 0.060 0.940 16 C -0.066 4.066 17 N -0.984 5.984 18 Si 0.953 3.047 19 H -0.277 1.277 20 H -0.296 1.296 21 H -0.256 1.256 22 C -0.136 4.136 23 C -0.140 4.140 24 C -0.167 4.167 25 C -0.167 4.167 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.157 0.843 30 H 0.414 0.586 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.364 0.636 36 H 0.257 0.743 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.480 -18.798 -12.197 31.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.002 4.002 3 C -0.261 4.261 4 C 0.324 3.676 5 O -0.464 6.464 6 N -0.366 5.366 7 C 0.016 3.984 8 C -0.116 4.116 9 H 0.137 0.863 10 C -0.195 4.195 11 C 0.037 3.963 12 H 0.097 0.903 13 N -0.386 5.386 14 C -0.362 4.362 15 H 0.078 0.922 16 C -0.258 4.258 17 N -0.635 5.635 18 Si 0.781 3.219 19 H -0.204 1.204 20 H -0.223 1.223 21 H -0.181 1.181 22 C -0.175 4.175 23 C -0.158 4.158 24 C -0.203 4.203 25 C -0.204 4.204 26 H 0.113 0.887 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.174 0.826 30 H 0.251 0.749 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.198 0.802 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.120 0.880 40 H 0.136 0.864 41 H 0.118 0.882 42 H 0.103 0.897 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.031 -19.255 -12.005 31.627 hybrid contribution 1.053 0.098 0.879 1.375 sum -20.978 -19.157 -11.126 30.510 Atomic orbital electron populations 1.21088 0.88464 1.04396 1.04277 1.22134 0.96941 0.92467 0.88675 1.22492 0.91767 1.00274 1.11552 1.19137 0.89151 0.83040 0.76303 1.90738 1.72163 1.32859 1.50613 1.45864 1.07804 1.10740 1.72239 1.21176 0.80005 0.96682 1.00563 1.22499 0.96110 0.94018 0.98940 0.86251 1.23758 0.99591 0.99300 0.96861 1.21939 0.88828 0.96518 0.89008 0.90329 1.42809 1.50027 1.04103 1.41668 1.19133 1.17857 0.85945 1.13263 0.92199 1.25506 1.01004 0.99229 1.00037 1.69883 1.38737 1.23315 1.31523 0.85431 0.79044 0.80170 0.77256 1.20364 1.22332 1.18074 1.23344 0.95453 0.97769 1.00935 1.21408 1.00404 0.89799 1.04164 1.23241 0.99968 0.97179 0.99960 1.22839 1.02880 1.02755 0.91937 0.88669 0.89965 0.89633 0.82553 0.74941 0.91828 0.93568 0.92007 0.91578 0.80233 0.93396 0.89834 0.90636 0.87950 0.86378 0.88205 0.89718 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 9.49 71.24 0.68 -0.37 16 2 C 0.00 0.00 5.80 -17.62 -0.10 -0.11 16 3 C -0.24 -4.12 9.62 23.43 0.23 -3.89 16 4 C 0.53 12.86 7.67 86.57 0.66 13.52 16 5 O -0.58 -18.45 13.31 -4.08 -0.05 -18.50 16 6 N -0.72 -14.69 5.55 -466.70 -2.59 -17.28 16 7 C 0.14 3.33 5.51 86.38 0.48 3.80 16 8 C -0.10 -2.20 3.75 -10.21 -0.04 -2.24 16 9 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 10 C -0.15 -4.67 7.45 31.18 0.23 -4.44 16 11 C 0.15 5.24 4.47 45.52 0.20 5.45 16 12 H 0.08 2.88 8.11 -2.38 -0.02 2.86 16 13 N -0.75 -34.75 5.21 -320.42 -1.67 -36.42 16 14 C -0.23 -13.20 10.45 84.04 0.88 -12.32 16 15 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 16 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 17 N -0.98 -63.63 13.97 21.66 0.30 -63.33 16 18 Si 0.95 46.38 27.74 68.60 1.90 48.28 16 19 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 20 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 21 H -0.26 -11.40 6.52 99.48 0.65 -10.75 16 22 C -0.14 -3.74 7.39 31.12 0.23 -3.51 16 23 C -0.14 -2.76 4.34 -11.54 -0.05 -2.81 16 24 C -0.17 -2.30 9.79 30.62 0.30 -2.00 16 25 C -0.17 -3.06 10.24 30.62 0.31 -2.74 16 26 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.08 0.57 6.37 -2.39 -0.02 0.55 16 28 H 0.08 0.54 8.07 -2.39 -0.02 0.52 16 29 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 30 H 0.41 6.06 8.46 -92.71 -0.78 5.27 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.32 7.85 -2.39 -0.02 1.30 16 33 H 0.06 2.08 7.90 -2.39 -0.02 2.07 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.36 16.54 5.77 -92.71 -0.53 16.01 16 36 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 37 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.08 2.16 8.07 -2.39 -0.02 2.14 16 39 H 0.10 2.67 6.24 -2.39 -0.01 2.66 16 40 H 0.12 1.08 6.31 -2.38 -0.02 1.07 16 41 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.10 1.61 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -74.04 350.71 1.99 -72.04 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -0.37 Total: 30.36 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: 4.48 Total: -15.15 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -3.96 Total: -117.03 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.05 Total: -18.50 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.90 Total: 48.28 kcal Total: -74.04 1.99 -72.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691690416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.324 kcal (2) G-P(sol) polarization free energy of solvation -74.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds